EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000004033 (Gene tree)
Gene ID: 111227912
Gene Symbol: rbm42
Alias: mgc10433l|zgc:109907
Full Name: RNA binding motif protein 42
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 7864 bases
Position: chrBDQW01000191.1:107707-115570
Accession: 111227912
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000005459	RRM_1	PF00076.22	8.5e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000005564	-	2021	XM_022753660	ENSSDUP00000005459	406 (aa)	XP_022609381	UPI000BBE6FAF

Gene Model

Click here to download ENSSDUG00000004033's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000004033's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000004033	rbm42	100	89.901	ENSAPOG00000015109	rbm42	100	89.901	Acanthochromis_polyacanthus
ENSSDUG00000004033	rbm42	100	83.990	ENSACIG00000010771	rbm42	100	83.990	Amphilophus_citrinellus
ENSSDUG00000004033	rbm42	100	89.901	ENSAOCG00000008873	rbm42	100	89.901	Amphiprion_ocellaris
ENSSDUG00000004033	rbm42	100	89.901	ENSAPEG00000012051	rbm42	99	89.901	Amphiprion_percula
ENSSDUG00000004033	rbm42	100	88.424	ENSATEG00000000536	rbm42	100	88.424	Anabas_testudineus
ENSSDUG00000004033	rbm42	100	88.916	ENSACLG00000004988	rbm42	100	88.916	Astatotilapia_calliptera
ENSSDUG00000004033	rbm42	100	75.721	ENSAMXG00000016545	rbm42	100	74.519	Astyanax_mexicanus
ENSSDUG00000004033	rbm42	97	84.383	ENSCSEG00000010248	rbm42	100	85.390	Cynoglossus_semilaevis
ENSSDUG00000004033	rbm42	100	81.463	ENSCVAG00000015589	rbm42	100	80.732	Cyprinodon_variegatus
ENSSDUG00000004033	rbm42	100	70.531	ENSDARG00000039910	rbm42	100	71.429	Danio_rerio
ENSSDUG00000004033	rbm42	100	72.577	ENSELUG00000022403	rbm42	100	72.512	Esox_lucius
ENSSDUG00000004033	rbm42	72	78.261	ENSFHEG00000006764	rbm42	91	79.121	Fundulus_heteroclitus
ENSSDUG00000004033	rbm42	100	75.728	ENSGMOG00000012660	rbm42	100	73.966	Gadus_morhua
ENSSDUG00000004033	rbm42	76	77.564	ENSGAFG00000009059	rbm42	99	78.344	Gambusia_affinis
ENSSDUG00000004033	rbm42	100	85.222	ENSGACG00000004170	rbm42	100	84.729	Gasterosteus_aculeatus
ENSSDUG00000004033	rbm42	100	88.670	ENSHBUG00000011141	rbm42	100	88.670	Haplochromis_burtoni
ENSSDUG00000004033	rbm42	100	79.657	ENSHCOG00000021214	rbm42	100	79.412	Hippocampus_comes
ENSSDUG00000004033	rbm42	100	75.355	ENSIPUG00000022365	rbm42	99	73.872	Ictalurus_punctatus
ENSSDUG00000004033	rbm42	91	78.706	ENSKMAG00000015287	rbm42	99	79.784	Kryptolebias_marmoratus
ENSSDUG00000004033	rbm42	84	85.838	ENSLBEG00000004578	-	96	86.416	Labrus_bergylta
ENSSDUG00000004033	rbm42	100	85.086	ENSLBEG00000017547	rbm42	100	85.575	Labrus_bergylta
ENSSDUG00000004033	rbm42	100	68.085	ENSLOCG00000003368	rbm42	100	69.031	Lepisosteus_oculatus
ENSSDUG00000004033	rbm42	100	90.394	ENSMAMG00000006708	rbm42	100	90.394	Mastacembelus_armatus
ENSSDUG00000004033	rbm42	100	88.916	ENSMZEG00005025234	rbm42	100	88.916	Maylandia_zebra
ENSSDUG00000004033	rbm42	91	90.515	ENSMALG00000015720	rbm42	100	90.515	Monopterus_albus
ENSSDUG00000004033	rbm42	100	88.264	ENSONIG00000008029	rbm42	100	88.264	Oreochromis_niloticus
ENSSDUG00000004033	rbm42	100	64.762	ENSORLG00020022507	rbm42	100	61.521	Oryzias_latipes_hni
ENSSDUG00000004033	rbm42	100	83.990	ENSORLG00015000659	rbm42	100	84.236	Oryzias_latipes_hsok
ENSSDUG00000004033	rbm42	59	86.667	ENSOMEG00000014332	rbm42	97	81.853	Oryzias_melastigma
ENSSDUG00000004033	rbm42	100	74.580	ENSPKIG00000015165	rbm42	100	73.012	Paramormyrops_kingsleyae
ENSSDUG00000004033	rbm42	93	65.441	ENSPMGG00000003569	rbm42	100	97.143	Periophthalmus_magnuspinnatus
ENSSDUG00000004033	rbm42	53	53.247	ENSPMAG00000008633	rbm42	100	49.733	Petromyzon_marinus
ENSSDUG00000004033	rbm42	100	79.462	ENSPFOG00000007701	rbm42	100	81.174	Poecilia_formosa
ENSSDUG00000004033	rbm42	100	79.462	ENSPLAG00000009405	rbm42	100	80.929	Poecilia_latipinna
ENSSDUG00000004033	rbm42	100	79.707	ENSPMEG00000010375	rbm42	100	81.418	Poecilia_mexicana
ENSSDUG00000004033	rbm42	100	79.707	ENSPREG00000018102	rbm42	100	81.418	Poecilia_reticulata
ENSSDUG00000004033	rbm42	100	88.670	ENSPNYG00000014460	rbm42	100	88.670	Pundamilia_nyererei
ENSSDUG00000004033	rbm42	100	75.943	ENSPNAG00000009961	rbm42	100	74.528	Pygocentrus_nattereri
ENSSDUG00000004033	rbm42	100	70.439	ENSSFOG00015019227	rbm42	100	70.726	Scleropages_formosus
ENSSDUG00000004033	rbm42	100	90.418	ENSSMAG00000011935	rbm42	100	90.418	Scophthalmus_maximus
ENSSDUG00000004033	rbm42	100	87.931	ENSSLDG00000009918	rbm42	100	100.000	Seriola_lalandi_dorsalis
ENSSDUG00000004033	rbm42	100	90.887	ENSSPAG00000019871	rbm42	100	90.887	Stegastes_partitus
ENSSDUG00000004033	rbm42	100	81.034	ENSTRUG00000024586	-	76	80.049	Takifugu_rubripes
ENSSDUG00000004033	rbm42	99	68.636	ENSTNIG00000011669	rbm42	100	67.347	Tetraodon_nigroviridis
ENSSDUG00000004033	rbm42	100	57.907	ENSXETG00000017599	rbm42	100	59.670	Xenopus_tropicalis
ENSSDUG00000004033	rbm42	100	79.951	ENSXMAG00000012827	rbm42	100	81.663	Xiphophorus_maculatus