EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000003936 (Gene tree)
Gene ID: 111223628
Gene Symbol: -
Alias: rbm4l|wu:fc25a01
Full Name: RNA-binding protein 4.1-like
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 8418 bases
Position: chrBDQW01000111.1:1811890-1820307
Accession: 111223628
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000005304	zf-CCHC	PF00098.23	4.1e-06	1	1
ENSSDUP00000005304	RRM_5	PF13893.6	6.9e-08	1	1
ENSSDUP00000005304	RRM_1	PF00076.22	2.2e-29	1	2
ENSSDUP00000005304	RRM_1	PF00076.22	2.2e-29	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000005405	-	4181	XM_022747860	ENSSDUP00000005304	385 (aa)	XP_022603581	UPI000BBE8D4C

Gene Model

Click here to download ENSSDUG00000003936's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000003936's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000003936	-	99	41.221	ENSSDUG00000018422	rbm4.3	97	38.422
ENSSDUG00000003936	-	99	48.826	ENSSDUG00000003925	rbm4.1	97	51.074

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000003936	-	97	51.190	ENSAPOG00000012353	rbm4.1	95	52.555	Acanthochromis_polyacanthus
ENSSDUG00000003936	-	99	50.117	ENSACIG00000016482	rbm4.1	97	51.675	Amphilophus_citrinellus
ENSSDUG00000003936	-	97	51.429	ENSAOCG00000010915	rbm4.1	95	52.798	Amphiprion_ocellaris
ENSSDUG00000003936	-	97	51.429	ENSAPEG00000009494	rbm4.1	95	52.798	Amphiprion_percula
ENSSDUG00000003936	-	99	49.765	ENSATEG00000001904	rbm4.1	97	52.745	Anabas_testudineus
ENSSDUG00000003936	-	99	49.292	ENSACLG00000007722	rbm4.1	97	51.675	Astatotilapia_calliptera
ENSSDUG00000003936	-	100	78.036	ENSACLG00000007740	-	100	77.261	Astatotilapia_calliptera
ENSSDUG00000003936	-	99	56.331	ENSAMXG00000036611	rbm4.1	94	56.334	Astyanax_mexicanus
ENSSDUG00000003936	-	100	78.866	ENSCSEG00000014359	-	100	78.866	Cynoglossus_semilaevis
ENSSDUG00000003936	-	99	49.289	ENSCSEG00000014365	rbm4.1	99	48.810	Cynoglossus_semilaevis
ENSSDUG00000003936	-	94	50.369	ENSCVAG00000019349	rbm4.1	94	51.889	Cyprinodon_variegatus
ENSSDUG00000003936	-	99	52.983	ENSDARG00000036386	rbm4.1	79	72.464	Danio_rerio
ENSSDUG00000003936	-	99	54.591	ENSDARG00000055080	rbm4.2	99	55.584	Danio_rerio
ENSSDUG00000003936	-	50	57.436	ENSEBUG00000007174	-	97	55.747	Eptatretus_burgeri
ENSSDUG00000003936	-	97	53.589	ENSELUG00000013205	rbm4.1	99	52.620	Esox_lucius
ENSSDUG00000003936	-	94	51.485	ENSFHEG00000022926	rbm4.1	94	50.374	Fundulus_heteroclitus
ENSSDUG00000003936	-	100	72.165	ENSGMOG00000007455	-	100	75.641	Gadus_morhua
ENSSDUG00000003936	-	99	47.529	ENSGMOG00000007464	rbm4.1	95	48.049	Gadus_morhua
ENSSDUG00000003936	-	94	54.386	ENSGAFG00000019302	rbm4.1	94	53.401	Gambusia_affinis
ENSSDUG00000003936	-	100	80.000	ENSGACG00000000821	-	100	80.519	Gasterosteus_aculeatus
ENSSDUG00000003936	-	97	50.000	ENSGACG00000000822	rbm4.1	95	51.459	Gasterosteus_aculeatus
ENSSDUG00000003936	-	99	49.292	ENSHBUG00000011610	rbm4.1	97	51.675	Haplochromis_burtoni
ENSSDUG00000003936	-	92	48.964	ENSHCOG00000011403	rbm4.1	95	47.781	Hippocampus_comes
ENSSDUG00000003936	-	99	51.860	ENSIPUG00000022931	rbm4.1	99	51.288	Ictalurus_punctatus
ENSSDUG00000003936	-	94	56.065	ENSIPUG00000022937	rbm4.2	97	54.242	Ictalurus_punctatus
ENSSDUG00000003936	-	100	61.893	ENSKMAG00000006528	-	100	63.636	Kryptolebias_marmoratus
ENSSDUG00000003936	-	99	50.242	ENSKMAG00000006556	rbm4.1	95	51.256	Kryptolebias_marmoratus
ENSSDUG00000003936	-	100	83.161	ENSLBEG00000019756	-	100	84.197	Labrus_bergylta
ENSSDUG00000003936	-	99	48.174	ENSLBEG00000019782	rbm4.1	99	48.941	Labrus_bergylta
ENSSDUG00000003936	-	99	49.766	ENSMAMG00000001765	rbm4.1	97	51.551	Mastacembelus_armatus
ENSSDUG00000003936	-	100	86.010	ENSMAMG00000001760	-	100	86.010	Mastacembelus_armatus
ENSSDUG00000003936	-	99	49.292	ENSMZEG00005009205	rbm4.1	97	51.675	Maylandia_zebra
ENSSDUG00000003936	-	99	50.000	ENSMMOG00000020479	rbm4.1	97	49.882	Mola_mola
ENSSDUG00000003936	-	100	88.601	ENSMALG00000020557	-	100	88.601	Monopterus_albus
ENSSDUG00000003936	-	99	51.522	ENSMALG00000020544	rbm4.1	97	52.857	Monopterus_albus
ENSSDUG00000003936	-	99	49.292	ENSNBRG00000017755	rbm4.1	97	51.675	Neolamprologus_brichardi
ENSSDUG00000003936	-	99	49.292	ENSONIG00000015730	rbm4.1	97	51.675	Oreochromis_niloticus
ENSSDUG00000003936	-	100	47.166	ENSORLG00000012496	rbm4.1	100	49.289	Oryzias_latipes
ENSSDUG00000003936	-	100	47.166	ENSORLG00020012454	rbm4.1	100	49.289	Oryzias_latipes_hni
ENSSDUG00000003936	-	99	47.032	ENSORLG00015013678	rbm4.1	99	49.165	Oryzias_latipes_hsok
ENSSDUG00000003936	-	99	48.148	ENSOMEG00000001001	rbm4.1	99	48.333	Oryzias_melastigma
ENSSDUG00000003936	-	99	49.315	ENSPKIG00000020805	rbm4.1	85	70.290	Paramormyrops_kingsleyae
ENSSDUG00000003936	-	100	68.101	ENSPFOG00000012685	-	100	67.342	Poecilia_formosa
ENSSDUG00000003936	-	94	54.386	ENSPFOG00000012675	rbm4.1	94	53.401	Poecilia_formosa
ENSSDUG00000003936	-	94	54.386	ENSPLAG00000018572	rbm4.1	94	53.401	Poecilia_latipinna
ENSSDUG00000003936	-	94	54.386	ENSPMEG00000006290	rbm4.1	94	53.401	Poecilia_mexicana
ENSSDUG00000003936	-	94	54.386	ENSPREG00000003724	rbm4.1	94	53.401	Poecilia_reticulata
ENSSDUG00000003936	-	100	64.031	ENSPREG00000003764	-	100	63.520	Poecilia_reticulata
ENSSDUG00000003936	-	99	49.292	ENSPNYG00000004662	rbm4.1	97	51.675	Pundamilia_nyererei
ENSSDUG00000003936	-	99	56.061	ENSPNAG00000013057	rbm4.2	99	55.754	Pygocentrus_nattereri
ENSSDUG00000003936	-	99	54.699	ENSPNAG00000002539	rbm4.1	95	55.025	Pygocentrus_nattereri
ENSSDUG00000003936	-	98	50.350	ENSSFOG00015021996	sf1	98	52.404	Scleropages_formosus
ENSSDUG00000003936	-	99	49.524	ENSSMAG00000007571	rbm4.1	97	49.400	Scophthalmus_maximus
ENSSDUG00000003936	-	100	98.182	ENSSLDG00000013157	-	100	98.182	Seriola_lalandi_dorsalis
ENSSDUG00000003936	-	99	48.826	ENSSLDG00000013147	rbm4.1	97	51.074	Seriola_lalandi_dorsalis
ENSSDUG00000003936	-	99	49.535	ENSSPAG00000019053	rbm4.1	97	51.190	Stegastes_partitus
ENSSDUG00000003936	-	100	82.902	ENSSPAG00000019046	-	100	82.902	Stegastes_partitus
ENSSDUG00000003936	-	99	50.239	ENSTRUG00000013334	rbm4.1	97	49.760	Takifugu_rubripes
ENSSDUG00000003936	-	100	75.130	ENSTRUG00000013328	-	100	75.130	Takifugu_rubripes
ENSSDUG00000003936	-	100	74.611	ENSTNIG00000000316	-	100	74.611	Tetraodon_nigroviridis
ENSSDUG00000003936	-	97	48.421	ENSTNIG00000004821	rbm4.1	94	48.541	Tetraodon_nigroviridis
ENSSDUG00000003936	-	83	45.625	ENSXETG00000026649	rbm4b	93	44.658	Xenopus_tropicalis
ENSSDUG00000003936	-	94	54.386	ENSXCOG00000003731	rbm4.1	94	53.401	Xiphophorus_couchianus
ENSSDUG00000003936	-	100	67.259	ENSXMAG00000008059	-	100	66.497	Xiphophorus_maculatus
ENSSDUG00000003936	-	94	54.386	ENSXMAG00000008069	rbm4.1	94	53.401	Xiphophorus_maculatus