EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000003823 (Gene tree)
Gene ID: 111228284
Gene Symbol: rab18a
Alias: fc62e07|wu:fc62e07|zgc:77145
Full Name: RAB18%2C member RAS oncogene family
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 11455 bases
Position: chrBDQW01000216.1:2744050-2755504
Accession: 111228284
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000005183	MMR_HSR1	PF01926.23	1e-07	1	1
ENSSDUP00000005200	MMR_HSR1	PF01926.23	5.8e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000005284	-	3254	XM_022754154	ENSSDUP00000005183	204 (aa)	XP_022609875	UPI000BBE20B4
ENSSDUT00000005301	-	543	-	ENSSDUP00000005200	180 (aa)	-	-

Gene Model

Click here to download ENSSDUG00000003823's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000003823's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000003823	rab18a	79	36.747	ENSSDUG00000003386	rab9a	82	36.747
ENSSDUG00000003823	rab18a	79	37.349	ENSSDUG00000007575	rab9b	82	37.349
ENSSDUG00000003823	rab18a	72	41.830	ENSSDUG00000019885	-	63	42.105
ENSSDUG00000003823	rab18a	75	33.333	ENSSDUG00000004119	rab36	51	33.333
ENSSDUG00000003823	rab18a	52	36.111	ENSSDUG00000017824	-	83	36.364
ENSSDUG00000003823	rab18a	93	38.776	ENSSDUG00000013968	rab33a	62	42.857
ENSSDUG00000003823	rab18a	73	36.000	ENSSDUG00000023163	rras2	79	36.025
ENSSDUG00000003823	rab18a	85	32.955	ENSSDUG00000010942	rab34a	66	32.955
ENSSDUG00000003823	rab18a	82	43.787	ENSSDUG00000002965	rab11ba	79	43.787
ENSSDUG00000003823	rab18a	86	34.637	ENSSDUG00000014765	rabl2	78	34.637
ENSSDUG00000003823	rab18a	95	46.939	ENSSDUG00000016888	rab1ab	91	43.396
ENSSDUG00000003823	rab18a	79	45.679	ENSSDUG00000013558	rab11bb	74	45.679
ENSSDUG00000003823	rab18a	73	40.667	ENSSDUG00000001791	rab33ba	62	40.667
ENSSDUG00000003823	rab18a	77	32.099	ENSSDUG00000009122	rheb	85	32.099
ENSSDUG00000003823	rab18a	95	30.808	ENSSDUG00000006543	RAB29	61	38.843
ENSSDUG00000003823	rab18a	89	31.522	ENSSDUG00000017779	kras	97	31.522
ENSSDUG00000003823	rab18a	77	31.481	ENSSDUG00000016858	-	85	31.481
ENSSDUG00000003823	rab18a	80	37.725	ENSSDUG00000008011	-	81	37.725
ENSSDUG00000003823	rab18a	85	37.288	ENSSDUG00000019738	si:dkey-13a21.4	84	37.288
ENSSDUG00000003823	rab18a	91	40.741	ENSSDUG00000009835	rab5aa	87	40.741
ENSSDUG00000003823	rab18a	79	37.952	ENSSDUG00000005037	-	78	37.952
ENSSDUG00000003823	rab18a	88	44.865	ENSSDUG00000006307	-	90	44.865
ENSSDUG00000003823	rab18a	79	45.679	ENSSDUG00000002934	-	74	45.679
ENSSDUG00000003823	rab18a	95	45.918	ENSSDUG00000022535	RAB1A	82	50.299
ENSSDUG00000003823	rab18a	84	39.306	ENSSDUG00000021882	rab6ba	81	39.306
ENSSDUG00000003823	rab18a	76	44.586	ENSSDUG00000006260	rab25b	80	44.586
ENSSDUG00000003823	rab18a	82	35.882	ENSSDUG00000010675	si:ch73-116o1.2	79	35.260
ENSSDUG00000003823	rab18a	84	37.209	ENSSDUG00000023508	rab23	75	37.662
ENSSDUG00000003823	rab18a	96	40.887	ENSSDUG00000023008	rab5c	76	43.452
ENSSDUG00000003823	rab18a	77	32.099	ENSSDUG00000007311	rhebl1	85	32.099
ENSSDUG00000003823	rab18a	80	42.683	ENSSDUG00000004633	RAB15	77	42.683
ENSSDUG00000003823	rab18a	79	51.235	ENSSDUG00000004445	zgc:171927	75	51.235
ENSSDUG00000003823	rab18a	79	31.928	ENSSDUG00000003036	dnajc27	61	31.928
ENSSDUG00000003823	rab18a	88	38.122	ENSSDUG00000013496	-	85	38.122
ENSSDUG00000003823	rab18a	79	45.062	ENSSDUG00000002580	rab11a	75	45.062
ENSSDUG00000003823	rab18a	79	43.558	ENSSDUG00000005627	rab15	76	43.558
ENSSDUG00000003823	rab18a	84	45.087	ENSSDUG00000005719	si:dkey-16l2.16	82	44.571
ENSSDUG00000003823	rab18a	88	34.239	ENSSDUG00000017131	rab22a	93	39.130
ENSSDUG00000003823	rab18a	88	48.370	ENSSDUG00000013724	rab2a	85	48.370
ENSSDUG00000003823	rab18a	84	38.150	ENSSDUG00000018970	RAB6B	80	38.150
ENSSDUG00000003823	rab18a	99	84.314	ENSSDUG00000005960	rab18b	93	85.340
ENSSDUG00000003823	rab18a	79	48.780	ENSSDUG00000008505	rab12	67	48.780
ENSSDUG00000003823	rab18a	83	40.116	ENSSDUG00000014091	-	81	40.116
ENSSDUG00000003823	rab18a	71	40.816	ENSSDUG00000008151	zgc:101559	63	40.816
ENSSDUG00000003823	rab18a	83	50.000	ENSSDUG00000013325	rab30	83	50.000
ENSSDUG00000003823	rab18a	80	46.951	ENSSDUG00000013050	-	76	46.951
ENSSDUG00000003823	rab18a	81	32.530	ENSSDUG00000019086	hrasb	87	32.530
ENSSDUG00000003823	rab18a	77	44.654	ENSSDUG00000009735	rab25a	76	44.654
ENSSDUG00000003823	rab18a	79	50.000	ENSSDUG00000004698	rab1ba	80	50.000
ENSSDUG00000003823	rab18a	79	45.062	ENSSDUG00000006278	rab11al	75	45.062
ENSSDUG00000003823	rab18a	80	48.171	ENSSDUG00000004551	rab14	76	48.171
ENSSDUG00000003823	rab18a	84	48.256	ENSSDUG00000004950	rab35b	85	48.256
ENSSDUG00000003823	rab18a	74	39.735	ENSSDUG00000006618	RAB17	66	39.735
ENSSDUG00000003823	rab18a	80	40.000	ENSSDUG00000011851	rab42a	76	40.000
ENSSDUG00000003823	rab18a	52	36.111	ENSSDUG00000014258	RAP2B	86	36.364
ENSSDUG00000003823	rab18a	84	39.306	ENSSDUG00000009251	rab6bb	81	39.306

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000003823	rab18a	100	98.039	ENSAPOG00000010760	rab18a	100	98.039	Acanthochromis_polyacanthus
ENSSDUG00000003823	rab18a	100	95.556	ENSACIG00000009617	rab18a	93	95.833	Amphilophus_citrinellus
ENSSDUG00000003823	rab18a	100	97.549	ENSAOCG00000016233	rab18a	100	97.549	Amphiprion_ocellaris
ENSSDUG00000003823	rab18a	100	97.549	ENSAPEG00000005392	rab18a	100	97.549	Amphiprion_percula
ENSSDUG00000003823	rab18a	100	98.529	ENSATEG00000021911	rab18a	100	98.529	Anabas_testudineus
ENSSDUG00000003823	rab18a	100	88.293	ENSACAG00000005463	-	94	90.155	Anolis_carolinensis
ENSSDUG00000003823	rab18a	100	96.569	ENSACLG00000011484	rab18a	100	96.569	Astatotilapia_calliptera
ENSSDUG00000003823	rab18a	100	86.893	ENSCPBG00000015839	-	93	89.529	Chrysemys_picta_bellii
ENSSDUG00000003823	rab18a	96	71.144	ENSCPBG00000027619	-	89	74.444	Chrysemys_picta_bellii
ENSSDUG00000003823	rab18a	97	74.874	ENSCING00000006838	-	95	76.720	Ciona_intestinalis
ENSSDUG00000003823	rab18a	97	73.869	ENSCSAVG00000010348	-	97	74.611	Ciona_savignyi
ENSSDUG00000003823	rab18a	100	98.039	ENSCSEG00000011816	rab18a	100	98.039	Cynoglossus_semilaevis
ENSSDUG00000003823	rab18a	96	94.388	ENSCVAG00000015451	rab18a	96	94.388	Cyprinodon_variegatus
ENSSDUG00000003823	rab18a	100	81.951	ENSDARG00000055291	rab18a	92	85.185	Danio_rerio
ENSSDUG00000003823	rab18a	100	94.146	ENSELUG00000003805	rab18a	93	94.764	Esox_lucius
ENSSDUG00000003823	rab18a	96	95.918	ENSFHEG00000019455	rab18a	96	95.918	Fundulus_heteroclitus
ENSSDUG00000003823	rab18a	94	94.764	ENSGAFG00000002790	rab18a	94	94.792	Gambusia_affinis
ENSSDUG00000003823	rab18a	100	86.893	ENSGAGG00000015642	-	93	89.529	Gopherus_agassizii
ENSSDUG00000003823	rab18a	100	96.569	ENSHBUG00000001518	rab18a	100	96.569	Haplochromis_burtoni
ENSSDUG00000003823	rab18a	99	97.537	ENSLBEG00000005861	rab18a	95	97.537	Labrus_bergylta
ENSSDUG00000003823	rab18a	93	90.526	ENSLACG00000009310	rab18a	92	90.526	Latimeria_chalumnae
ENSSDUG00000003823	rab18a	100	90.244	ENSLOCG00000007491	rab18a	93	90.576	Lepisosteus_oculatus
ENSSDUG00000003823	rab18a	100	97.549	ENSMAMG00000014320	rab18a	100	97.549	Mastacembelus_armatus
ENSSDUG00000003823	rab18a	100	96.078	ENSMZEG00005017235	rab18a	94	96.875	Maylandia_zebra
ENSSDUG00000003823	rab18a	100	99.020	ENSMALG00000009813	rab18a	100	99.020	Monopterus_albus
ENSSDUG00000003823	rab18a	100	96.569	ENSNBRG00000013507	rab18a	100	96.569	Neolamprologus_brichardi
ENSSDUG00000003823	rab18a	100	95.098	ENSORLG00000004624	rab18a	100	95.098	Oryzias_latipes
ENSSDUG00000003823	rab18a	100	95.588	ENSORLG00020008333	rab18a	100	95.588	Oryzias_latipes_hni
ENSSDUG00000003823	rab18a	100	95.098	ENSORLG00015004739	rab18a	100	95.098	Oryzias_latipes_hsok
ENSSDUG00000003823	rab18a	100	94.608	ENSOMEG00000020605	rab18a	94	94.792	Oryzias_melastigma
ENSSDUG00000003823	rab18a	100	88.293	ENSPKIG00000009825	rab18a	92	91.534	Paramormyrops_kingsleyae
ENSSDUG00000003823	rab18a	100	93.137	ENSPMGG00000020409	-	94	93.750	Periophthalmus_magnuspinnatus
ENSSDUG00000003823	rab18a	94	95.288	ENSPFOG00000007571	rab18a	94	95.312	Poecilia_formosa
ENSSDUG00000003823	rab18a	94	95.288	ENSPLAG00000010104	rab18a	94	95.312	Poecilia_latipinna
ENSSDUG00000003823	rab18a	94	95.288	ENSPMEG00000013085	rab18a	94	95.312	Poecilia_mexicana
ENSSDUG00000003823	rab18a	94	95.288	ENSPREG00000005923	rab18a	78	95.312	Poecilia_reticulata
ENSSDUG00000003823	rab18a	100	96.569	ENSPNYG00000007064	rab18a	100	96.569	Pundamilia_nyererei
ENSSDUG00000003823	rab18a	99	81.592	ENSPNAG00000011548	rab18a	95	84.211	Pygocentrus_nattereri
ENSSDUG00000003823	rab18a	100	91.707	ENSSFOG00015017444	rab18a	78	92.632	Scleropages_formosus
ENSSDUG00000003823	rab18a	100	96.585	ENSSMAG00000002969	rab18a	100	96.585	Scophthalmus_maximus
ENSSDUG00000003823	rab18a	100	100.000	ENSSLDG00000006977	rab18a	100	100.000	Seriola_lalandi_dorsalis
ENSSDUG00000003823	rab18a	93	90.476	ENSSPUG00000017677	-	92	90.000	Sphenodon_punctatus
ENSSDUG00000003823	rab18a	100	93.627	ENSTRUG00000004984	rab18a	94	93.750	Takifugu_rubripes
ENSSDUG00000003823	rab18a	100	88.835	ENSUMAG00000015574	-	91	92.021	Ursus_maritimus
ENSSDUG00000003823	rab18a	100	89.320	ENSXETG00000004556	rab18	93	91.667	Xenopus_tropicalis
ENSSDUG00000003823	rab18a	94	95.288	ENSXMAG00000024122	rab18a	94	95.312	Xiphophorus_maculatus