EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000003925 (Gene tree)
Gene ID: 111223635
Gene Symbol: rbm4.1
Alias: rbm4|wu:fc31f07|wu:fc57h11
Full Name: RNA-binding protein 4.1-like
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 6766 bases
Position: chrBDQW01000111.1:1804823-1811588
Accession: 111223635
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000005297	zf-CCHC	PF00098.23	4.7e-08	1	1
ENSSDUP00000005297	RRM_5	PF13893.6	2.7e-07	1	1
ENSSDUP00000005297	RRM_1	PF00076.22	3.4e-30	1	2
ENSSDUP00000005297	RRM_1	PF00076.22	3.4e-30	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000005398	-	3277	XM_022747875	ENSSDUP00000005297	421 (aa)	XP_022603596	UPI000BBF229F

Gene Model

Click here to download ENSSDUG00000003925's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000003925's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000003925	rbm4.1	64	56.291	ENSSDUG00000018422	rbm4.3	91	55.063
ENSSDUG00000003925	rbm4.1	97	51.074	ENSSDUG00000003936	-	99	48.826
ENSSDUG00000003925	rbm4.1	65	56.667	ENSSDUG00000018435	rbm4.3	86	56.667

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000003925	rbm4.1	100	92.637	ENSAPOG00000012353	rbm4.1	100	92.637	Acanthochromis_polyacanthus
ENSSDUG00000003925	rbm4.1	100	92.874	ENSACIG00000016482	rbm4.1	100	92.874	Amphilophus_citrinellus
ENSSDUG00000003925	rbm4.1	100	94.062	ENSAOCG00000010915	rbm4.1	100	94.062	Amphiprion_ocellaris
ENSSDUG00000003925	rbm4.1	100	94.062	ENSAPEG00000009494	rbm4.1	100	94.062	Amphiprion_percula
ENSSDUG00000003925	rbm4.1	100	94.774	ENSATEG00000001904	rbm4.1	100	94.774	Anabas_testudineus
ENSSDUG00000003925	rbm4.1	99	46.905	ENSACLG00000007740	-	99	43.852	Astatotilapia_calliptera
ENSSDUG00000003925	rbm4.1	100	91.449	ENSACLG00000007722	rbm4.1	100	91.449	Astatotilapia_calliptera
ENSSDUG00000003925	rbm4.1	100	62.972	ENSAMXG00000036611	rbm4.1	100	64.858	Astyanax_mexicanus
ENSSDUG00000003925	rbm4.1	99	49.299	ENSCSEG00000014359	-	94	49.389	Cynoglossus_semilaevis
ENSSDUG00000003925	rbm4.1	100	77.197	ENSCSEG00000014365	rbm4.1	100	77.197	Cynoglossus_semilaevis
ENSSDUG00000003925	rbm4.1	100	80.048	ENSCVAG00000019349	rbm4.1	100	79.669	Cyprinodon_variegatus
ENSSDUG00000003925	rbm4.1	100	70.353	ENSDARG00000036386	rbm4.1	100	69.882	Danio_rerio
ENSSDUG00000003925	rbm4.1	100	50.580	ENSDARG00000055080	rbm4.2	100	51.034	Danio_rerio
ENSSDUG00000003925	rbm4.1	100	68.868	ENSELUG00000013205	rbm4.1	100	68.868	Esox_lucius
ENSSDUG00000003925	rbm4.1	100	79.147	ENSFHEG00000022926	rbm4.1	100	77.725	Fundulus_heteroclitus
ENSSDUG00000003925	rbm4.1	92	51.139	ENSGMOG00000007455	-	92	50.125	Gadus_morhua
ENSSDUG00000003925	rbm4.1	100	69.014	ENSGMOG00000007464	rbm4.1	100	70.755	Gadus_morhua
ENSSDUG00000003925	rbm4.1	100	78.960	ENSGAFG00000019302	rbm4.1	100	77.541	Gambusia_affinis
ENSSDUG00000003925	rbm4.1	97	48.309	ENSGACG00000000821	-	97	47.156	Gasterosteus_aculeatus
ENSSDUG00000003925	rbm4.1	99	92.188	ENSGACG00000000822	rbm4.1	100	92.188	Gasterosteus_aculeatus
ENSSDUG00000003925	rbm4.1	100	91.449	ENSHBUG00000011610	rbm4.1	100	91.449	Haplochromis_burtoni
ENSSDUG00000003925	rbm4.1	96	70.936	ENSHCOG00000011403	rbm4.1	98	72.139	Hippocampus_comes
ENSSDUG00000003925	rbm4.1	100	49.647	ENSIPUG00000022937	rbm4.2	100	49.065	Ictalurus_punctatus
ENSSDUG00000003925	rbm4.1	100	64.155	ENSIPUG00000022931	rbm4.1	100	65.068	Ictalurus_punctatus
ENSSDUG00000003925	rbm4.1	100	78.014	ENSKMAG00000006556	rbm4.1	100	78.014	Kryptolebias_marmoratus
ENSSDUG00000003925	rbm4.1	100	86.936	ENSLBEG00000019782	rbm4.1	100	86.936	Labrus_bergylta
ENSSDUG00000003925	rbm4.1	99	49.180	ENSLBEG00000019756	-	90	60.256	Labrus_bergylta
ENSSDUG00000003925	rbm4.1	98	50.957	ENSMAMG00000001760	-	98	48.140	Mastacembelus_armatus
ENSSDUG00000003925	rbm4.1	100	95.012	ENSMAMG00000001765	rbm4.1	100	95.012	Mastacembelus_armatus
ENSSDUG00000003925	rbm4.1	100	91.449	ENSMZEG00005009205	rbm4.1	100	91.449	Maylandia_zebra
ENSSDUG00000003925	rbm4.1	100	89.598	ENSMMOG00000020479	rbm4.1	100	89.598	Mola_mola
ENSSDUG00000003925	rbm4.1	100	92.162	ENSMALG00000020544	rbm4.1	100	92.162	Monopterus_albus
ENSSDUG00000003925	rbm4.1	98	48.736	ENSMALG00000020557	-	98	48.931	Monopterus_albus
ENSSDUG00000003925	rbm4.1	100	91.686	ENSNBRG00000017755	rbm4.1	100	91.686	Neolamprologus_brichardi
ENSSDUG00000003925	rbm4.1	100	91.924	ENSONIG00000015730	rbm4.1	100	91.924	Oreochromis_niloticus
ENSSDUG00000003925	rbm4.1	100	79.572	ENSORLG00000012496	rbm4.1	100	79.572	Oryzias_latipes
ENSSDUG00000003925	rbm4.1	100	79.572	ENSORLG00020012454	rbm4.1	100	79.572	Oryzias_latipes_hni
ENSSDUG00000003925	rbm4.1	100	79.810	ENSORLG00015013678	rbm4.1	100	79.810	Oryzias_latipes_hsok
ENSSDUG00000003925	rbm4.1	100	80.523	ENSOMEG00000001001	rbm4.1	100	80.523	Oryzias_melastigma
ENSSDUG00000003925	rbm4.1	100	64.252	ENSPKIG00000020805	rbm4.1	85	78.986	Paramormyrops_kingsleyae
ENSSDUG00000003925	rbm4.1	99	45.368	ENSPFOG00000012685	-	99	45.283	Poecilia_formosa
ENSSDUG00000003925	rbm4.1	100	79.196	ENSPFOG00000012675	rbm4.1	100	77.778	Poecilia_formosa
ENSSDUG00000003925	rbm4.1	100	79.196	ENSPLAG00000018572	rbm4.1	100	77.778	Poecilia_latipinna
ENSSDUG00000003925	rbm4.1	100	79.196	ENSPMEG00000006290	rbm4.1	100	77.778	Poecilia_mexicana
ENSSDUG00000003925	rbm4.1	99	45.346	ENSPREG00000003764	-	88	64.171	Poecilia_reticulata
ENSSDUG00000003925	rbm4.1	100	79.196	ENSPREG00000003724	rbm4.1	100	77.778	Poecilia_reticulata
ENSSDUG00000003925	rbm4.1	100	91.449	ENSPNYG00000004662	rbm4.1	100	91.449	Pundamilia_nyererei
ENSSDUG00000003925	rbm4.1	100	51.620	ENSPNAG00000013057	rbm4.2	100	51.157	Pygocentrus_nattereri
ENSSDUG00000003925	rbm4.1	100	68.000	ENSPNAG00000002539	rbm4.1	100	68.618	Pygocentrus_nattereri
ENSSDUG00000003925	rbm4.1	100	64.252	ENSSFOG00015021996	sf1	100	63.551	Scleropages_formosus
ENSSDUG00000003925	rbm4.1	100	87.648	ENSSMAG00000007571	rbm4.1	100	85.036	Scophthalmus_maximus
ENSSDUG00000003925	rbm4.1	97	49.757	ENSSLDG00000013157	-	99	48.724	Seriola_lalandi_dorsalis
ENSSDUG00000003925	rbm4.1	100	100.000	ENSSLDG00000013147	rbm4.1	100	100.000	Seriola_lalandi_dorsalis
ENSSDUG00000003925	rbm4.1	99	47.143	ENSSPAG00000019046	-	99	44.884	Stegastes_partitus
ENSSDUG00000003925	rbm4.1	100	95.972	ENSSPAG00000019053	rbm4.1	100	95.972	Stegastes_partitus
ENSSDUG00000003925	rbm4.1	100	81.473	ENSTRUG00000013334	rbm4.1	100	80.285	Takifugu_rubripes
ENSSDUG00000003925	rbm4.1	99	46.411	ENSTRUG00000013328	-	99	43.908	Takifugu_rubripes
ENSSDUG00000003925	rbm4.1	82	82.096	ENSTNIG00000004821	rbm4.1	97	92.268	Tetraodon_nigroviridis
ENSSDUG00000003925	rbm4.1	100	79.196	ENSXCOG00000003731	rbm4.1	100	77.778	Xiphophorus_couchianus
ENSSDUG00000003925	rbm4.1	100	78.960	ENSXMAG00000008069	rbm4.1	100	77.541	Xiphophorus_maculatus
ENSSDUG00000003925	rbm4.1	99	46.778	ENSXMAG00000008059	-	87	65.775	Xiphophorus_maculatus