EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000003992 (Gene tree)
Gene ID: 111217935
Gene Symbol: -
Alias: -
Full Name: THO complex subunit 4-like
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 2754 bases
Position: chrBDQW01000050.1:3011794-3014547
Accession: 111217935
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000005414	RRM_1	PF00076.22	1.1e-15	1	1
ENSSDUP00000005410	RRM_1	PF00076.22	1.5e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000005512	-	1176	-	ENSSDUP00000005410	326 (aa)	-	-
ENSSDUT00000005516	-	993	XM_022739983	ENSSDUP00000005414	265 (aa)	XP_022595704	UPI000BBE7633

Gene Model

Click here to download ENSSDUG00000003992's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03013	RNA transport	KEGG
sdu03015	mRNA surveillance pathway	KEGG
sdu03040	Spliceosome	KEGG
sdu05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000003992's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000003992	-	100	54.255	ENSSDUG00000016158	alyref	100	52.465

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000003992	-	100	53.381	ENSG00000183684	ALYREF	97	52.158	Homo_sapiens
ENSSDUG00000003992	-	100	54.610	ENSAPOG00000018455	ALYREF	100	52.817	Acanthochromis_polyacanthus
ENSSDUG00000003992	-	77	58.128	ENSAMEG00000017463	ALYREF	74	59.113	Ailuropoda_melanoleuca
ENSSDUG00000003992	-	76	58.911	ENSACAG00000010526	ALYREF	99	50.000	Anolis_carolinensis
ENSSDUG00000003992	-	76	57.426	ENSANAG00000022638	-	77	57.500	Aotus_nancymaae
ENSSDUG00000003992	-	100	48.148	ENSANAG00000028229	-	78	46.296	Aotus_nancymaae
ENSSDUG00000003992	-	100	53.381	ENSBTAG00000008498	ALYREF	100	52.158	Bos_taurus
ENSSDUG00000003992	-	100	53.025	ENSCJAG00000039942	ALYREF	97	52.158	Callithrix_jacchus
ENSSDUG00000003992	-	100	53.381	ENSCAFG00000005877	ALYREF	100	52.158	Canis_familiaris
ENSSDUG00000003992	-	100	53.381	ENSCAFG00020009815	ALYREF	100	52.158	Canis_lupus_dingo
ENSSDUG00000003992	-	100	52.595	ENSCHIG00000017396	ALYREF	100	51.399	Capra_hircus
ENSSDUG00000003992	-	83	51.598	ENSTSYG00000002272	ALYREF	74	56.716	Carlito_syrichta
ENSSDUG00000003992	-	55	59.864	ENSCAPG00000014727	-	100	57.823	Cavia_aperea
ENSSDUG00000003992	-	100	53.532	ENSCPOG00000013710	ALYREF	100	51.439	Cavia_porcellus
ENSSDUG00000003992	-	100	51.027	ENSCCAG00000020578	-	97	52.158	Cebus_capucinus
ENSSDUG00000003992	-	100	48.315	ENSCCAG00000030237	-	100	48.120	Cebus_capucinus
ENSSDUG00000003992	-	100	53.381	ENSCATG00000033169	ALYREF	97	52.158	Cercocebus_atys
ENSSDUG00000003992	-	100	54.104	ENSCLAG00000015026	ALYREF	100	53.585	Chinchilla_lanigera
ENSSDUG00000003992	-	100	53.381	ENSCSAG00000002216	ALYREF	97	52.158	Chlorocebus_sabaeus
ENSSDUG00000003992	-	92	49.383	ENSCANG00000034056	ALYREF	90	56.853	Colobus_angolensis_palliatus
ENSSDUG00000003992	-	100	52.000	ENSCGRG00001018191	-	100	51.986	Cricetulus_griseus_chok1gshd
ENSSDUG00000003992	-	75	58.000	ENSCGRG00000015871	-	90	56.250	Cricetulus_griseus_crigri
ENSSDUG00000003992	-	64	78.107	ENSCSEG00000015438	-	92	78.107	Cynoglossus_semilaevis
ENSSDUG00000003992	-	75	60.302	ENSDNOG00000002563	ALYREF	75	59.799	Dasypus_novemcinctus
ENSSDUG00000003992	-	75	57.000	ENSDORG00000025849	-	73	60.000	Dipodomys_ordii
ENSSDUG00000003992	-	75	56.784	ENSETEG00000016596	ALYREF	100	57.789	Echinops_telfairi
ENSSDUG00000003992	-	100	53.381	ENSEASG00005005824	ALYREF	95	52.158	Equus_asinus_asinus
ENSSDUG00000003992	-	100	53.381	ENSECAG00000018754	ALYREF	95	52.158	Equus_caballus
ENSSDUG00000003992	-	63	56.983	ENSEEUG00000010164	ALYREF	100	57.542	Erinaceus_europaeus
ENSSDUG00000003992	-	100	53.381	ENSFCAG00000022549	ALYREF	98	52.158	Felis_catus
ENSSDUG00000003992	-	91	48.548	ENSFDAG00000001213	ALYREF	82	58.673	Fukomys_damarensis
ENSSDUG00000003992	-	100	50.890	ENSGALG00000007237	ALYREF	100	50.725	Gallus_gallus
ENSSDUG00000003992	-	100	54.225	ENSGACG00000013328	ALYREF	100	50.883	Gasterosteus_aculeatus
ENSSDUG00000003992	-	100	53.237	ENSGAGG00000008536	ALYREF	100	52.158	Gopherus_agassizii
ENSSDUG00000003992	-	100	53.381	ENSGGOG00000013935	ALYREF	99	51.799	Gorilla_gorilla
ENSSDUG00000003992	-	100	53.791	ENSHGLG00000008293	ALYREF	100	53.069	Heterocephalus_glaber_female
ENSSDUG00000003992	-	76	58.416	ENSHGLG00100006949	ALYREF	77	57.921	Heterocephalus_glaber_male
ENSSDUG00000003992	-	100	55.319	ENSHCOG00000015046	ALYREF	100	53.191	Hippocampus_comes
ENSSDUG00000003992	-	100	51.773	ENSJJAG00000004134	-	100	51.079	Jaculus_jaculus
ENSSDUG00000003992	-	100	53.986	ENSLACG00000005694	ALYREF	100	53.623	Latimeria_chalumnae
ENSSDUG00000003992	-	78	58.937	ENSLAFG00000003083	ALYREF	97	58.824	Loxodonta_africana
ENSSDUG00000003992	-	100	54.982	ENSMFAG00000001394	ALYREF	97	53.506	Macaca_fascicularis
ENSSDUG00000003992	-	100	53.381	ENSMMUG00000012884	ALYREF	97	52.158	Macaca_mulatta
ENSSDUG00000003992	-	100	53.381	ENSMNEG00000043666	ALYREF	97	52.158	Macaca_nemestrina
ENSSDUG00000003992	-	74	56.410	ENSMLEG00000043353	ALYREF	94	51.556	Mandrillus_leucophaeus
ENSSDUG00000003992	-	100	52.632	ENSMAUG00000020552	-	100	52.075	Mesocricetus_auratus
ENSSDUG00000003992	-	100	50.538	ENSMICG00000017403	ALYREF	97	51.799	Microcebus_murinus
ENSSDUG00000003992	-	100	52.830	ENSMOCG00000016792	-	100	51.321	Microtus_ochrogaster
ENSSDUG00000003992	-	98	52.708	ENSMODG00000003030	ALYREF	84	50.719	Monodelphis_domestica
ENSSDUG00000003992	-	100	54.064	ENSMALG00000019408	ALYREF	100	53.546	Monopterus_albus
ENSSDUG00000003992	-	98	50.575	MGP_CAROLIEiJ_G0014874	Alyref2	100	50.566	Mus_caroli
ENSSDUG00000003992	-	100	53.069	MGP_CAROLIEiJ_G0017529	Alyref	100	52.708	Mus_caroli
ENSSDUG00000003992	-	75	52.525	ENSMUSG00000094314	Gm4301	62	51.515	Mus_musculus
ENSSDUG00000003992	-	100	44.147	ENSMUSG00000090854	Gm4340	100	42.807	Mus_musculus
ENSSDUG00000003992	-	100	44.746	ENSMUSG00000097878	Gm8764	98	52.174	Mus_musculus
ENSSDUG00000003992	-	100	44.746	ENSMUSG00000097550	Gm21304	100	44.128	Mus_musculus
ENSSDUG00000003992	-	75	53.535	ENSMUSG00000112931	Gm4303	62	52.020	Mus_musculus
ENSSDUG00000003992	-	100	44.746	ENSMUSG00000097427	Gm6763	98	52.174	Mus_musculus
ENSSDUG00000003992	-	75	53.535	ENSMUSG00000091101	Gm4302	61	52.020	Mus_musculus
ENSSDUG00000003992	-	100	44.746	ENSMUSG00000094144	Gm21312	100	44.128	Mus_musculus
ENSSDUG00000003992	-	100	47.566	ENSMUSG00000086727	4931428L18Rik	100	46.038	Mus_musculus
ENSSDUG00000003992	-	75	52.525	ENSMUSG00000096640	Gm4312	62	51.515	Mus_musculus
ENSSDUG00000003992	-	98	50.965	ENSMUSG00000060244	Alyref2	100	51.321	Mus_musculus
ENSSDUG00000003992	-	100	44.746	ENSMUSG00000095022	Gm20765	100	44.128	Mus_musculus
ENSSDUG00000003992	-	100	44.746	ENSMUSG00000091779	Gm21293	100	44.128	Mus_musculus
ENSSDUG00000003992	-	100	53.069	ENSMUSG00000025134	Alyref	100	52.708	Mus_musculus
ENSSDUG00000003992	-	100	47.547	ENSMUSG00000117091	AC153137.1	100	46.038	Mus_musculus
ENSSDUG00000003992	-	75	53.535	ENSMUSG00000096744	Gm4307	62	52.020	Mus_musculus
ENSSDUG00000003992	-	75	53.535	ENSMUSG00000112856	Gm4305	62	52.020	Mus_musculus
ENSSDUG00000003992	-	100	53.069	MGP_PahariEiJ_G0018655	-	100	52.708	Mus_pahari
ENSSDUG00000003992	-	69	56.923	MGP_PahariEiJ_G0018656	-	98	58.031	Mus_pahari
ENSSDUG00000003992	-	75	50.505	MGP_PahariEiJ_G0027254	-	82	50.000	Mus_pahari
ENSSDUG00000003992	-	75	50.505	MGP_PahariEiJ_G0027255	-	80	50.000	Mus_pahari
ENSSDUG00000003992	-	98	51.341	MGP_SPRETEiJ_G0015679	Alyref2	100	51.698	Mus_spretus
ENSSDUG00000003992	-	100	53.069	MGP_SPRETEiJ_G0018373	Alyref	100	52.708	Mus_spretus
ENSSDUG00000003992	-	97	44.402	ENSMLUG00000022869	-	64	47.208	Myotis_lucifugus
ENSSDUG00000003992	-	74	45.128	ENSMLUG00000028343	-	85	45.128	Myotis_lucifugus
ENSSDUG00000003992	-	97	46.360	ENSMLUG00000024471	-	82	43.243	Myotis_lucifugus
ENSSDUG00000003992	-	100	45.230	ENSMLUG00000023213	-	100	42.960	Myotis_lucifugus
ENSSDUG00000003992	-	97	45.725	ENSMLUG00000024447	-	60	49.239	Myotis_lucifugus
ENSSDUG00000003992	-	97	45.977	ENSMLUG00000015043	-	98	42.471	Myotis_lucifugus
ENSSDUG00000003992	-	75	57.286	ENSMLUG00000009555	-	66	57.286	Myotis_lucifugus
ENSSDUG00000003992	-	97	46.899	ENSMLUG00000025677	-	77	42.322	Myotis_lucifugus
ENSSDUG00000003992	-	97	47.876	ENSMLUG00000024976	-	61	50.254	Myotis_lucifugus
ENSSDUG00000003992	-	97	46.442	ENSMLUG00000026271	-	61	51.020	Myotis_lucifugus
ENSSDUG00000003992	-	97	45.736	ENSMLUG00000030407	-	77	41.199	Myotis_lucifugus
ENSSDUG00000003992	-	97	46.667	ENSMLUG00000002626	-	98	46.125	Myotis_lucifugus
ENSSDUG00000003992	-	97	48.837	ENSMLUG00000027516	-	80	47.710	Myotis_lucifugus
ENSSDUG00000003992	-	97	44.402	ENSMLUG00000027352	-	77	44.186	Myotis_lucifugus
ENSSDUG00000003992	-	100	53.381	ENSNLEG00000010313	ALYREF	97	52.158	Nomascus_leucogenys
ENSSDUG00000003992	-	55	61.905	ENSMEUG00000002210	ALYREF	59	59.864	Notamacropus_eugenii
ENSSDUG00000003992	-	55	55.782	ENSOPRG00000005551	-	52	58.503	Ochotona_princeps
ENSSDUG00000003992	-	100	52.817	ENSODEG00000008359	ALYREF	100	51.601	Octodon_degus
ENSSDUG00000003992	-	100	54.737	ENSORLG00000012331	ALYREF	100	52.265	Oryzias_latipes
ENSSDUG00000003992	-	93	52.632	ENSOGAG00000012409	ALYREF	76	58.209	Otolemur_garnettii
ENSSDUG00000003992	-	75	59.799	ENSOARG00000017932	ALYREF	67	59.296	Ovis_aries
ENSSDUG00000003992	-	100	53.381	ENSPPRG00000010829	ALYREF	98	52.158	Panthera_pardus
ENSSDUG00000003992	-	50	64.662	ENSPTIG00000006399	ALYREF	70	66.917	Panthera_tigris_altaica
ENSSDUG00000003992	-	100	53.381	ENSPTRG00000009774	ALYREF	97	52.158	Pan_troglodytes
ENSSDUG00000003992	-	100	53.381	ENSPANG00000019265	ALYREF	97	52.158	Papio_anubis
ENSSDUG00000003992	-	54	60.140	ENSPSIG00000017541	ALYREF	99	59.028	Pelodiscus_sinensis
ENSSDUG00000003992	-	100	53.381	ENSPPYG00000008749	ALYREF	97	52.158	Pongo_abelii
ENSSDUG00000003992	-	100	50.538	ENSPCOG00000020874	ALYREF	97	51.799	Propithecus_coquereli
ENSSDUG00000003992	-	100	48.736	ENSPVAG00000017866	ALYREF	69	58.291	Pteropus_vampyrus
ENSSDUG00000003992	-	63	56.906	ENSRNOG00000036687	Alyref	91	56.667	Rattus_norvegicus
ENSSDUG00000003992	-	74	58.673	ENSRBIG00000039651	ALYREF	72	58.163	Rhinopithecus_bieti
ENSSDUG00000003992	-	77	58.824	ENSRROG00000045364	ALYREF	75	57.426	Rhinopithecus_roxellana
ENSSDUG00000003992	-	75	59.500	ENSSHAG00000010459	ALYREF	93	59.000	Sarcophilus_harrisii
ENSSDUG00000003992	-	100	97.736	ENSSLDG00000005386	-	100	97.736	Seriola_lalandi_dorsalis
ENSSDUG00000003992	-	100	52.688	ENSSPUG00000004600	ALYREF	100	52.688	Sphenodon_punctatus
ENSSDUG00000003992	-	98	51.264	ENSSPAG00000011178	ALYREF	98	50.699	Stegastes_partitus
ENSSDUG00000003992	-	100	53.430	ENSSSCG00000032655	ALYREF	100	53.069	Sus_scrofa
ENSSDUG00000003992	-	54	56.643	ENSTGUG00000003513	ALYREF	99	56.552	Taeniopygia_guttata
ENSSDUG00000003992	-	100	51.020	ENSTRUG00000008828	ALYREF	100	53.214	Takifugu_rubripes
ENSSDUG00000003992	-	75	59.799	ENSTBEG00000005834	ALYREF	100	59.296	Tupaia_belangeri
ENSSDUG00000003992	-	100	52.669	ENSTTRG00000012275	ALYREF	100	51.439	Tursiops_truncatus
ENSSDUG00000003992	-	100	54.511	ENSXETG00000005391	alyref	100	53.759	Xenopus_tropicalis