EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000004084 (Gene tree)
Gene ID: 111237564
Gene Symbol: cpsf2
Alias: zgc:92484
Full Name: cleavage and polyadenylation specific factor 2
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 11369 bases
Position: chrBDQW01000025.1:17136859-17148227
Accession: 111237564
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000005568	Beta-Casp	PF10996.8	6.1e-21	1	1
ENSSDUP00000005568	Lactamase_B	PF00753.27	4.5e-05	1	1
ENSSDUP00000005568	RMMBL	PF07521.12	1.5e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000005676	-	5335	XM_022766705	ENSSDUP00000005568	787 (aa)	XP_022622426	UPI000BBE6181

Gene Model

Click here to download ENSSDUG00000004084's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000004084's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000004084	cpsf2	100	86.185	ENSG00000165934	CPSF2	100	87.500	Homo_sapiens
ENSSDUG00000004084	cpsf2	100	97.078	ENSAPOG00000001242	cpsf2	100	97.078	Acanthochromis_polyacanthus
ENSSDUG00000004084	cpsf2	100	96.701	ENSACIG00000009331	cpsf2	100	96.701	Amphilophus_citrinellus
ENSSDUG00000004084	cpsf2	100	97.332	ENSAOCG00000014095	cpsf2	100	97.332	Amphiprion_ocellaris
ENSSDUG00000004084	cpsf2	100	97.332	ENSAPEG00000009158	cpsf2	100	97.332	Amphiprion_percula
ENSSDUG00000004084	cpsf2	96	96.966	ENSATEG00000017644	cpsf2	99	96.812	Anabas_testudineus
ENSSDUG00000004084	cpsf2	100	85.823	ENSAPLG00000006330	CPSF2	100	85.823	Anas_platyrhynchos
ENSSDUG00000004084	cpsf2	100	85.298	ENSACAG00000009245	CPSF2	100	85.298	Anolis_carolinensis
ENSSDUG00000004084	cpsf2	100	86.312	ENSANAG00000022915	CPSF2	100	86.312	Aotus_nancymaae
ENSSDUG00000004084	cpsf2	100	90.494	ENSAMXG00000018696	cpsf2	100	90.494	Astyanax_mexicanus
ENSSDUG00000004084	cpsf2	100	86.312	ENSBTAG00000010227	CPSF2	100	86.312	Bos_taurus
ENSSDUG00000004084	cpsf2	100	41.970	WBGene00017313	cpsf-2	100	42.019	Caenorhabditis_elegans
ENSSDUG00000004084	cpsf2	100	86.312	ENSCJAG00000018069	CPSF2	100	86.312	Callithrix_jacchus
ENSSDUG00000004084	cpsf2	100	86.312	ENSCAFG00000010909	CPSF2	100	86.312	Canis_familiaris
ENSSDUG00000004084	cpsf2	100	86.312	ENSCAFG00020020670	CPSF2	100	86.312	Canis_lupus_dingo
ENSSDUG00000004084	cpsf2	100	86.312	ENSCHIG00000023848	CPSF2	100	86.312	Capra_hircus
ENSSDUG00000004084	cpsf2	100	86.185	ENSTSYG00000009036	CPSF2	100	86.185	Carlito_syrichta
ENSSDUG00000004084	cpsf2	100	86.312	ENSCPOG00000010899	CPSF2	100	86.312	Cavia_porcellus
ENSSDUG00000004084	cpsf2	100	86.312	ENSCCAG00000028088	CPSF2	100	86.312	Cebus_capucinus
ENSSDUG00000004084	cpsf2	100	86.312	ENSCATG00000030132	CPSF2	100	86.312	Cercocebus_atys
ENSSDUG00000004084	cpsf2	100	86.312	ENSCLAG00000012404	CPSF2	100	86.312	Chinchilla_lanigera
ENSSDUG00000004084	cpsf2	100	86.312	ENSCSAG00000011300	CPSF2	100	86.312	Chlorocebus_sabaeus
ENSSDUG00000004084	cpsf2	100	80.735	ENSCHOG00000012904	CPSF2	100	80.735	Choloepus_hoffmanni
ENSSDUG00000004084	cpsf2	100	86.058	ENSCPBG00000008766	CPSF2	97	86.058	Chrysemys_picta_bellii
ENSSDUG00000004084	cpsf2	100	53.043	ENSCING00000007881	-	100	52.547	Ciona_intestinalis
ENSSDUG00000004084	cpsf2	94	86.351	ENSCANG00000041651	CPSF2	100	86.333	Colobus_angolensis_palliatus
ENSSDUG00000004084	cpsf2	100	85.805	ENSCGRG00001006901	Cpsf2	100	85.805	Cricetulus_griseus_chok1gshd
ENSSDUG00000004084	cpsf2	100	85.805	ENSCGRG00000012416	Cpsf2	100	85.805	Cricetulus_griseus_crigri
ENSSDUG00000004084	cpsf2	100	94.797	ENSCSEG00000004116	cpsf2	100	94.797	Cynoglossus_semilaevis
ENSSDUG00000004084	cpsf2	100	95.172	ENSCVAG00000000095	cpsf2	100	95.172	Cyprinodon_variegatus
ENSSDUG00000004084	cpsf2	100	88.734	ENSDARG00000028971	cpsf2	100	88.734	Danio_rerio
ENSSDUG00000004084	cpsf2	100	86.312	ENSDNOG00000042757	CPSF2	100	86.312	Dasypus_novemcinctus
ENSSDUG00000004084	cpsf2	100	86.312	ENSDORG00000013709	Cpsf2	100	86.312	Dipodomys_ordii
ENSSDUG00000004084	cpsf2	100	53.399	FBgn0027873	Cpsf100	100	52.912	Drosophila_melanogaster
ENSSDUG00000004084	cpsf2	100	78.734	ENSETEG00000012123	CPSF2	100	78.734	Echinops_telfairi
ENSSDUG00000004084	cpsf2	52	76.039	ENSEBUG00000012098	cpsf2	93	76.039	Eptatretus_burgeri
ENSSDUG00000004084	cpsf2	89	91.126	ENSEASG00005021193	CPSF2	100	91.126	Equus_asinus_asinus
ENSSDUG00000004084	cpsf2	100	86.185	ENSECAG00000023935	CPSF2	100	86.185	Equus_caballus
ENSSDUG00000004084	cpsf2	100	90.100	ENSELUG00000008442	cpsf2	100	90.100	Esox_lucius
ENSSDUG00000004084	cpsf2	100	86.185	ENSFCAG00000007886	CPSF2	100	86.185	Felis_catus
ENSSDUG00000004084	cpsf2	100	86.041	ENSFALG00000002412	CPSF2	100	86.041	Ficedula_albicollis
ENSSDUG00000004084	cpsf2	100	86.185	ENSFDAG00000006327	CPSF2	100	86.185	Fukomys_damarensis
ENSSDUG00000004084	cpsf2	96	92.801	ENSFHEG00000015465	cpsf2	98	93.840	Fundulus_heteroclitus
ENSSDUG00000004084	cpsf2	100	90.278	ENSGMOG00000008761	cpsf2	100	90.278	Gadus_morhua
ENSSDUG00000004084	cpsf2	100	86.421	ENSGALG00000010783	CPSF2	100	86.421	Gallus_gallus
ENSSDUG00000004084	cpsf2	100	95.553	ENSGAFG00000001407	cpsf2	100	95.553	Gambusia_affinis
ENSSDUG00000004084	cpsf2	100	96.061	ENSGACG00000008418	cpsf2	100	96.061	Gasterosteus_aculeatus
ENSSDUG00000004084	cpsf2	100	85.932	ENSGAGG00000008287	CPSF2	100	85.932	Gopherus_agassizii
ENSSDUG00000004084	cpsf2	100	86.185	ENSGGOG00000011799	CPSF2	100	86.185	Gorilla_gorilla
ENSSDUG00000004084	cpsf2	100	95.299	ENSHBUG00000023466	cpsf2	100	95.299	Haplochromis_burtoni
ENSSDUG00000004084	cpsf2	100	86.312	ENSHGLG00000018311	CPSF2	100	86.312	Heterocephalus_glaber_female
ENSSDUG00000004084	cpsf2	100	86.312	ENSHGLG00100016460	CPSF2	100	86.312	Heterocephalus_glaber_male
ENSSDUG00000004084	cpsf2	100	93.901	ENSHCOG00000019527	cpsf2	98	93.901	Hippocampus_comes
ENSSDUG00000004084	cpsf2	100	91.255	ENSIPUG00000020857	cpsf2	100	91.255	Ictalurus_punctatus
ENSSDUG00000004084	cpsf2	100	86.312	ENSSTOG00000009528	CPSF2	100	86.312	Ictidomys_tridecemlineatus
ENSSDUG00000004084	cpsf2	100	86.058	ENSJJAG00000017925	Cpsf2	100	86.058	Jaculus_jaculus
ENSSDUG00000004084	cpsf2	100	94.536	ENSKMAG00000019429	cpsf2	100	94.536	Kryptolebias_marmoratus
ENSSDUG00000004084	cpsf2	95	95.845	ENSLBEG00000011585	cpsf2	100	95.845	Labrus_bergylta
ENSSDUG00000004084	cpsf2	100	84.645	ENSLACG00000019024	CPSF2	100	84.918	Latimeria_chalumnae
ENSSDUG00000004084	cpsf2	100	89.241	ENSLOCG00000014102	cpsf2	100	89.241	Lepisosteus_oculatus
ENSSDUG00000004084	cpsf2	100	85.967	ENSLAFG00000004891	CPSF2	100	85.967	Loxodonta_africana
ENSSDUG00000004084	cpsf2	100	86.312	ENSMFAG00000041212	CPSF2	100	86.312	Macaca_fascicularis
ENSSDUG00000004084	cpsf2	100	86.312	ENSMMUG00000000699	CPSF2	100	86.312	Macaca_mulatta
ENSSDUG00000004084	cpsf2	100	86.312	ENSMNEG00000031584	CPSF2	100	86.312	Macaca_nemestrina
ENSSDUG00000004084	cpsf2	100	86.312	ENSMLEG00000029394	CPSF2	100	86.312	Mandrillus_leucophaeus
ENSSDUG00000004084	cpsf2	100	97.840	ENSMAMG00000004235	cpsf2	100	97.840	Mastacembelus_armatus
ENSSDUG00000004084	cpsf2	100	95.426	ENSMZEG00005001769	cpsf2	100	95.426	Maylandia_zebra
ENSSDUG00000004084	cpsf2	100	86.185	ENSMGAG00000013122	CPSF2	100	86.185	Meleagris_gallopavo
ENSSDUG00000004084	cpsf2	100	85.805	ENSMAUG00000015160	Cpsf2	100	85.805	Mesocricetus_auratus
ENSSDUG00000004084	cpsf2	100	86.312	ENSMICG00000016441	CPSF2	100	86.312	Microcebus_murinus
ENSSDUG00000004084	cpsf2	100	85.805	ENSMOCG00000015372	Cpsf2	100	85.805	Microtus_ochrogaster
ENSSDUG00000004084	cpsf2	100	90.724	ENSMMOG00000015590	cpsf2	100	90.724	Mola_mola
ENSSDUG00000004084	cpsf2	100	86.312	ENSMODG00000002042	CPSF2	100	86.312	Monodelphis_domestica
ENSSDUG00000004084	cpsf2	100	93.774	ENSMALG00000022275	cpsf2	100	93.774	Monopterus_albus
ENSSDUG00000004084	cpsf2	100	85.805	ENSMUSG00000041781	Cpsf2	100	85.805	Mus_musculus
ENSSDUG00000004084	cpsf2	100	85.678	MGP_PahariEiJ_G0029791	Cpsf2	100	85.678	Mus_pahari
ENSSDUG00000004084	cpsf2	100	85.805	MGP_SPRETEiJ_G0018877	Cpsf2	100	85.805	Mus_spretus
ENSSDUG00000004084	cpsf2	100	86.185	ENSMPUG00000007617	CPSF2	98	86.185	Mustela_putorius_furo
ENSSDUG00000004084	cpsf2	100	85.932	ENSMLUG00000005570	CPSF2	100	85.932	Myotis_lucifugus
ENSSDUG00000004084	cpsf2	100	86.058	ENSNGAG00000020312	Cpsf2	100	86.058	Nannospalax_galili
ENSSDUG00000004084	cpsf2	100	95.807	ENSNBRG00000022402	cpsf2	100	95.807	Neolamprologus_brichardi
ENSSDUG00000004084	cpsf2	100	85.425	ENSNLEG00000017132	CPSF2	100	85.425	Nomascus_leucogenys
ENSSDUG00000004084	cpsf2	91	93.851	ENSMEUG00000008138	CPSF2	91	93.851	Notamacropus_eugenii
ENSSDUG00000004084	cpsf2	94	82.114	ENSOPRG00000008484	-	100	82.114	Ochotona_princeps
ENSSDUG00000004084	cpsf2	100	86.058	ENSODEG00000008682	CPSF2	100	86.058	Octodon_degus
ENSSDUG00000004084	cpsf2	100	95.807	ENSONIG00000005901	cpsf2	100	95.807	Oreochromis_niloticus
ENSSDUG00000004084	cpsf2	100	86.312	ENSOANG00000003822	CPSF2	100	86.312	Ornithorhynchus_anatinus
ENSSDUG00000004084	cpsf2	100	86.185	ENSOCUG00000005713	CPSF2	100	86.185	Oryctolagus_cuniculus
ENSSDUG00000004084	cpsf2	100	88.691	ENSORLG00000011628	cpsf2	100	88.691	Oryzias_latipes
ENSSDUG00000004084	cpsf2	100	94.536	ENSORLG00020016980	cpsf2	100	94.536	Oryzias_latipes_hni
ENSSDUG00000004084	cpsf2	100	94.536	ENSORLG00015011910	cpsf2	100	94.536	Oryzias_latipes_hsok
ENSSDUG00000004084	cpsf2	100	94.289	ENSOMEG00000022876	cpsf2	100	94.289	Oryzias_melastigma
ENSSDUG00000004084	cpsf2	100	83.312	ENSOARG00000012889	CPSF2	100	83.312	Ovis_aries
ENSSDUG00000004084	cpsf2	100	86.185	ENSPPAG00000039666	CPSF2	100	86.185	Pan_paniscus
ENSSDUG00000004084	cpsf2	99	86.168	ENSPPRG00000010869	CPSF2	100	86.168	Panthera_pardus
ENSSDUG00000004084	cpsf2	100	86.185	ENSPTIG00000021202	CPSF2	100	86.185	Panthera_tigris_altaica
ENSSDUG00000004084	cpsf2	100	86.185	ENSPTRG00000006651	CPSF2	100	86.185	Pan_troglodytes
ENSSDUG00000004084	cpsf2	100	86.312	ENSPANG00000017417	CPSF2	100	86.312	Papio_anubis
ENSSDUG00000004084	cpsf2	100	85.171	ENSPKIG00000021453	cpsf2	100	85.171	Paramormyrops_kingsleyae
ENSSDUG00000004084	cpsf2	100	85.551	ENSPSIG00000006289	CPSF2	100	85.551	Pelodiscus_sinensis
ENSSDUG00000004084	cpsf2	76	90.000	ENSPMGG00000002511	cpsf2	99	90.000	Periophthalmus_magnuspinnatus
ENSSDUG00000004084	cpsf2	100	85.932	ENSPEMG00000007917	Cpsf2	100	85.932	Peromyscus_maniculatus_bairdii
ENSSDUG00000004084	cpsf2	100	73.275	ENSPMAG00000006205	cpsf2	100	73.275	Petromyzon_marinus
ENSSDUG00000004084	cpsf2	100	86.312	ENSPCIG00000011393	CPSF2	100	86.312	Phascolarctos_cinereus
ENSSDUG00000004084	cpsf2	100	95.553	ENSPFOG00000018648	cpsf2	100	95.553	Poecilia_formosa
ENSSDUG00000004084	cpsf2	100	95.553	ENSPLAG00000019199	cpsf2	99	95.553	Poecilia_latipinna
ENSSDUG00000004084	cpsf2	96	95.641	ENSPMEG00000012100	cpsf2	100	95.308	Poecilia_mexicana
ENSSDUG00000004084	cpsf2	100	95.172	ENSPREG00000008960	cpsf2	100	95.172	Poecilia_reticulata
ENSSDUG00000004084	cpsf2	64	82.107	ENSPPYG00000029685	-	100	82.107	Pongo_abelii
ENSSDUG00000004084	cpsf2	100	86.185	ENSPCAG00000012477	CPSF2	100	86.185	Procavia_capensis
ENSSDUG00000004084	cpsf2	100	86.312	ENSPCOG00000026387	CPSF2	100	86.312	Propithecus_coquereli
ENSSDUG00000004084	cpsf2	64	91.327	ENSPVAG00000004223	CPSF2	65	91.327	Pteropus_vampyrus
ENSSDUG00000004084	cpsf2	100	95.178	ENSPNYG00000023356	cpsf2	100	95.178	Pundamilia_nyererei
ENSSDUG00000004084	cpsf2	100	92.015	ENSPNAG00000001849	cpsf2	100	92.015	Pygocentrus_nattereri
ENSSDUG00000004084	cpsf2	100	85.805	ENSRNOG00000005733	Cpsf2	100	85.805	Rattus_norvegicus
ENSSDUG00000004084	cpsf2	100	86.312	ENSRBIG00000044792	CPSF2	100	86.312	Rhinopithecus_bieti
ENSSDUG00000004084	cpsf2	100	86.312	ENSRROG00000034875	CPSF2	100	86.312	Rhinopithecus_roxellana
ENSSDUG00000004084	cpsf2	100	86.312	ENSSBOG00000024571	CPSF2	100	86.312	Saimiri_boliviensis_boliviensis
ENSSDUG00000004084	cpsf2	100	86.312	ENSSHAG00000010458	CPSF2	100	86.312	Sarcophilus_harrisii
ENSSDUG00000004084	cpsf2	100	92.142	ENSSFOG00015002117	cpsf2	100	92.269	Scleropages_formosus
ENSSDUG00000004084	cpsf2	100	95.305	ENSSMAG00000002001	cpsf2	100	96.066	Scophthalmus_maximus
ENSSDUG00000004084	cpsf2	100	99.365	ENSSLDG00000024330	cpsf2	100	99.365	Seriola_lalandi_dorsalis
ENSSDUG00000004084	cpsf2	58	96.040	ENSSARG00000009784	-	63	96.040	Sorex_araneus
ENSSDUG00000004084	cpsf2	100	85.932	ENSSPUG00000013485	CPSF2	100	85.932	Sphenodon_punctatus
ENSSDUG00000004084	cpsf2	100	96.950	ENSSPAG00000013284	cpsf2	100	96.950	Stegastes_partitus
ENSSDUG00000004084	cpsf2	100	86.058	ENSSSCG00000002447	CPSF2	100	86.058	Sus_scrofa
ENSSDUG00000004084	cpsf2	100	86.168	ENSTGUG00000012571	-	100	86.168	Taeniopygia_guttata
ENSSDUG00000004084	cpsf2	100	94.536	ENSTRUG00000003742	cpsf2	100	94.536	Takifugu_rubripes
ENSSDUG00000004084	cpsf2	100	93.283	ENSTNIG00000012228	cpsf2	100	94.297	Tetraodon_nigroviridis
ENSSDUG00000004084	cpsf2	91	83.477	ENSTBEG00000004530	CPSF2	94	83.477	Tupaia_belangeri
ENSSDUG00000004084	cpsf2	88	87.500	ENSTTRG00000008697	CPSF2	88	87.500	Tursiops_truncatus
ENSSDUG00000004084	cpsf2	100	86.312	ENSUAMG00000028071	CPSF2	100	86.312	Ursus_americanus
ENSSDUG00000004084	cpsf2	100	86.312	ENSUMAG00000005029	CPSF2	99	91.304	Ursus_maritimus
ENSSDUG00000004084	cpsf2	99	86.168	ENSVPAG00000003503	CPSF2	100	86.168	Vicugna_pacos
ENSSDUG00000004084	cpsf2	100	86.312	ENSVVUG00000024642	CPSF2	100	86.312	Vulpes_vulpes
ENSSDUG00000004084	cpsf2	100	85.425	ENSXETG00000010289	cpsf2	100	85.425	Xenopus_tropicalis
ENSSDUG00000004084	cpsf2	100	95.299	ENSXCOG00000001764	cpsf2	100	95.299	Xiphophorus_couchianus
ENSSDUG00000004084	cpsf2	100	95.807	ENSXMAG00000017048	cpsf2	100	95.807	Xiphophorus_maculatus