EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000004089 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 32379 bases
Position: chrBDQW01000127.1:558751-591129
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000005545	zf-C2H2	PF00096.26	1.4e-51	1	9
ENSSDUP00000005545	zf-C2H2	PF00096.26	1.4e-51	2	9
ENSSDUP00000005545	zf-C2H2	PF00096.26	1.4e-51	3	9
ENSSDUP00000005545	zf-C2H2	PF00096.26	1.4e-51	4	9
ENSSDUP00000005545	zf-C2H2	PF00096.26	1.4e-51	5	9
ENSSDUP00000005545	zf-C2H2	PF00096.26	1.4e-51	6	9
ENSSDUP00000005545	zf-C2H2	PF00096.26	1.4e-51	7	9
ENSSDUP00000005545	zf-C2H2	PF00096.26	1.4e-51	8	9
ENSSDUP00000005545	zf-C2H2	PF00096.26	1.4e-51	9	9
ENSSDUP00000005549	zf-C2H2	PF00096.26	2.6e-45	1	8
ENSSDUP00000005549	zf-C2H2	PF00096.26	2.6e-45	2	8
ENSSDUP00000005549	zf-C2H2	PF00096.26	2.6e-45	3	8
ENSSDUP00000005549	zf-C2H2	PF00096.26	2.6e-45	4	8
ENSSDUP00000005549	zf-C2H2	PF00096.26	2.6e-45	5	8
ENSSDUP00000005549	zf-C2H2	PF00096.26	2.6e-45	6	8
ENSSDUP00000005549	zf-C2H2	PF00096.26	2.6e-45	7	8
ENSSDUP00000005549	zf-C2H2	PF00096.26	2.6e-45	8	8
ENSSDUP00000005570	zf-C2H2	PF00096.26	1.5e-35	1	6
ENSSDUP00000005570	zf-C2H2	PF00096.26	1.5e-35	2	6
ENSSDUP00000005570	zf-C2H2	PF00096.26	1.5e-35	3	6
ENSSDUP00000005570	zf-C2H2	PF00096.26	1.5e-35	4	6
ENSSDUP00000005570	zf-C2H2	PF00096.26	1.5e-35	5	6
ENSSDUP00000005570	zf-C2H2	PF00096.26	1.5e-35	6	6
ENSSDUP00000005549	zf-met	PF12874.7	1.2e-16	1	1
ENSSDUP00000005545	zf-met	PF12874.7	3e-15	1	1
ENSSDUP00000005570	zf-met	PF12874.7	6.5e-14	1	3
ENSSDUP00000005570	zf-met	PF12874.7	6.5e-14	2	3
ENSSDUP00000005570	zf-met	PF12874.7	6.5e-14	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000005678	-	864	-	ENSSDUP00000005570	287 (aa)	-	-
ENSSDUT00000005657	-	780	-	ENSSDUP00000005549	259 (aa)	-	-
ENSSDUT00000005653	-	1170	-	ENSSDUP00000005545	389 (aa)	-	-

Gene Model

Click here to download ENSSDUG00000004089's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000004089's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000004089	-	88	51.429	ENSSDUG00000009577	-	66	51.429
ENSSDUG00000004089	-	96	42.958	ENSSDUG00000020788	-	64	46.018
ENSSDUG00000004089	-	97	44.255	ENSSDUG00000020805	-	85	44.749
ENSSDUG00000004089	-	96	37.500	ENSSDUG00000016450	-	66	40.000
ENSSDUG00000004089	-	96	37.004	ENSSDUG00000001263	-	96	43.850
ENSSDUG00000004089	-	95	43.318	ENSSDUG00000009439	-	92	42.786
ENSSDUG00000004089	-	96	43.137	ENSSDUG00000015159	-	81	45.333
ENSSDUG00000004089	-	68	57.143	ENSSDUG00000020419	-	71	57.143
ENSSDUG00000004089	-	96	44.872	ENSSDUG00000020595	-	86	42.424
ENSSDUG00000004089	-	97	39.394	ENSSDUG00000004892	-	94	35.065
ENSSDUG00000004089	-	95	40.081	ENSSDUG00000016734	-	68	40.081
ENSSDUG00000004089	-	97	59.091	ENSSDUG00000000748	sall1b	51	55.102
ENSSDUG00000004089	-	96	48.810	ENSSDUG00000000946	-	95	48.000
ENSSDUG00000004089	-	97	35.821	ENSSDUG00000010305	-	62	38.542
ENSSDUG00000004089	-	95	45.098	ENSSDUG00000006463	-	86	42.105
ENSSDUG00000004089	-	95	45.455	ENSSDUG00000008329	-	86	44.355
ENSSDUG00000004089	-	95	51.429	ENSSDUG00000004867	-	98	51.429
ENSSDUG00000004089	-	95	47.541	ENSSDUG00000015182	-	69	47.783
ENSSDUG00000004089	-	86	45.333	ENSSDUG00000017250	-	52	45.333
ENSSDUG00000004089	-	90	47.619	ENSSDUG00000011244	-	72	47.619
ENSSDUG00000004089	-	95	47.321	ENSSDUG00000009553	-	54	47.321
ENSSDUG00000004089	-	94	36.111	ENSSDUG00000021415	si:ch211-216l23.1	54	31.757
ENSSDUG00000004089	-	90	54.167	ENSSDUG00000008682	-	67	54.167
ENSSDUG00000004089	-	91	45.679	ENSSDUG00000018060	snai2	66	40.741
ENSSDUG00000004089	-	95	50.400	ENSSDUG00000023765	-	72	48.148
ENSSDUG00000004089	-	91	50.820	ENSSDUG00000023764	-	96	48.066
ENSSDUG00000004089	-	98	39.649	ENSSDUG00000022412	znf648	66	39.931
ENSSDUG00000004089	-	96	40.952	ENSSDUG00000000889	-	75	45.679
ENSSDUG00000004089	-	98	51.754	ENSSDUG00000006808	-	82	51.754
ENSSDUG00000004089	-	96	46.930	ENSSDUG00000009563	-	70	49.398
ENSSDUG00000004089	-	97	42.857	ENSSDUG00000005323	-	95	42.584
ENSSDUG00000004089	-	96	43.299	ENSSDUG00000020397	prdm5	73	38.690
ENSSDUG00000004089	-	95	46.835	ENSSDUG00000009601	-	91	46.179
ENSSDUG00000004089	-	95	46.032	ENSSDUG00000015204	-	93	48.515
ENSSDUG00000004089	-	96	38.012	ENSSDUG00000001918	znf366	50	37.143
ENSSDUG00000004089	-	99	35.102	ENSSDUG00000004144	znf710b	53	35.841
ENSSDUG00000004089	-	96	41.509	ENSSDUG00000002174	-	79	38.438
ENSSDUG00000004089	-	95	38.182	ENSSDUG00000022162	-	50	36.527
ENSSDUG00000004089	-	96	46.774	ENSSDUG00000009534	-	68	46.959
ENSSDUG00000004089	-	93	51.493	ENSSDUG00000013048	-	68	51.493
ENSSDUG00000004089	-	96	40.726	ENSSDUG00000003003	znf319b	88	35.472
ENSSDUG00000004089	-	95	46.032	ENSSDUG00000006426	-	95	44.348
ENSSDUG00000004089	-	99	52.941	ENSSDUG00000015254	-	98	42.400
ENSSDUG00000004089	-	98	40.574	ENSSDUG00000019932	ZNF319	96	41.126
ENSSDUG00000004089	-	97	44.856	ENSSDUG00000015191	-	95	44.856
ENSSDUG00000004089	-	93	45.926	ENSSDUG00000000786	-	92	50.909
ENSSDUG00000004089	-	96	30.131	ENSSDUG00000015931	si:dkey-89b17.4	61	31.522
ENSSDUG00000004089	-	96	38.060	ENSSDUG00000007752	scrt1b	67	39.831
ENSSDUG00000004089	-	96	44.099	ENSSDUG00000000705	-	63	45.946
ENSSDUG00000004089	-	97	45.833	ENSSDUG00000015013	-	66	50.638
ENSSDUG00000004089	-	92	48.438	ENSSDUG00000014574	znf526	63	44.660
ENSSDUG00000004089	-	95	41.791	ENSSDUG00000011604	gfi1b	51	49.057
ENSSDUG00000004089	-	95	46.500	ENSSDUG00000009421	-	89	46.012
ENSSDUG00000004089	-	95	46.429	ENSSDUG00000009425	-	51	46.988
ENSSDUG00000004089	-	95	50.000	ENSSDUG00000002195	-	99	54.054
ENSSDUG00000004089	-	95	45.098	ENSSDUG00000008943	-	93	43.802
ENSSDUG00000004089	-	96	40.741	ENSSDUG00000000871	-	94	39.394
ENSSDUG00000004089	-	95	43.333	ENSSDUG00000020774	-	51	45.098
ENSSDUG00000004089	-	95	41.071	ENSSDUG00000002675	znf646	73	38.889
ENSSDUG00000004089	-	95	44.792	ENSSDUG00000015622	-	80	43.976
ENSSDUG00000004089	-	94	43.200	ENSSDUG00000004650	-	97	45.806
ENSSDUG00000004089	-	97	38.596	ENSSDUG00000014540	znf341	53	37.017
ENSSDUG00000004089	-	99	46.250	ENSSDUG00000011170	znf236	63	46.250
ENSSDUG00000004089	-	94	57.143	ENSSDUG00000022914	-	50	57.143
ENSSDUG00000004089	-	95	47.619	ENSSDUG00000005401	-	91	45.089
ENSSDUG00000004089	-	97	36.036	ENSSDUG00000018835	PRDM15	51	35.922
ENSSDUG00000004089	-	93	41.117	ENSSDUG00000022170	zbtb49	57	45.399
ENSSDUG00000004089	-	95	41.509	ENSSDUG00000012926	-	72	41.509
ENSSDUG00000004089	-	97	38.211	ENSSDUG00000002488	-	57	44.444
ENSSDUG00000004089	-	96	38.650	ENSSDUG00000000695	-	77	41.706
ENSSDUG00000004089	-	94	42.453	ENSSDUG00000006740	-	77	50.000
ENSSDUG00000004089	-	97	45.299	ENSSDUG00000013904	-	85	44.025
ENSSDUG00000004089	-	96	43.388	ENSSDUG00000020810	-	69	46.835
ENSSDUG00000004089	-	95	42.236	ENSSDUG00000000799	-	71	43.262
ENSSDUG00000004089	-	95	48.101	ENSSDUG00000007336	-	91	47.120
ENSSDUG00000004089	-	93	38.261	ENSSDUG00000001637	scrt2	51	40.351
ENSSDUG00000004089	-	91	44.186	ENSSDUG00000004835	-	73	44.882

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000004089	-	95	48.571	ENSACIG00000017647	-	95	45.532	Amphilophus_citrinellus
ENSSDUG00000004089	-	98	45.133	ENSAOCG00000003277	-	77	53.704	Amphiprion_ocellaris
ENSSDUG00000004089	-	96	76.860	ENSAPEG00000016601	-	83	76.860	Amphiprion_percula
ENSSDUG00000004089	-	96	43.946	ENSACLG00000015989	-	92	40.845	Astatotilapia_calliptera
ENSSDUG00000004089	-	96	48.077	ENSACLG00000005615	-	52	46.701	Astatotilapia_calliptera
ENSSDUG00000004089	-	97	37.453	ENSCSAVG00000002179	-	99	39.412	Ciona_savignyi
ENSSDUG00000004089	-	98	39.344	ENSCGRG00001004047	-	77	43.455	Cricetulus_griseus_chok1gshd
ENSSDUG00000004089	-	91	48.718	ENSCSEG00000001771	-	60	47.234	Cynoglossus_semilaevis
ENSSDUG00000004089	-	95	38.983	ENSEBUG00000002537	-	96	39.149	Eptatretus_burgeri
ENSSDUG00000004089	-	99	43.350	ENSEBUG00000011244	-	92	42.333	Eptatretus_burgeri
ENSSDUG00000004089	-	95	42.017	ENSEBUG00000002589	-	79	41.961	Eptatretus_burgeri
ENSSDUG00000004089	-	96	48.077	ENSHBUG00000020071	-	52	46.701	Haplochromis_burtoni
ENSSDUG00000004089	-	95	47.059	ENSHBUG00000012758	-	91	45.798	Haplochromis_burtoni
ENSSDUG00000004089	-	91	43.243	ENSHBUG00000016546	-	65	50.943	Haplochromis_burtoni
ENSSDUG00000004089	-	92	43.243	ENSMZEG00005027844	-	65	50.943	Maylandia_zebra
ENSSDUG00000004089	-	96	43.893	ENSMZEG00005020731	-	84	44.444	Maylandia_zebra
ENSSDUG00000004089	-	95	50.862	MGP_CAROLIEiJ_G0029612	Zfp141	55	44.298	Mus_caroli
ENSSDUG00000004089	-	94	45.622	ENSMUSG00000092416	Zfp141	55	45.622	Mus_musculus
ENSSDUG00000004089	-	91	48.889	MGP_SPRETEiJ_G0030709	-	91	48.889	Mus_spretus
ENSSDUG00000004089	-	92	51.136	ENSNBRG00000023229	-	80	47.024	Neolamprologus_brichardi
ENSSDUG00000004089	-	95	42.718	ENSONIG00000006238	-	100	42.718	Oreochromis_niloticus
ENSSDUG00000004089	-	97	43.172	ENSONIG00000014100	-	90	41.365	Oreochromis_niloticus
ENSSDUG00000004089	-	95	45.045	ENSONIG00000018188	-	100	47.475	Oreochromis_niloticus
ENSSDUG00000004089	-	97	49.462	ENSPFOG00000007708	-	99	49.462	Poecilia_formosa
ENSSDUG00000004089	-	93	39.823	ENSPLAG00000010448	-	55	44.872	Poecilia_latipinna
ENSSDUG00000004089	-	97	37.838	ENSPCAG00000001613	-	75	42.373	Procavia_capensis
ENSSDUG00000004089	-	95	40.667	ENSPNYG00000005671	-	75	45.070	Pundamilia_nyererei
ENSSDUG00000004089	-	94	41.549	ENSPNAG00000015131	-	95	46.853	Pygocentrus_nattereri
ENSSDUG00000004089	-	98	48.828	ENSSFOG00015000652	ZNF775	83	50.209	Scleropages_formosus
ENSSDUG00000004089	-	94	42.929	ENSSPUG00000007064	-	98	45.106	Sphenodon_punctatus
ENSSDUG00000004089	-	95	36.555	ENSSPAG00000009587	-	99	36.957	Stegastes_partitus
ENSSDUG00000004089	-	95	43.836	ENSSSCG00000032098	-	77	43.836	Sus_scrofa
ENSSDUG00000004089	-	95	39.286	ENSTTRG00000004891	-	76	41.053	Tursiops_truncatus
ENSSDUG00000004089	-	95	41.964	ENSXETG00000030967	-	94	46.288	Xenopus_tropicalis
ENSSDUG00000004089	-	98	37.349	ENSXETG00000015125	-	99	38.947	Xenopus_tropicalis