EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000003887 (Gene tree)
Gene ID: 111234408
Gene Symbol: -
Alias: -
Full Name: serine/arginine-rich splicing factor 1
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 2802 bases
Position: chrBDQW01000449.1:4479369-4482170
Accession: 111234408
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000005261	RRM_1	PF00076.22	1.3e-33	1	2
ENSSDUP00000005261	RRM_1	PF00076.22	1.3e-33	2	2
ENSSDUP00000005286	RRM_1	PF00076.22	1.6e-30	1	2
ENSSDUP00000005286	RRM_1	PF00076.22	1.6e-30	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000005387	-	696	-	ENSSDUP00000005286	231 (aa)	-	-
ENSSDUT00000005362	-	1170	XM_022762486	ENSSDUP00000005261	263 (aa)	XP_022618207	UPI000BBEED3E

Gene Model

Click here to download ENSSDUG00000003887's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03040	Spliceosome	KEGG
sdu05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000003887's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000003887	-	98	74.708	ENSSDUG00000003929	-	84	78.302
ENSSDUG00000003887	-	74	67.179	ENSSDUG00000018908	srsf9	73	67.526
ENSSDUG00000003887	-	79	84.135	ENSSDUG00000011303	-	83	84.135
ENSSDUG00000003887	-	93	38.683	ENSSDUG00000005766	srsf5b	71	38.164
ENSSDUG00000003887	-	68	41.209	ENSSDUG00000006103	srsf5a	59	42.703
ENSSDUG00000003887	-	79	40.654	ENSSDUG00000016097	srsf6a	57	36.538

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000003887	-	75	89.286	ENSACIG00000002623	-	95	89.286	Amphilophus_citrinellus
ENSSDUG00000003887	-	92	91.701	ENSACLG00000021693	-	99	80.237	Astatotilapia_calliptera
ENSSDUG00000003887	-	79	84.615	ENSACLG00000005676	-	78	84.615	Astatotilapia_calliptera
ENSSDUG00000003887	-	94	55.285	WBGene00004700	rsp-3	75	64.500	Caenorhabditis_elegans
ENSSDUG00000003887	-	71	53.403	ENSCING00000000257	-	76	59.603	Ciona_intestinalis
ENSSDUG00000003887	-	75	68.528	ENSCING00000007375	-	76	67.513	Ciona_intestinalis
ENSSDUG00000003887	-	75	67.513	ENSCSAVG00000006093	-	91	65.990	Ciona_savignyi
ENSSDUG00000003887	-	56	58.219	ENSCSAVG00000003567	-	77	57.534	Ciona_savignyi
ENSSDUG00000003887	-	75	65.990	FBgn0283477	SF2	73	65.482	Drosophila_melanogaster
ENSSDUG00000003887	-	96	71.825	ENSEBUG00000009582	-	82	74.879	Eptatretus_burgeri
ENSSDUG00000003887	-	79	87.500	ENSFHEG00000017425	-	97	86.224	Fundulus_heteroclitus
ENSSDUG00000003887	-	75	83.673	ENSGMOG00000010606	-	96	83.673	Gadus_morhua
ENSSDUG00000003887	-	81	88.208	ENSGAFG00000000609	-	99	81.538	Gambusia_affinis
ENSSDUG00000003887	-	79	85.096	ENSGAFG00000012721	-	78	85.096	Gambusia_affinis
ENSSDUG00000003887	-	74	83.590	ENSGACG00000011094	-	96	83.590	Gasterosteus_aculeatus
ENSSDUG00000003887	-	92	90.871	ENSHBUG00000015576	-	80	89.952	Haplochromis_burtoni
ENSSDUG00000003887	-	54	59.859	ENSHBUG00000015600	-	95	59.859	Haplochromis_burtoni
ENSSDUG00000003887	-	80	78.972	ENSHCOG00000008016	-	79	80.214	Hippocampus_comes
ENSSDUG00000003887	-	98	80.153	ENSMFAG00000034223	-	66	83.491	Macaca_fascicularis
ENSSDUG00000003887	-	92	90.871	ENSMZEG00005019071	-	98	88.265	Maylandia_zebra
ENSSDUG00000003887	-	79	84.615	ENSMZEG00005007947	-	78	84.615	Maylandia_zebra
ENSSDUG00000003887	-	79	86.124	ENSMMOG00000018849	-	79	87.081	Mola_mola
ENSSDUG00000003887	-	92	91.701	ENSNBRG00000008134	-	77	92.344	Neolamprologus_brichardi
ENSSDUG00000003887	-	79	84.615	ENSNBRG00000019981	-	78	84.615	Neolamprologus_brichardi
ENSSDUG00000003887	-	70	62.295	ENSOPRG00000004745	-	98	61.350	Ochotona_princeps
ENSSDUG00000003887	-	98	93.822	ENSONIG00000004857	-	100	93.822	Oreochromis_niloticus
ENSSDUG00000003887	-	50	88.235	ENSOANG00000007320	-	54	95.455	Ornithorhynchus_anatinus
ENSSDUG00000003887	-	68	52.695	ENSOCUG00000026856	-	97	50.000	Oryctolagus_cuniculus
ENSSDUG00000003887	-	79	88.995	ENSORLG00000005314	-	76	90.431	Oryzias_latipes
ENSSDUG00000003887	-	79	88.995	ENSORLG00015015497	-	76	90.431	Oryzias_latipes_hsok
ENSSDUG00000003887	-	79	91.388	ENSOMEG00000017711	-	76	92.823	Oryzias_melastigma
ENSSDUG00000003887	-	79	83.412	ENSPLAG00000019553	-	92	82.915	Poecilia_latipinna
ENSSDUG00000003887	-	74	84.615	ENSPLAG00000019613	-	71	84.615	Poecilia_latipinna
ENSSDUG00000003887	-	81	87.264	ENSPREG00000016792	-	99	80.769	Poecilia_reticulata
ENSSDUG00000003887	-	79	84.615	ENSPNYG00000017115	-	78	84.615	Pundamilia_nyererei
ENSSDUG00000003887	-	92	91.701	ENSPNYG00000020651	-	77	92.344	Pundamilia_nyererei
ENSSDUG00000003887	-	85	87.054	ENSSFOG00015004989	-	72	85.849	Scleropages_formosus
ENSSDUG00000003887	-	79	80.769	ENSTRUG00000017058	-	79	82.212	Takifugu_rubripes
ENSSDUG00000003887	-	81	76.526	ENSTNIG00000009993	-	80	79.426	Tetraodon_nigroviridis
ENSSDUG00000003887	-	82	86.512	ENSXCOG00000017888	-	99	82.000	Xiphophorus_couchianus
ENSSDUG00000003887	-	79	83.412	ENSXCOG00000009643	-	78	83.824	Xiphophorus_couchianus
ENSSDUG00000003887	-	81	87.736	ENSXMAG00000010797	-	99	81.154	Xiphophorus_maculatus