EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000003903 (Gene tree)
Gene ID: 111223594
Gene Symbol: sf1
Alias: wu:fc09f06|znf162
Full Name: splicing factor 1
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 12470 bases
Position: chrBDQW01000111.1:1791849-1804318
Accession: 111223594
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000005281	KH_1	PF00013.29	3.5e-06	1	1
ENSSDUP00000005281	zf-CCHC	PF00098.23	0.00045	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000005382	-	4471	XM_022747799	ENSSDUP00000005281	655 (aa)	XP_022603520	-

Gene Model

Click here to download ENSSDUG00000003903's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000003903's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000003903	sf1	73	94.990	ENSAPOG00000012341	sf1	67	94.311	Acanthochromis_polyacanthus
ENSSDUG00000003903	sf1	98	95.938	ENSAOCG00000010934	sf1	67	94.530	Amphiprion_ocellaris
ENSSDUG00000003903	sf1	98	95.938	ENSAPEG00000009498	sf1	67	94.530	Amphiprion_percula
ENSSDUG00000003903	sf1	98	94.844	ENSATEG00000001894	sf1	94	94.844	Anabas_testudineus
ENSSDUG00000003903	sf1	63	76.923	ENSANAG00000026664	-	97	76.540	Aotus_nancymaae
ENSSDUG00000003903	sf1	84	65.120	ENSANAG00000022607	-	75	79.439	Aotus_nancymaae
ENSSDUG00000003903	sf1	72	84.388	ENSAMXG00000003630	sf1	59	82.969	Astyanax_mexicanus
ENSSDUG00000003903	sf1	63	76.402	ENSBTAG00000001035	SF1	63	80.206	Bos_taurus
ENSSDUG00000003903	sf1	63	76.402	ENSCJAG00000002780	SF1	75	67.823	Callithrix_jacchus
ENSSDUG00000003903	sf1	63	76.402	ENSCAFG00000014239	SF1	59	79.949	Canis_familiaris
ENSSDUG00000003903	sf1	63	76.402	ENSCAFG00020014381	SF1	59	79.949	Canis_lupus_dingo
ENSSDUG00000003903	sf1	61	77.240	ENSCAPG00000010762	SF1	65	81.283	Cavia_aperea
ENSSDUG00000003903	sf1	62	76.905	ENSCPOG00000012290	SF1	59	81.217	Cavia_porcellus
ENSSDUG00000003903	sf1	63	76.402	ENSCCAG00000037881	SF1	97	76.540	Cebus_capucinus
ENSSDUG00000003903	sf1	61	72.030	ENSCCAG00000023781	-	71	79.091	Cebus_capucinus
ENSSDUG00000003903	sf1	63	76.402	ENSCATG00000011564	SF1	90	80.206	Cercocebus_atys
ENSSDUG00000003903	sf1	58	71.859	ENSCHOG00000006008	SF1	66	75.209	Choloepus_hoffmanni
ENSSDUG00000003903	sf1	64	82.588	ENSCPBG00000023763	SF1	51	79.302	Chrysemys_picta_bellii
ENSSDUG00000003903	sf1	62	55.529	ENSCING00000005564	-	83	56.872	Ciona_intestinalis
ENSSDUG00000003903	sf1	70	54.915	ENSCSAVG00000009055	-	60	67.315	Ciona_savignyi
ENSSDUG00000003903	sf1	63	76.402	ENSCANG00000042201	SF1	91	80.206	Colobus_angolensis_palliatus
ENSSDUG00000003903	sf1	63	76.636	ENSCGRG00001003677	Sf1	66	80.720	Cricetulus_griseus_chok1gshd
ENSSDUG00000003903	sf1	61	77.482	ENSCGRG00000001708	Sf1	65	81.818	Cricetulus_griseus_crigri
ENSSDUG00000003903	sf1	98	91.250	ENSCSEG00000014375	sf1	65	91.685	Cynoglossus_semilaevis
ENSSDUG00000003903	sf1	98	90.016	ENSCVAG00000001670	sf1	67	90.810	Cyprinodon_variegatus
ENSSDUG00000003903	sf1	86	82.918	ENSDARG00000008188	sf1	66	90.501	Danio_rerio
ENSSDUG00000003903	sf1	63	76.402	ENSDORG00000016334	Sf1	59	79.949	Dipodomys_ordii
ENSSDUG00000003903	sf1	55	77.540	ENSEEUG00000001058	SF1	83	81.737	Erinaceus_europaeus
ENSSDUG00000003903	sf1	81	79.963	ENSELUG00000013225	sf1	54	89.423	Esox_lucius
ENSSDUG00000003903	sf1	63	76.402	ENSFCAG00000012231	SF1	75	68.279	Felis_catus
ENSSDUG00000003903	sf1	61	77.240	ENSFDAG00000009833	SF1	65	81.283	Fukomys_damarensis
ENSSDUG00000003903	sf1	70	91.266	ENSFHEG00000022656	sf1	67	91.247	Fundulus_heteroclitus
ENSSDUG00000003903	sf1	75	78.049	ENSGMOG00000007469	sf1	61	93.175	Gadus_morhua
ENSSDUG00000003903	sf1	93	89.474	ENSGAFG00000019284	sf1	74	89.934	Gambusia_affinis
ENSSDUG00000003903	sf1	64	82.353	ENSGAGG00000021691	SF1	68	71.370	Gopherus_agassizii
ENSSDUG00000003903	sf1	70	93.668	ENSHBUG00000011598	sf1	67	92.123	Haplochromis_burtoni
ENSSDUG00000003903	sf1	63	76.402	ENSHGLG00000009541	SF1	66	80.206	Heterocephalus_glaber_female
ENSSDUG00000003903	sf1	61	77.240	ENSHGLG00100013879	-	65	81.283	Heterocephalus_glaber_male
ENSSDUG00000003903	sf1	62	67.426	ENSHGLG00100008255	-	73	72.063	Heterocephalus_glaber_male
ENSSDUG00000003903	sf1	72	87.764	ENSHCOG00000011388	sf1	67	88.210	Hippocampus_comes
ENSSDUG00000003903	sf1	56	71.053	ENSSTOG00000024353	-	67	70.681	Ictidomys_tridecemlineatus
ENSSDUG00000003903	sf1	61	77.240	ENSSTOG00000009790	-	59	80.688	Ictidomys_tridecemlineatus
ENSSDUG00000003903	sf1	63	76.636	ENSJJAG00000011788	Sf1	59	80.206	Jaculus_jaculus
ENSSDUG00000003903	sf1	72	90.928	ENSKMAG00000005854	sf1	70	90.393	Kryptolebias_marmoratus
ENSSDUG00000003903	sf1	70	90.343	ENSLBEG00000019836	sf1	62	88.657	Labrus_bergylta
ENSSDUG00000003903	sf1	63	76.794	ENSLACG00000018493	SF1	69	77.690	Latimeria_chalumnae
ENSSDUG00000003903	sf1	70	78.858	ENSLOCG00000002130	sf1	72	80.508	Lepisosteus_oculatus
ENSSDUG00000003903	sf1	63	77.778	ENSLAFG00000007201	SF1	64	81.558	Loxodonta_africana
ENSSDUG00000003903	sf1	63	76.402	ENSMFAG00000033122	SF1	90	80.206	Macaca_fascicularis
ENSSDUG00000003903	sf1	63	76.402	ENSMMUG00000022606	SF1	90	80.526	Macaca_mulatta
ENSSDUG00000003903	sf1	63	76.402	ENSMNEG00000037901	SF1	90	80.206	Macaca_nemestrina
ENSSDUG00000003903	sf1	61	76.794	ENSMLEG00000040706	SF1	89	80.739	Mandrillus_leucophaeus
ENSSDUG00000003903	sf1	98	96.562	ENSMAMG00000001780	sf1	94	96.562	Mastacembelus_armatus
ENSSDUG00000003903	sf1	70	93.668	ENSMZEG00005009196	sf1	67	92.123	Maylandia_zebra
ENSSDUG00000003903	sf1	63	76.636	ENSMAUG00000014064	Sf1	66	80.720	Mesocricetus_auratus
ENSSDUG00000003903	sf1	63	76.402	ENSMICG00000001202	SF1	90	80.000	Microcebus_murinus
ENSSDUG00000003903	sf1	63	76.636	ENSMOCG00000022038	Sf1	66	80.720	Microtus_ochrogaster
ENSSDUG00000003903	sf1	89	88.336	ENSMMOG00000020474	sf1	84	90.702	Mola_mola
ENSSDUG00000003903	sf1	62	77.381	ENSMODG00000029407	SF1	80	80.789	Monodelphis_domestica
ENSSDUG00000003903	sf1	87	86.491	ENSMALG00000020521	sf1	92	88.772	Monopterus_albus
ENSSDUG00000003903	sf1	63	76.636	MGP_CAROLIEiJ_G0022607	Sf1	99	95.113	Mus_caroli
ENSSDUG00000003903	sf1	63	76.636	ENSMUSG00000024949	Sf1	99	95.113	Mus_musculus
ENSSDUG00000003903	sf1	63	76.636	MGP_PahariEiJ_G0014101	Sf1	99	95.113	Mus_pahari
ENSSDUG00000003903	sf1	63	76.636	MGP_SPRETEiJ_G0023518	Sf1	99	95.113	Mus_spretus
ENSSDUG00000003903	sf1	66	73.614	ENSMLUG00000029800	-	65	76.864	Myotis_lucifugus
ENSSDUG00000003903	sf1	63	76.636	ENSNGAG00000005550	Sf1	66	80.463	Nannospalax_galili
ENSSDUG00000003903	sf1	70	87.991	ENSNBRG00000017606	sf1	72	85.516	Neolamprologus_brichardi
ENSSDUG00000003903	sf1	63	76.402	ENSNLEG00000005236	-	91	80.206	Nomascus_leucogenys
ENSSDUG00000003903	sf1	60	77.805	ENSMEUG00000013424	SF1	68	81.402	Notamacropus_eugenii
ENSSDUG00000003903	sf1	70	93.668	ENSONIG00000015728	sf1	67	92.123	Oreochromis_niloticus
ENSSDUG00000003903	sf1	51	74.566	ENSOANG00000002909	SF1	59	89.879	Ornithorhynchus_anatinus
ENSSDUG00000003903	sf1	62	76.905	ENSOCUG00000026486	SF1	59	80.577	Oryctolagus_cuniculus
ENSSDUG00000003903	sf1	72	88.161	ENSORLG00000011853	sf1	66	89.059	Oryzias_latipes
ENSSDUG00000003903	sf1	72	88.584	ENSORLG00020011834	sf1	66	89.497	Oryzias_latipes_hni
ENSSDUG00000003903	sf1	70	88.720	ENSORLG00015012855	sf1	66	89.059	Oryzias_latipes_hsok
ENSSDUG00000003903	sf1	72	90.063	ENSOMEG00000005210	sf1	67	90.591	Oryzias_melastigma
ENSSDUG00000003903	sf1	63	76.402	ENSOARG00000009166	SF1	66	79.949	Ovis_aries
ENSSDUG00000003903	sf1	62	78.043	ENSPPAG00000002799	-	97	77.053	Pan_paniscus
ENSSDUG00000003903	sf1	61	77.240	ENSPPRG00000013566	SF1	58	80.688	Panthera_pardus
ENSSDUG00000003903	sf1	62	76.777	ENSPTIG00000016141	SF1	67	80.679	Panthera_tigris_altaica
ENSSDUG00000003903	sf1	64	76.606	ENSPTRG00000003846	SF1	91	80.206	Pan_troglodytes
ENSSDUG00000003903	sf1	63	76.402	ENSPANG00000020754	SF1	90	80.206	Papio_anubis
ENSSDUG00000003903	sf1	50	82.493	ENSPKIG00000012116	sf1	79	80.757	Paramormyrops_kingsleyae
ENSSDUG00000003903	sf1	63	76.636	ENSPEMG00000010463	Sf1	66	80.720	Peromyscus_maniculatus_bairdii
ENSSDUG00000003903	sf1	52	69.452	ENSPMAG00000008272	sf1	56	62.712	Petromyzon_marinus
ENSSDUG00000003903	sf1	63	76.869	ENSPCIG00000018173	SF1	61	80.977	Phascolarctos_cinereus
ENSSDUG00000003903	sf1	98	90.312	ENSPFOG00000013683	sf1	67	90.372	Poecilia_formosa
ENSSDUG00000003903	sf1	91	90.067	ENSPLAG00000018076	sf1	62	90.024	Poecilia_latipinna
ENSSDUG00000003903	sf1	98	90.312	ENSPMEG00000005726	sf1	67	90.372	Poecilia_mexicana
ENSSDUG00000003903	sf1	98	89.844	ENSPREG00000004155	sf1	67	89.497	Poecilia_reticulata
ENSSDUG00000003903	sf1	63	76.402	ENSPPYG00000003098	-	71	79.949	Pongo_abelii
ENSSDUG00000003903	sf1	61	76.794	ENSPCAG00000013631	SF1	75	68.085	Procavia_capensis
ENSSDUG00000003903	sf1	63	76.402	ENSPCOG00000027546	SF1	90	80.000	Propithecus_coquereli
ENSSDUG00000003903	sf1	61	77.033	ENSPVAG00000016938	SF1	75	69.548	Pteropus_vampyrus
ENSSDUG00000003903	sf1	70	93.231	ENSPNYG00000004673	sf1	67	91.685	Pundamilia_nyererei
ENSSDUG00000003903	sf1	70	83.261	ENSPNAG00000013072	sf1	67	82.276	Pygocentrus_nattereri
ENSSDUG00000003903	sf1	63	76.402	ENSRBIG00000042818	SF1	91	80.206	Rhinopithecus_bieti
ENSSDUG00000003903	sf1	62	76.850	ENSRROG00000045655	SF1	89	80.739	Rhinopithecus_roxellana
ENSSDUG00000003903	sf1	86	62.604	ENSSBOG00000022267	-	76	72.917	Saimiri_boliviensis_boliviensis
ENSSDUG00000003903	sf1	74	70.445	ENSSHAG00000006841	SF1	70	81.984	Sarcophilus_harrisii
ENSSDUG00000003903	sf1	73	81.328	ENSSFOG00015021978	sf1	66	80.346	Scleropages_formosus
ENSSDUG00000003903	sf1	87	91.237	ENSSMAG00000007549	sf1	70	92.593	Scophthalmus_maximus
ENSSDUG00000003903	sf1	93	99.507	ENSSLDG00000013075	sf1	90	99.507	Seriola_lalandi_dorsalis
ENSSDUG00000003903	sf1	61	72.639	ENSSARG00000008180	SF1	71	76.190	Sorex_araneus
ENSSDUG00000003903	sf1	61	79.767	ENSSPUG00000012907	SF1	58	85.915	Sphenodon_punctatus
ENSSDUG00000003903	sf1	73	96.660	ENSSPAG00000019060	sf1	67	95.842	Stegastes_partitus
ENSSDUG00000003903	sf1	63	76.402	ENSSSCG00000013021	SF1	59	80.720	Sus_scrofa
ENSSDUG00000003903	sf1	76	71.243	ENSTNIG00000004820	sf1	74	74.372	Tetraodon_nigroviridis
ENSSDUG00000003903	sf1	61	72.277	ENSTBEG00000013133	SF1	50	75.532	Tupaia_belangeri
ENSSDUG00000003903	sf1	70	70.259	ENSUMAG00000007268	SF1	72	80.260	Ursus_maritimus
ENSSDUG00000003903	sf1	84	73.050	ENSXETG00000008434	sf1	56	90.244	Xenopus_tropicalis
ENSSDUG00000003903	sf1	55	94.780	ENSXCOG00000003704	sf1	68	93.664	Xiphophorus_couchianus
ENSSDUG00000003903	sf1	98	90.781	ENSXMAG00000007822	sf1	70	90.591	Xiphophorus_maculatus