EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000003527 (Gene tree)
Gene ID: 111231928
Gene Symbol: si:ch73-63e15.2
Alias: si:dkey-19f23.4
Full Name: strawberry notch homolog 2
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 61658 bases
Position: chrBDQW01000321.1:4291030-4352687
Accession: 111231928
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000004912	ResIII	PF04851.15	6.1e-07	1	1
ENSSDUP00000004792	ResIII	PF04851.15	6.6e-07	1	1
ENSSDUP00000004745	ResIII	PF04851.15	6.9e-07	1	1
ENSSDUP00000004866	ResIII	PF04851.15	6.9e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000004967	-	8613	XM_022759206	ENSSDUP00000004866	1635 (aa)	XP_022614927	UPI000BBF35C8
ENSSDUT00000005013	-	7925	XM_022759209	ENSSDUP00000004912	1548 (aa)	XP_022614930	-
ENSSDUT00000004841	-	8748	-	ENSSDUP00000004745	1635 (aa)	-	UPI000BBF35C8
ENSSDUT00000004891	-	8664	XM_022759208	ENSSDUP00000004792	1607 (aa)	XP_022614929	UPI000BBE7249

Gene Model

Click here to download ENSSDUG00000003527's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000003527's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000003527	si:ch73-63e15.2	62	63.719	ENSSDUG00000023480	sbno1	71	63.765

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000003527	si:ch73-63e15.2	74	68.552	ENSG00000064932	SBNO2	88	68.664	Homo_sapiens
ENSSDUG00000003527	si:ch73-63e15.2	100	88.454	ENSAPOG00000003185	si:ch73-63e15.2	100	88.253	Acanthochromis_polyacanthus
ENSSDUG00000003527	si:ch73-63e15.2	100	88.713	ENSAOCG00000016581	si:ch73-63e15.2	100	88.466	Amphiprion_ocellaris
ENSSDUG00000003527	si:ch73-63e15.2	100	88.591	ENSAPEG00000008862	si:ch73-63e15.2	100	88.469	Amphiprion_percula
ENSSDUG00000003527	si:ch73-63e15.2	100	85.470	ENSATEG00000023838	si:ch73-63e15.2	99	88.431	Anabas_testudineus
ENSSDUG00000003527	si:ch73-63e15.2	77	70.147	ENSAPLG00000007158	SBNO2	94	69.984	Anas_platyrhynchos
ENSSDUG00000003527	si:ch73-63e15.2	74	68.038	ENSANAG00000026685	SBNO2	89	67.894	Aotus_nancymaae
ENSSDUG00000003527	si:ch73-63e15.2	100	80.415	ENSACLG00000005090	si:ch73-63e15.2	100	80.354	Astatotilapia_calliptera
ENSSDUG00000003527	si:ch73-63e15.2	75	79.795	ENSAMXG00000018868	sbno2a	96	80.952	Astyanax_mexicanus
ENSSDUG00000003527	si:ch73-63e15.2	76	81.702	ENSAMXG00000015881	si:ch73-63e15.2	85	81.702	Astyanax_mexicanus
ENSSDUG00000003527	si:ch73-63e15.2	74	69.647	ENSBTAG00000020780	SBNO2	88	69.349	Bos_taurus
ENSSDUG00000003527	si:ch73-63e15.2	73	70.087	ENSCAFG00000019543	SBNO2	84	69.983	Canis_familiaris
ENSSDUG00000003527	si:ch73-63e15.2	73	70.087	ENSCAFG00020017115	SBNO2	89	69.983	Canis_lupus_dingo
ENSSDUG00000003527	si:ch73-63e15.2	73	70.026	ENSCHIG00000026127	SBNO2	86	69.792	Capra_hircus
ENSSDUG00000003527	si:ch73-63e15.2	72	67.745	ENSCAPG00000005731	SBNO2	94	67.568	Cavia_aperea
ENSSDUG00000003527	si:ch73-63e15.2	73	67.622	ENSCPOG00000007477	SBNO2	87	67.037	Cavia_porcellus
ENSSDUG00000003527	si:ch73-63e15.2	74	68.123	ENSCCAG00000037518	SBNO2	89	67.979	Cebus_capucinus
ENSSDUG00000003527	si:ch73-63e15.2	74	68.836	ENSCATG00000037046	SBNO2	88	68.836	Cercocebus_atys
ENSSDUG00000003527	si:ch73-63e15.2	74	69.046	ENSCLAG00000010178	SBNO2	99	69.527	Chinchilla_lanigera
ENSSDUG00000003527	si:ch73-63e15.2	73	69.278	ENSCSAG00000012317	SBNO2	85	68.349	Chlorocebus_sabaeus
ENSSDUG00000003527	si:ch73-63e15.2	74	70.593	ENSCPBG00000008920	SBNO2	79	83.372	Chrysemys_picta_bellii
ENSSDUG00000003527	si:ch73-63e15.2	71	68.543	ENSCANG00000036745	SBNO2	96	68.543	Colobus_angolensis_palliatus
ENSSDUG00000003527	si:ch73-63e15.2	73	68.146	ENSCGRG00001023960	Sbno2	85	67.851	Cricetulus_griseus_chok1gshd
ENSSDUG00000003527	si:ch73-63e15.2	73	69.478	ENSCGRG00000011984	Sbno2	85	69.177	Cricetulus_griseus_crigri
ENSSDUG00000003527	si:ch73-63e15.2	76	89.217	ENSCSEG00000006856	si:ch73-63e15.2	97	91.568	Cynoglossus_semilaevis
ENSSDUG00000003527	si:ch73-63e15.2	100	77.325	ENSCVAG00000005663	si:ch73-63e15.2	100	77.693	Cyprinodon_variegatus
ENSSDUG00000003527	si:ch73-63e15.2	76	80.553	ENSDARG00000016188	SBNO2	86	80.553	Danio_rerio
ENSSDUG00000003527	si:ch73-63e15.2	75	79.074	ENSDARG00000098801	sbno2a	92	76.803	Danio_rerio
ENSSDUG00000003527	si:ch73-63e15.2	73	69.452	ENSDORG00000002916	Sbno2	89	67.659	Dipodomys_ordii
ENSSDUG00000003527	si:ch73-63e15.2	74	69.383	ENSEASG00005021621	SBNO2	89	69.237	Equus_asinus_asinus
ENSSDUG00000003527	si:ch73-63e15.2	74	69.468	ENSECAG00000011827	SBNO2	89	69.323	Equus_caballus
ENSSDUG00000003527	si:ch73-63e15.2	91	87.115	ENSELUG00000020457	si:ch73-63e15.2	99	73.216	Esox_lucius
ENSSDUG00000003527	si:ch73-63e15.2	74	72.470	ENSFALG00000013988	SBNO2	92	68.380	Ficedula_albicollis
ENSSDUG00000003527	si:ch73-63e15.2	72	67.018	ENSFDAG00000015186	SBNO2	87	66.667	Fukomys_damarensis
ENSSDUG00000003527	si:ch73-63e15.2	100	78.784	ENSFHEG00000022262	si:ch73-63e15.2	100	78.757	Fundulus_heteroclitus
ENSSDUG00000003527	si:ch73-63e15.2	74	88.889	ENSGMOG00000007542	si:ch73-63e15.2	96	88.889	Gadus_morhua
ENSSDUG00000003527	si:ch73-63e15.2	81	68.351	ENSGALG00000037522	SBNO2	88	71.029	Gallus_gallus
ENSSDUG00000003527	si:ch73-63e15.2	77	89.320	ENSGAFG00000004860	si:ch73-63e15.2	93	90.144	Gambusia_affinis
ENSSDUG00000003527	si:ch73-63e15.2	73	92.254	ENSGACG00000013190	si:ch73-63e15.2	95	92.254	Gasterosteus_aculeatus
ENSSDUG00000003527	si:ch73-63e15.2	84	67.344	ENSGAGG00000008348	SBNO2	91	68.868	Gopherus_agassizii
ENSSDUG00000003527	si:ch73-63e15.2	99	81.462	ENSHBUG00000010742	si:ch73-63e15.2	100	80.281	Haplochromis_burtoni
ENSSDUG00000003527	si:ch73-63e15.2	73	69.425	ENSHGLG00000008739	SBNO2	85	69.085	Heterocephalus_glaber_female
ENSSDUG00000003527	si:ch73-63e15.2	74	68.777	ENSHGLG00100005269	SBNO2	99	69.224	Heterocephalus_glaber_male
ENSSDUG00000003527	si:ch73-63e15.2	77	88.619	ENSHCOG00000000884	si:ch73-63e15.2	95	86.392	Hippocampus_comes
ENSSDUG00000003527	si:ch73-63e15.2	75	80.357	ENSIPUG00000019672	sbno2	99	77.005	Ictalurus_punctatus
ENSSDUG00000003527	si:ch73-63e15.2	74	80.763	ENSIPUG00000000537	si:ch73-63e15.2	86	79.780	Ictalurus_punctatus
ENSSDUG00000003527	si:ch73-63e15.2	73	69.887	ENSSTOG00000025832	SBNO2	90	66.506	Ictidomys_tridecemlineatus
ENSSDUG00000003527	si:ch73-63e15.2	74	66.122	ENSJJAG00000017397	Sbno2	91	63.183	Jaculus_jaculus
ENSSDUG00000003527	si:ch73-63e15.2	100	81.613	ENSKMAG00000005541	si:ch73-63e15.2	100	79.685	Kryptolebias_marmoratus
ENSSDUG00000003527	si:ch73-63e15.2	100	86.620	ENSLBEG00000025016	si:ch73-63e15.2	99	92.161	Labrus_bergylta
ENSSDUG00000003527	si:ch73-63e15.2	74	86.527	ENSLOCG00000004643	si:ch73-63e15.2	84	86.527	Lepisosteus_oculatus
ENSSDUG00000003527	si:ch73-63e15.2	72	66.167	ENSLAFG00000008824	SBNO2	89	65.875	Loxodonta_africana
ENSSDUG00000003527	si:ch73-63e15.2	74	67.151	ENSMFAG00000040030	SBNO2	90	67.151	Macaca_fascicularis
ENSSDUG00000003527	si:ch73-63e15.2	73	69.278	ENSMMUG00000010886	SBNO2	87	67.739	Macaca_mulatta
ENSSDUG00000003527	si:ch73-63e15.2	74	68.836	ENSMNEG00000039927	SBNO2	88	68.836	Macaca_nemestrina
ENSSDUG00000003527	si:ch73-63e15.2	67	69.877	ENSMLEG00000038556	SBNO2	91	69.794	Mandrillus_leucophaeus
ENSSDUG00000003527	si:ch73-63e15.2	100	86.993	ENSMAMG00000018758	si:ch73-63e15.2	100	86.864	Mastacembelus_armatus
ENSSDUG00000003527	si:ch73-63e15.2	100	80.464	ENSMZEG00005010682	si:ch73-63e15.2	100	80.342	Maylandia_zebra
ENSSDUG00000003527	si:ch73-63e15.2	74	72.720	ENSMGAG00000003801	SBNO2	90	72.821	Meleagris_gallopavo
ENSSDUG00000003527	si:ch73-63e15.2	73	69.539	ENSMAUG00000008034	Sbno2	88	67.216	Mesocricetus_auratus
ENSSDUG00000003527	si:ch73-63e15.2	74	68.353	ENSMICG00000013071	SBNO2	88	68.663	Microcebus_murinus
ENSSDUG00000003527	si:ch73-63e15.2	73	69.887	ENSMOCG00000010504	Sbno2	85	69.524	Microtus_ochrogaster
ENSSDUG00000003527	si:ch73-63e15.2	73	71.552	ENSMODG00000005382	SBNO2	89	67.673	Monodelphis_domestica
ENSSDUG00000003527	si:ch73-63e15.2	62	84.984	ENSMALG00000021831	si:ch73-63e15.2	99	84.984	Monopterus_albus
ENSSDUG00000003527	si:ch73-63e15.2	73	68.957	ENSMUSG00000035673	Sbno2	97	66.530	Mus_musculus
ENSSDUG00000003527	si:ch73-63e15.2	73	69.191	MGP_PahariEiJ_G0030976	Sbno2	85	69.064	Mus_pahari
ENSSDUG00000003527	si:ch73-63e15.2	73	69.191	MGP_SPRETEiJ_G0016381	Sbno2	94	66.530	Mus_spretus
ENSSDUG00000003527	si:ch73-63e15.2	63	71.992	ENSMPUG00000008747	SBNO2	99	67.399	Mustela_putorius_furo
ENSSDUG00000003527	si:ch73-63e15.2	73	69.104	ENSNGAG00000004308	Sbno2	86	68.930	Nannospalax_galili
ENSSDUG00000003527	si:ch73-63e15.2	80	90.693	ENSNBRG00000022968	si:ch73-63e15.2	99	90.390	Neolamprologus_brichardi
ENSSDUG00000003527	si:ch73-63e15.2	70	70.213	ENSNLEG00000001305	SBNO2	89	70.213	Nomascus_leucogenys
ENSSDUG00000003527	si:ch73-63e15.2	60	67.410	ENSMEUG00000013511	-	78	67.091	Notamacropus_eugenii
ENSSDUG00000003527	si:ch73-63e15.2	73	68.586	ENSOPRG00000017238	SBNO2	94	68.987	Ochotona_princeps
ENSSDUG00000003527	si:ch73-63e15.2	73	68.435	ENSODEG00000011822	SBNO2	86	68.045	Octodon_degus
ENSSDUG00000003527	si:ch73-63e15.2	100	81.536	ENSONIG00000002490	si:ch73-63e15.2	99	89.412	Oreochromis_niloticus
ENSSDUG00000003527	si:ch73-63e15.2	100	78.113	ENSORLG00000000913	si:ch73-63e15.2	100	77.486	Oryzias_latipes
ENSSDUG00000003527	si:ch73-63e15.2	100	78.049	ENSORLG00020010978	si:ch73-63e15.2	100	77.486	Oryzias_latipes_hni
ENSSDUG00000003527	si:ch73-63e15.2	100	77.920	ENSORLG00015000202	si:ch73-63e15.2	100	77.357	Oryzias_latipes_hsok
ENSSDUG00000003527	si:ch73-63e15.2	73	67.333	ENSOARG00000011130	SBNO2	86	67.128	Ovis_aries
ENSSDUG00000003527	si:ch73-63e15.2	74	67.630	ENSPPAG00000032482	SBNO2	90	67.742	Pan_paniscus
ENSSDUG00000003527	si:ch73-63e15.2	74	68.552	ENSPTRG00000010185	SBNO2	89	68.606	Pan_troglodytes
ENSSDUG00000003527	si:ch73-63e15.2	74	65.325	ENSPANG00000009658	SBNO2	88	65.068	Papio_anubis
ENSSDUG00000003527	si:ch73-63e15.2	92	83.915	ENSPKIG00000024201	si:ch73-63e15.2	85	83.915	Paramormyrops_kingsleyae
ENSSDUG00000003527	si:ch73-63e15.2	65	79.746	ENSPKIG00000009707	-	84	79.746	Paramormyrops_kingsleyae
ENSSDUG00000003527	si:ch73-63e15.2	62	74.187	ENSPSIG00000002852	SBNO2	99	74.085	Pelodiscus_sinensis
ENSSDUG00000003527	si:ch73-63e15.2	77	86.118	ENSPMGG00000014375	si:ch73-63e15.2	95	84.954	Periophthalmus_magnuspinnatus
ENSSDUG00000003527	si:ch73-63e15.2	73	67.367	ENSPEMG00000024122	Sbno2	85	67.515	Peromyscus_maniculatus_bairdii
ENSSDUG00000003527	si:ch73-63e15.2	73	71.255	ENSPCIG00000011264	SBNO2	89	68.562	Phascolarctos_cinereus
ENSSDUG00000003527	si:ch73-63e15.2	100	77.785	ENSPFOG00000004096	si:ch73-63e15.2	100	87.910	Poecilia_formosa
ENSSDUG00000003527	si:ch73-63e15.2	100	78.147	ENSPLAG00000014653	si:ch73-63e15.2	100	77.764	Poecilia_latipinna
ENSSDUG00000003527	si:ch73-63e15.2	100	77.693	ENSPMEG00000002129	si:ch73-63e15.2	96	84.810	Poecilia_mexicana
ENSSDUG00000003527	si:ch73-63e15.2	100	77.570	ENSPREG00000006755	si:ch73-63e15.2	100	77.300	Poecilia_reticulata
ENSSDUG00000003527	si:ch73-63e15.2	68	68.715	ENSPCAG00000012256	SBNO2	79	68.436	Procavia_capensis
ENSSDUG00000003527	si:ch73-63e15.2	74	62.275	ENSPCOG00000015216	SBNO2	90	60.320	Propithecus_coquereli
ENSSDUG00000003527	si:ch73-63e15.2	100	81.625	ENSPNYG00000019926	si:ch73-63e15.2	99	81.560	Pundamilia_nyererei
ENSSDUG00000003527	si:ch73-63e15.2	75	79.881	ENSPNAG00000026609	sbno2a	99	70.503	Pygocentrus_nattereri
ENSSDUG00000003527	si:ch73-63e15.2	77	82.378	ENSPNAG00000020260	si:ch73-63e15.2	86	82.378	Pygocentrus_nattereri
ENSSDUG00000003527	si:ch73-63e15.2	73	69.713	ENSRNOG00000013987	Sbno2	89	69.686	Rattus_norvegicus
ENSSDUG00000003527	si:ch73-63e15.2	68	67.440	ENSRBIG00000009740	SBNO2	86	68.195	Rhinopithecus_bieti
ENSSDUG00000003527	si:ch73-63e15.2	65	70.933	ENSRROG00000044671	SBNO2	85	71.726	Rhinopithecus_roxellana
ENSSDUG00000003527	si:ch73-63e15.2	74	68.123	ENSSBOG00000023562	SBNO2	89	67.979	Saimiri_boliviensis_boliviensis
ENSSDUG00000003527	si:ch73-63e15.2	72	72.247	ENSSHAG00000010241	SBNO2	99	71.021	Sarcophilus_harrisii
ENSSDUG00000003527	si:ch73-63e15.2	90	80.805	ENSSFOG00015005861	si:ch73-63e15.2	96	82.293	Scleropages_formosus
ENSSDUG00000003527	si:ch73-63e15.2	100	91.519	ENSSMAG00000012489	si:ch73-63e15.2	100	91.519	Scophthalmus_maximus
ENSSDUG00000003527	si:ch73-63e15.2	100	98.838	ENSSLDG00000004623	si:ch73-63e15.2	100	98.838	Seriola_lalandi_dorsalis
ENSSDUG00000003527	si:ch73-63e15.2	100	88.996	ENSSPAG00000017717	si:ch73-63e15.2	100	89.189	Stegastes_partitus
ENSSDUG00000003527	si:ch73-63e15.2	74	69.152	ENSSSCG00000030042	SBNO2	90	68.980	Sus_scrofa
ENSSDUG00000003527	si:ch73-63e15.2	71	89.792	ENSTRUG00000018193	si:ch73-63e15.2	86	90.393	Takifugu_rubripes
ENSSDUG00000003527	si:ch73-63e15.2	67	71.008	ENSUAMG00000006568	SBNO2	91	75.216	Ursus_americanus
ENSSDUG00000003527	si:ch73-63e15.2	73	70.087	ENSVVUG00000022823	SBNO2	82	69.983	Vulpes_vulpes
ENSSDUG00000003527	si:ch73-63e15.2	66	75.304	ENSXETG00000021579	sbno2	91	75.506	Xenopus_tropicalis
ENSSDUG00000003527	si:ch73-63e15.2	89	87.241	ENSXCOG00000009209	si:ch73-63e15.2	94	89.547	Xiphophorus_couchianus
ENSSDUG00000003527	si:ch73-63e15.2	100	77.955	ENSXMAG00000012091	si:ch73-63e15.2	91	90.493	Xiphophorus_maculatus