EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000003846 (Gene tree)
Gene ID: 111226448
Gene Symbol: rbm22
Alias: fb37a01|fc62e03|fe05c04|wu:fb37a01|wu:fc62e03|wu:fe05c04|zgc:77910
Full Name: RNA binding motif protein 22
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 6231 bases
Position: chrBDQW01000160.1:553311-559541
Accession: 111226448
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000005208	RRM_1	PF00076.22	3.4e-10	1	1
ENSSDUP00000005239	RRM_1	PF00076.22	3.8e-10	1	1
ENSSDUP00000005227	RRM_1	PF00076.22	6.4e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000005340	-	3084	-	ENSSDUP00000005239	465 (aa)	-	-
ENSSDUT00000005309	-	2787	XM_022751608	ENSSDUP00000005208	427 (aa)	XP_022607329	UPI000BBF285E
ENSSDUT00000005327	-	1278	-	ENSSDUP00000005227	425 (aa)	-	-

Gene Model

Click here to download ENSSDUG00000003846's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000003846's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000003846	rbm22	99	86.792	ENSG00000086589	RBM22	100	90.323	Homo_sapiens
ENSSDUG00000003846	rbm22	100	98.126	ENSAPOG00000010338	rbm22	100	98.126	Acanthochromis_polyacanthus
ENSSDUG00000003846	rbm22	99	86.792	ENSAMEG00000004544	RBM22	99	86.321	Ailuropoda_melanoleuca
ENSSDUG00000003846	rbm22	100	93.647	ENSACIG00000016372	rbm22	100	91.014	Amphilophus_citrinellus
ENSSDUG00000003846	rbm22	100	98.126	ENSAOCG00000007179	rbm22	100	98.126	Amphiprion_ocellaris
ENSSDUG00000003846	rbm22	100	98.126	ENSAPEG00000016689	rbm22	100	98.126	Amphiprion_percula
ENSSDUG00000003846	rbm22	100	98.829	ENSATEG00000008286	rbm22	100	98.829	Anabas_testudineus
ENSSDUG00000003846	rbm22	98	83.532	ENSAPLG00000016408	RBM22	98	83.294	Anas_platyrhynchos
ENSSDUG00000003846	rbm22	99	83.333	ENSACAG00000014750	RBM22	99	85.545	Anolis_carolinensis
ENSSDUG00000003846	rbm22	91	78.920	ENSANAG00000019688	-	99	78.406	Aotus_nancymaae
ENSSDUG00000003846	rbm22	99	86.557	ENSANAG00000033743	-	99	86.085	Aotus_nancymaae
ENSSDUG00000003846	rbm22	100	97.658	ENSACLG00000008863	rbm22	100	97.658	Astatotilapia_calliptera
ENSSDUG00000003846	rbm22	100	85.047	ENSAMXG00000018529	-	100	86.682	Astyanax_mexicanus
ENSSDUG00000003846	rbm22	99	86.651	ENSAMXG00000038080	rbm22	99	82.338	Astyanax_mexicanus
ENSSDUG00000003846	rbm22	99	86.792	ENSBTAG00000030366	RBM22	99	86.321	Bos_taurus
ENSSDUG00000003846	rbm22	96	52.518	WBGene00011722	rbm-22	76	61.812	Caenorhabditis_elegans
ENSSDUG00000003846	rbm22	99	86.557	ENSCJAG00000020963	RBM22	99	86.085	Callithrix_jacchus
ENSSDUG00000003846	rbm22	85	87.397	ENSCJAG00000013247	-	85	87.397	Callithrix_jacchus
ENSSDUG00000003846	rbm22	99	86.385	ENSCAFG00000018082	RBM22	99	85.915	Canis_familiaris
ENSSDUG00000003846	rbm22	99	86.792	ENSCAFG00020023671	RBM22	99	86.321	Canis_lupus_dingo
ENSSDUG00000003846	rbm22	99	86.792	ENSCHIG00000015561	RBM22	99	86.321	Capra_hircus
ENSSDUG00000003846	rbm22	88	74.799	ENSTSYG00000037586	-	99	74.263	Carlito_syrichta
ENSSDUG00000003846	rbm22	99	86.792	ENSTSYG00000003939	-	99	86.321	Carlito_syrichta
ENSSDUG00000003846	rbm22	94	82.630	ENSCAPG00000002598	RBM22	95	83.461	Cavia_aperea
ENSSDUG00000003846	rbm22	99	86.792	ENSCPOG00000001946	RBM22	99	86.321	Cavia_porcellus
ENSSDUG00000003846	rbm22	99	86.557	ENSCCAG00000033546	RBM22	99	86.085	Cebus_capucinus
ENSSDUG00000003846	rbm22	99	86.792	ENSCATG00000042133	RBM22	99	86.321	Cercocebus_atys
ENSSDUG00000003846	rbm22	99	64.303	ENSCLAG00000014221	-	99	61.298	Chinchilla_lanigera
ENSSDUG00000003846	rbm22	99	70.213	ENSCLAG00000007106	-	99	69.740	Chinchilla_lanigera
ENSSDUG00000003846	rbm22	99	86.792	ENSCLAG00000010842	-	99	86.321	Chinchilla_lanigera
ENSSDUG00000003846	rbm22	93	87.437	ENSCSAG00000019006	-	93	89.589	Chlorocebus_sabaeus
ENSSDUG00000003846	rbm22	99	86.321	ENSCHOG00000001041	-	99	85.849	Choloepus_hoffmanni
ENSSDUG00000003846	rbm22	70	89.562	ENSCHOG00000004192	-	98	89.384	Choloepus_hoffmanni
ENSSDUG00000003846	rbm22	98	86.223	ENSCHOG00000013522	-	99	85.748	Choloepus_hoffmanni
ENSSDUG00000003846	rbm22	98	86.461	ENSCPBG00000010094	RBM22	99	85.986	Chrysemys_picta_bellii
ENSSDUG00000003846	rbm22	98	63.033	ENSCING00000005843	zf(c3h)-12	99	62.945	Ciona_intestinalis
ENSSDUG00000003846	rbm22	98	62.500	ENSCSAVG00000009145	-	99	63.658	Ciona_savignyi
ENSSDUG00000003846	rbm22	99	86.792	ENSCANG00000025232	RBM22	99	86.321	Colobus_angolensis_palliatus
ENSSDUG00000003846	rbm22	99	86.792	ENSCGRG00001015110	Rbm22	99	86.321	Cricetulus_griseus_chok1gshd
ENSSDUG00000003846	rbm22	98	82.381	ENSCGRG00000011751	Rbm22	99	81.429	Cricetulus_griseus_crigri
ENSSDUG00000003846	rbm22	99	95.529	ENSCSEG00000010790	rbm22	99	95.529	Cynoglossus_semilaevis
ENSSDUG00000003846	rbm22	99	95.047	ENSCVAG00000010670	rbm22	99	95.047	Cyprinodon_variegatus
ENSSDUG00000003846	rbm22	99	88.525	ENSDARG00000010238	rbm22	99	88.290	Danio_rerio
ENSSDUG00000003846	rbm22	99	86.792	ENSDNOG00000011166	RBM22	99	86.321	Dasypus_novemcinctus
ENSSDUG00000003846	rbm22	99	67.612	ENSDORG00000005329	Rbm22	99	67.376	Dipodomys_ordii
ENSSDUG00000003846	rbm22	82	63.920	FBgn0037220	CG14641	76	67.089	Drosophila_melanogaster
ENSSDUG00000003846	rbm22	90	91.489	ENSEBUG00000016742	-	98	91.489	Eptatretus_burgeri
ENSSDUG00000003846	rbm22	99	86.792	ENSEASG00005002681	RBM22	99	86.321	Equus_asinus_asinus
ENSSDUG00000003846	rbm22	99	77.350	ENSECAG00000014940	RBM22	79	89.589	Equus_caballus
ENSSDUG00000003846	rbm22	99	70.047	ENSEEUG00000009778	-	99	69.575	Erinaceus_europaeus
ENSSDUG00000003846	rbm22	99	85.142	ENSEEUG00000005638	-	99	84.906	Erinaceus_europaeus
ENSSDUG00000003846	rbm22	100	90.867	ENSELUG00000001106	rbm22	96	91.335	Esox_lucius
ENSSDUG00000003846	rbm22	99	86.792	ENSFCAG00000018845	RBM22	99	86.321	Felis_catus
ENSSDUG00000003846	rbm22	99	86.557	ENSFALG00000008051	RBM22	99	86.085	Ficedula_albicollis
ENSSDUG00000003846	rbm22	99	86.792	ENSFDAG00000020067	RBM22	99	86.321	Fukomys_damarensis
ENSSDUG00000003846	rbm22	100	95.550	ENSFHEG00000014032	rbm22	100	95.550	Fundulus_heteroclitus
ENSSDUG00000003846	rbm22	98	92.417	ENSGMOG00000010186	rbm22	100	93.839	Gadus_morhua
ENSSDUG00000003846	rbm22	99	86.557	ENSGALG00000004555	RBM22	99	86.085	Gallus_gallus
ENSSDUG00000003846	rbm22	99	95.765	ENSGAFG00000008621	rbm22	99	95.765	Gambusia_affinis
ENSSDUG00000003846	rbm22	99	95.082	ENSGACG00000018027	rbm22	100	95.316	Gasterosteus_aculeatus
ENSSDUG00000003846	rbm22	98	86.698	ENSGAGG00000024305	RBM22	99	86.223	Gopherus_agassizii
ENSSDUG00000003846	rbm22	99	86.792	ENSGGOG00000012947	RBM22	99	86.321	Gorilla_gorilla
ENSSDUG00000003846	rbm22	100	97.658	ENSHBUG00000002941	rbm22	100	97.658	Haplochromis_burtoni
ENSSDUG00000003846	rbm22	99	86.792	ENSHGLG00000008488	RBM22	99	86.321	Heterocephalus_glaber_female
ENSSDUG00000003846	rbm22	97	86.538	ENSHGLG00100006872	RBM22	98	86.058	Heterocephalus_glaber_male
ENSSDUG00000003846	rbm22	85	93.407	ENSHCOG00000016334	rbm22	92	93.425	Hippocampus_comes
ENSSDUG00000003846	rbm22	99	86.651	ENSIPUG00000019751	rbm22	99	86.417	Ictalurus_punctatus
ENSSDUG00000003846	rbm22	99	73.005	ENSSTOG00000029346	-	98	74.178	Ictidomys_tridecemlineatus
ENSSDUG00000003846	rbm22	99	72.642	ENSSTOG00000027197	RBM22	99	70.755	Ictidomys_tridecemlineatus
ENSSDUG00000003846	rbm22	99	86.792	ENSJJAG00000009565	Rbm22	99	86.321	Jaculus_jaculus
ENSSDUG00000003846	rbm22	100	96.253	ENSKMAG00000004354	rbm22	100	96.253	Kryptolebias_marmoratus
ENSSDUG00000003846	rbm22	98	97.852	ENSLBEG00000027750	rbm22	88	97.852	Labrus_bergylta
ENSSDUG00000003846	rbm22	99	90.398	ENSLOCG00000010989	rbm22	99	90.632	Lepisosteus_oculatus
ENSSDUG00000003846	rbm22	99	86.792	ENSLAFG00000006638	RBM22	99	86.321	Loxodonta_africana
ENSSDUG00000003846	rbm22	99	86.792	ENSMFAG00000004034	RBM22	99	86.321	Macaca_fascicularis
ENSSDUG00000003846	rbm22	99	86.792	ENSMMUG00000020683	RBM22	99	86.321	Macaca_mulatta
ENSSDUG00000003846	rbm22	99	86.792	ENSMNEG00000035500	RBM22	99	86.321	Macaca_nemestrina
ENSSDUG00000003846	rbm22	99	86.792	ENSMLEG00000034825	RBM22	99	86.321	Mandrillus_leucophaeus
ENSSDUG00000003846	rbm22	100	99.063	ENSMAMG00000007370	rbm22	100	99.063	Mastacembelus_armatus
ENSSDUG00000003846	rbm22	100	97.658	ENSMZEG00005013001	rbm22	100	97.658	Maylandia_zebra
ENSSDUG00000003846	rbm22	99	86.557	ENSMGAG00000006298	RBM22	99	86.085	Meleagris_gallopavo
ENSSDUG00000003846	rbm22	99	86.792	ENSMAUG00000001133	Rbm22	99	86.321	Mesocricetus_auratus
ENSSDUG00000003846	rbm22	99	86.792	ENSMICG00000033712	RBM22	99	86.321	Microcebus_murinus
ENSSDUG00000003846	rbm22	99	81.132	ENSMOCG00000018311	Rbm22	99	80.660	Microtus_ochrogaster
ENSSDUG00000003846	rbm22	100	95.550	ENSMMOG00000003192	rbm22	100	95.550	Mola_mola
ENSSDUG00000003846	rbm22	99	85.849	ENSMODG00000009574	-	99	85.377	Monodelphis_domestica
ENSSDUG00000003846	rbm22	99	80.986	ENSMODG00000006398	-	99	78.873	Monodelphis_domestica
ENSSDUG00000003846	rbm22	100	98.595	ENSMALG00000013964	rbm22	100	98.595	Monopterus_albus
ENSSDUG00000003846	rbm22	99	86.792	MGP_CAROLIEiJ_G0022307	Rbm22	99	86.321	Mus_caroli
ENSSDUG00000003846	rbm22	99	86.792	ENSMUSG00000024604	Rbm22	99	86.321	Mus_musculus
ENSSDUG00000003846	rbm22	99	86.792	MGP_PahariEiJ_G0019037	Rbm22	99	86.321	Mus_pahari
ENSSDUG00000003846	rbm22	99	86.792	MGP_SPRETEiJ_G0023219	Rbm22	99	86.321	Mus_spretus
ENSSDUG00000003846	rbm22	99	86.792	ENSMPUG00000013760	RBM22	99	86.321	Mustela_putorius_furo
ENSSDUG00000003846	rbm22	99	85.579	ENSMLUG00000003461	-	99	84.634	Myotis_lucifugus
ENSSDUG00000003846	rbm22	99	86.792	ENSMLUG00000009040	RBM22	99	86.321	Myotis_lucifugus
ENSSDUG00000003846	rbm22	99	86.792	ENSNGAG00000018233	Rbm22	99	86.321	Nannospalax_galili
ENSSDUG00000003846	rbm22	89	96.859	ENSNBRG00000010458	rbm22	96	96.859	Neolamprologus_brichardi
ENSSDUG00000003846	rbm22	99	86.792	ENSNLEG00000010397	-	99	86.321	Nomascus_leucogenys
ENSSDUG00000003846	rbm22	98	77.566	ENSMEUG00000009348	-	99	76.611	Notamacropus_eugenii
ENSSDUG00000003846	rbm22	70	94.872	ENSMEUG00000001573	-	60	94.872	Notamacropus_eugenii
ENSSDUG00000003846	rbm22	99	87.028	ENSOPRG00000008481	-	99	86.557	Ochotona_princeps
ENSSDUG00000003846	rbm22	99	67.773	ENSOPRG00000016612	-	99	68.246	Ochotona_princeps
ENSSDUG00000003846	rbm22	99	85.849	ENSODEG00000005016	RBM22	99	85.377	Octodon_degus
ENSSDUG00000003846	rbm22	99	97.176	ENSONIG00000013049	rbm22	100	97.176	Oreochromis_niloticus
ENSSDUG00000003846	rbm22	99	85.047	ENSOANG00000002314	RBM22	99	84.670	Ornithorhynchus_anatinus
ENSSDUG00000003846	rbm22	99	86.792	ENSOCUG00000011532	RBM22	99	86.321	Oryctolagus_cuniculus
ENSSDUG00000003846	rbm22	99	92.471	ENSORLG00000004975	rbm22	99	92.471	Oryzias_latipes
ENSSDUG00000003846	rbm22	99	92.471	ENSORLG00020012969	rbm22	99	92.471	Oryzias_latipes_hni
ENSSDUG00000003846	rbm22	99	92.471	ENSORLG00015022508	rbm22	99	92.471	Oryzias_latipes_hsok
ENSSDUG00000003846	rbm22	99	92.471	ENSOMEG00000004904	rbm22	99	92.471	Oryzias_melastigma
ENSSDUG00000003846	rbm22	99	82.864	ENSOGAG00000011086	RBM22	99	82.394	Otolemur_garnettii
ENSSDUG00000003846	rbm22	99	85.915	ENSOARG00000007633	RBM22	99	84.507	Ovis_aries
ENSSDUG00000003846	rbm22	99	86.792	ENSPPAG00000034432	RBM22	99	86.321	Pan_paniscus
ENSSDUG00000003846	rbm22	99	86.792	ENSPPRG00000011577	RBM22	99	86.321	Panthera_pardus
ENSSDUG00000003846	rbm22	99	86.792	ENSPTIG00000004453	RBM22	99	86.321	Panthera_tigris_altaica
ENSSDUG00000003846	rbm22	99	86.792	ENSPTRG00000017423	RBM22	99	86.321	Pan_troglodytes
ENSSDUG00000003846	rbm22	99	86.792	ENSPANG00000011297	RBM22	99	86.321	Papio_anubis
ENSSDUG00000003846	rbm22	99	87.822	ENSPKIG00000010315	rbm22	99	87.588	Paramormyrops_kingsleyae
ENSSDUG00000003846	rbm22	85	86.538	ENSPKIG00000019326	rbm22	83	88.493	Paramormyrops_kingsleyae
ENSSDUG00000003846	rbm22	98	86.698	ENSPSIG00000012818	RBM22	99	86.223	Pelodiscus_sinensis
ENSSDUG00000003846	rbm22	98	90.215	ENSPMGG00000017638	rbm22	100	89.260	Periophthalmus_magnuspinnatus
ENSSDUG00000003846	rbm22	99	86.557	ENSPEMG00000001753	Rbm22	99	86.085	Peromyscus_maniculatus_bairdii
ENSSDUG00000003846	rbm22	78	68.103	ENSPMAG00000007317	-	99	66.859	Petromyzon_marinus
ENSSDUG00000003846	rbm22	99	73.821	ENSPCIG00000015088	RBM22	99	73.349	Phascolarctos_cinereus
ENSSDUG00000003846	rbm22	99	94.824	ENSPFOG00000005625	rbm22	99	94.824	Poecilia_formosa
ENSSDUG00000003846	rbm22	99	94.353	ENSPLAG00000006344	rbm22	99	94.353	Poecilia_latipinna
ENSSDUG00000003846	rbm22	99	90.824	ENSPMEG00000007992	rbm22	99	94.615	Poecilia_mexicana
ENSSDUG00000003846	rbm22	99	95.765	ENSPREG00000003546	rbm22	99	95.765	Poecilia_reticulata
ENSSDUG00000003846	rbm22	99	86.792	ENSPPYG00000015955	RBM22	99	86.321	Pongo_abelii
ENSSDUG00000003846	rbm22	73	100.000	ENSPCAG00000015091	RBM22	82	100.000	Procavia_capensis
ENSSDUG00000003846	rbm22	99	86.792	ENSPVAG00000014231	RBM22	99	86.321	Pteropus_vampyrus
ENSSDUG00000003846	rbm22	88	92.573	ENSPNYG00000000380	rbm22	99	92.573	Pundamilia_nyererei
ENSSDUG00000003846	rbm22	99	86.651	ENSPNAG00000002687	rbm22	99	86.417	Pygocentrus_nattereri
ENSSDUG00000003846	rbm22	100	87.354	ENSPNAG00000010001	-	100	88.551	Pygocentrus_nattereri
ENSSDUG00000003846	rbm22	99	86.321	ENSRNOG00000019235	Rbm22	99	85.849	Rattus_norvegicus
ENSSDUG00000003846	rbm22	99	86.792	ENSRBIG00000041683	RBM22	99	86.321	Rhinopithecus_bieti
ENSSDUG00000003846	rbm22	96	90.419	ENSRROG00000041637	RBM22	99	86.321	Rhinopithecus_roxellana
ENSSDUG00000003846	rbm22	99	86.321	ENSSBOG00000035400	-	99	85.849	Saimiri_boliviensis_boliviensis
ENSSDUG00000003846	rbm22	99	85.613	ENSSHAG00000017734	-	99	85.142	Sarcophilus_harrisii
ENSSDUG00000003846	rbm22	99	89.227	ENSSFOG00015014955	rbm22	99	88.993	Scleropages_formosus
ENSSDUG00000003846	rbm22	99	85.412	ENSSFOG00015022259	rbm22	99	85.412	Scleropages_formosus
ENSSDUG00000003846	rbm22	100	98.126	ENSSMAG00000002921	rbm22	100	98.126	Scophthalmus_maximus
ENSSDUG00000003846	rbm22	100	100.000	ENSSLDG00000003804	rbm22	100	100.000	Seriola_lalandi_dorsalis
ENSSDUG00000003846	rbm22	99	84.038	ENSSPUG00000003986	RBM22	99	86.019	Sphenodon_punctatus
ENSSDUG00000003846	rbm22	100	98.361	ENSSPAG00000000383	rbm22	100	98.361	Stegastes_partitus
ENSSDUG00000003846	rbm22	99	86.588	ENSSSCG00000023231	RBM22	99	86.118	Sus_scrofa
ENSSDUG00000003846	rbm22	99	86.557	ENSTGUG00000000850	RBM22	99	86.085	Taeniopygia_guttata
ENSSDUG00000003846	rbm22	100	94.379	ENSTRUG00000004724	rbm22	100	94.379	Takifugu_rubripes
ENSSDUG00000003846	rbm22	87	94.872	ENSTBEG00000005617	RBM22	87	94.872	Tupaia_belangeri
ENSSDUG00000003846	rbm22	99	86.792	ENSTTRG00000012778	RBM22	99	86.321	Tursiops_truncatus
ENSSDUG00000003846	rbm22	99	86.792	ENSUAMG00000025133	RBM22	99	86.321	Ursus_americanus
ENSSDUG00000003846	rbm22	99	86.792	ENSUMAG00000003651	RBM22	99	86.321	Ursus_maritimus
ENSSDUG00000003846	rbm22	99	86.792	ENSVVUG00000007193	RBM22	99	86.321	Vulpes_vulpes
ENSSDUG00000003846	rbm22	98	82.381	ENSXETG00000020435	rbm22	99	83.215	Xenopus_tropicalis
ENSSDUG00000003846	rbm22	99	91.294	ENSXCOG00000003316	rbm22	99	91.294	Xiphophorus_couchianus
ENSSDUG00000003846	rbm22	99	95.765	ENSXMAG00000008681	rbm22	99	95.765	Xiphophorus_maculatus