EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000004151 (Gene tree)
Gene ID: 111226432
Gene Symbol: cnot6b
Alias: zgc:171797
Full Name: CCR4-NOT transcription complex subunit 6
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 15575 bases
Position: chrBDQW01000160.1:677195-692769
Accession: 111226432
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000005654	Exo_endo_phos	PF03372.23	9.5e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000005763	-	7393	XM_022751574	ENSSDUP00000005654	559 (aa)	XP_022607295	UPI000BBE259E

Gene Model

Click here to download ENSSDUG00000004151's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000004151's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000004151	cnot6b	100	74.866	ENSSDUG00000018426	cnot6l	100	74.866

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000004151	cnot6b	100	86.404	ENSG00000113300	CNOT6	100	94.737	Homo_sapiens
ENSSDUG00000004151	cnot6b	100	99.106	ENSAPOG00000009994	cnot6b	100	99.106	Acanthochromis_polyacanthus
ENSSDUG00000004151	cnot6b	100	86.453	ENSAMEG00000000949	CNOT6	99	86.453	Ailuropoda_melanoleuca
ENSSDUG00000004151	cnot6b	100	96.064	ENSACIG00000016566	cnot6b	100	96.064	Amphilophus_citrinellus
ENSSDUG00000004151	cnot6b	100	99.106	ENSAOCG00000006893	cnot6b	100	99.106	Amphiprion_ocellaris
ENSSDUG00000004151	cnot6b	100	99.106	ENSAPEG00000016949	cnot6b	100	99.106	Amphiprion_percula
ENSSDUG00000004151	cnot6b	100	96.064	ENSATEG00000007862	cnot6b	100	96.064	Anabas_testudineus
ENSSDUG00000004151	cnot6b	100	87.120	ENSAPLG00000012715	CNOT6	99	87.478	Anas_platyrhynchos
ENSSDUG00000004151	cnot6b	100	86.762	ENSACAG00000016548	CNOT6	100	86.762	Anolis_carolinensis
ENSSDUG00000004151	cnot6b	100	86.404	ENSANAG00000030436	CNOT6	96	86.404	Aotus_nancymaae
ENSSDUG00000004151	cnot6b	100	96.780	ENSACLG00000008279	cnot6b	100	96.780	Astatotilapia_calliptera
ENSSDUG00000004151	cnot6b	100	89.982	ENSAMXG00000034694	cnot6b	100	89.982	Astyanax_mexicanus
ENSSDUG00000004151	cnot6b	100	91.234	ENSAMXG00000019140	cnot6a	100	91.234	Astyanax_mexicanus
ENSSDUG00000004151	cnot6b	100	86.762	ENSBTAG00000017362	CNOT6	100	86.762	Bos_taurus
ENSSDUG00000004151	cnot6b	100	86.225	ENSCJAG00000009795	CNOT6	100	86.225	Callithrix_jacchus
ENSSDUG00000004151	cnot6b	100	86.762	ENSCAFG00000000464	CNOT6	100	86.762	Canis_familiaris
ENSSDUG00000004151	cnot6b	100	86.762	ENSCAFG00020002441	CNOT6	100	86.762	Canis_lupus_dingo
ENSSDUG00000004151	cnot6b	100	86.583	ENSCHIG00000019100	CNOT6	100	86.583	Capra_hircus
ENSSDUG00000004151	cnot6b	100	85.152	ENSTSYG00000003982	CNOT6	100	85.152	Carlito_syrichta
ENSSDUG00000004151	cnot6b	100	81.753	ENSCPOG00000035657	CNOT6	100	81.753	Cavia_porcellus
ENSSDUG00000004151	cnot6b	100	81.932	ENSCCAG00000033670	CNOT6	100	81.932	Cebus_capucinus
ENSSDUG00000004151	cnot6b	100	86.404	ENSCATG00000042014	CNOT6	100	86.404	Cercocebus_atys
ENSSDUG00000004151	cnot6b	100	85.331	ENSCLAG00000010489	CNOT6	100	85.331	Chinchilla_lanigera
ENSSDUG00000004151	cnot6b	100	86.404	ENSCSAG00000008165	CNOT6	100	86.404	Chlorocebus_sabaeus
ENSSDUG00000004151	cnot6b	100	86.047	ENSCHOG00000009680	CNOT6	100	86.404	Choloepus_hoffmanni
ENSSDUG00000004151	cnot6b	100	87.299	ENSCPBG00000008908	CNOT6	100	87.657	Chrysemys_picta_bellii
ENSSDUG00000004151	cnot6b	100	86.583	ENSCANG00000026756	CNOT6	100	86.583	Colobus_angolensis_palliatus
ENSSDUG00000004151	cnot6b	100	84.973	ENSCGRG00001011452	Cnot6	100	84.973	Cricetulus_griseus_chok1gshd
ENSSDUG00000004151	cnot6b	100	83.005	ENSCGRG00000010407	Cnot6	100	83.005	Cricetulus_griseus_crigri
ENSSDUG00000004151	cnot6b	100	98.211	ENSCSEG00000010939	cnot6b	100	98.211	Cynoglossus_semilaevis
ENSSDUG00000004151	cnot6b	100	96.243	ENSCVAG00000010538	cnot6b	100	96.243	Cyprinodon_variegatus
ENSSDUG00000004151	cnot6b	100	89.267	ENSDARG00000101072	cnot6b	100	89.267	Danio_rerio
ENSSDUG00000004151	cnot6b	100	90.519	ENSDARG00000008255	cnot6a	100	90.519	Danio_rerio
ENSSDUG00000004151	cnot6b	100	87.120	ENSDNOG00000041644	CNOT6	100	87.120	Dasypus_novemcinctus
ENSSDUG00000004151	cnot6b	100	77.639	ENSDORG00000001708	Cnot6	100	77.639	Dipodomys_ordii
ENSSDUG00000004151	cnot6b	100	69.464	ENSETEG00000006975	CNOT6	100	69.464	Echinops_telfairi
ENSSDUG00000004151	cnot6b	100	86.583	ENSEASG00005012794	-	100	86.583	Equus_asinus_asinus
ENSSDUG00000004151	cnot6b	90	81.474	ENSEASG00005012957	-	99	81.474	Equus_asinus_asinus
ENSSDUG00000004151	cnot6b	100	81.753	ENSECAG00000012704	-	99	81.753	Equus_caballus
ENSSDUG00000004151	cnot6b	100	87.120	ENSECAG00000019325	CNOT6	100	87.120	Equus_caballus
ENSSDUG00000004151	cnot6b	100	85.689	ENSEEUG00000015382	CNOT6	100	85.689	Erinaceus_europaeus
ENSSDUG00000004151	cnot6b	100	89.594	ENSELUG00000015981	cnot6b	99	89.594	Esox_lucius
ENSSDUG00000004151	cnot6b	100	87.835	ENSELUG00000024580	cnot6a	100	87.835	Esox_lucius
ENSSDUG00000004151	cnot6b	100	86.941	ENSFCAG00000001881	CNOT6	100	86.941	Felis_catus
ENSSDUG00000004151	cnot6b	100	87.299	ENSFALG00000007699	CNOT6	100	87.657	Ficedula_albicollis
ENSSDUG00000004151	cnot6b	100	84.794	ENSFDAG00000001999	CNOT6	100	84.794	Fukomys_damarensis
ENSSDUG00000004151	cnot6b	68	95.312	ENSFHEG00000013756	cnot6b	99	95.312	Fundulus_heteroclitus
ENSSDUG00000004151	cnot6b	95	95.085	ENSGMOG00000009767	cnot6b	99	95.085	Gadus_morhua
ENSSDUG00000004151	cnot6b	100	87.120	ENSGALG00000034316	CNOT6	100	87.478	Gallus_gallus
ENSSDUG00000004151	cnot6b	100	96.601	ENSGAFG00000008525	cnot6b	100	96.601	Gambusia_affinis
ENSSDUG00000004151	cnot6b	95	94.140	ENSGACG00000018046	cnot6b	99	94.140	Gasterosteus_aculeatus
ENSSDUG00000004151	cnot6b	100	71.786	ENSGAGG00000012176	CNOT6	100	72.143	Gopherus_agassizii
ENSSDUG00000004151	cnot6b	100	86.404	ENSGGOG00000003675	CNOT6	100	86.404	Gorilla_gorilla
ENSSDUG00000004151	cnot6b	100	96.959	ENSHBUG00000002819	cnot6b	100	96.959	Haplochromis_burtoni
ENSSDUG00000004151	cnot6b	100	85.152	ENSHGLG00000017756	CNOT6	100	85.152	Heterocephalus_glaber_female
ENSSDUG00000004151	cnot6b	100	85.152	ENSHGLG00100005747	CNOT6	100	85.152	Heterocephalus_glaber_male
ENSSDUG00000004151	cnot6b	100	96.243	ENSHCOG00000016176	cnot6b	100	96.243	Hippocampus_comes
ENSSDUG00000004151	cnot6b	100	90.340	ENSIPUG00000019831	cnot6a	100	90.340	Ictalurus_punctatus
ENSSDUG00000004151	cnot6b	100	90.519	ENSIPUG00000017482	cnot6b	100	90.519	Ictalurus_punctatus
ENSSDUG00000004151	cnot6b	100	86.225	ENSSTOG00000002803	CNOT6	100	86.225	Ictidomys_tridecemlineatus
ENSSDUG00000004151	cnot6b	100	85.868	ENSJJAG00000012296	Cnot6	100	85.868	Jaculus_jaculus
ENSSDUG00000004151	cnot6b	100	96.243	ENSKMAG00000004640	cnot6b	100	96.243	Kryptolebias_marmoratus
ENSSDUG00000004151	cnot6b	100	97.317	ENSLBEG00000027917	cnot6b	100	97.317	Labrus_bergylta
ENSSDUG00000004151	cnot6b	100	94.275	ENSLOCG00000010102	cnot6b	99	94.275	Lepisosteus_oculatus
ENSSDUG00000004151	cnot6b	100	87.120	ENSLAFG00000016742	CNOT6	100	87.120	Loxodonta_africana
ENSSDUG00000004151	cnot6b	100	86.404	ENSMFAG00000030867	CNOT6	100	86.404	Macaca_fascicularis
ENSSDUG00000004151	cnot6b	100	86.404	ENSMMUG00000018690	CNOT6	100	86.404	Macaca_mulatta
ENSSDUG00000004151	cnot6b	100	86.404	ENSMNEG00000038565	CNOT6	100	86.404	Macaca_nemestrina
ENSSDUG00000004151	cnot6b	100	86.404	ENSMLEG00000010555	CNOT6	100	86.404	Mandrillus_leucophaeus
ENSSDUG00000004151	cnot6b	100	99.463	ENSMAMG00000007515	cnot6b	100	99.463	Mastacembelus_armatus
ENSSDUG00000004151	cnot6b	100	96.780	ENSMZEG00005012899	cnot6b	100	96.780	Maylandia_zebra
ENSSDUG00000004151	cnot6b	100	85.689	ENSMAUG00000019798	Cnot6	100	85.689	Mesocricetus_auratus
ENSSDUG00000004151	cnot6b	100	84.615	ENSMICG00000013018	-	100	84.615	Microcebus_murinus
ENSSDUG00000004151	cnot6b	98	78.205	ENSMICG00000028378	-	99	78.205	Microcebus_murinus
ENSSDUG00000004151	cnot6b	100	85.689	ENSMOCG00000021662	Cnot6	100	85.689	Microtus_ochrogaster
ENSSDUG00000004151	cnot6b	100	94.454	ENSMMOG00000003227	cnot6b	100	94.454	Mola_mola
ENSSDUG00000004151	cnot6b	100	86.583	ENSMODG00000003979	CNOT6	100	86.941	Monodelphis_domestica
ENSSDUG00000004151	cnot6b	100	98.927	ENSMALG00000014251	cnot6b	100	98.927	Monopterus_albus
ENSSDUG00000004151	cnot6b	100	85.868	MGP_CAROLIEiJ_G0016277	Cnot6	100	85.868	Mus_caroli
ENSSDUG00000004151	cnot6b	100	85.868	ENSMUSG00000020362	Cnot6	100	85.868	Mus_musculus
ENSSDUG00000004151	cnot6b	100	85.868	MGP_PahariEiJ_G0017413	Cnot6	100	85.868	Mus_pahari
ENSSDUG00000004151	cnot6b	100	85.868	MGP_SPRETEiJ_G0017122	Cnot6	100	85.868	Mus_spretus
ENSSDUG00000004151	cnot6b	100	87.120	ENSMPUG00000000587	CNOT6	96	87.120	Mustela_putorius_furo
ENSSDUG00000004151	cnot6b	100	85.284	ENSMLUG00000010257	CNOT6	100	85.284	Myotis_lucifugus
ENSSDUG00000004151	cnot6b	100	84.973	ENSNGAG00000008269	Cnot6	100	85.152	Nannospalax_galili
ENSSDUG00000004151	cnot6b	100	96.959	ENSNBRG00000010798	cnot6b	100	96.959	Neolamprologus_brichardi
ENSSDUG00000004151	cnot6b	100	85.331	ENSNLEG00000002322	CNOT6	100	85.331	Nomascus_leucogenys
ENSSDUG00000004151	cnot6b	81	83.796	ENSMEUG00000000025	CNOT6	81	84.722	Notamacropus_eugenii
ENSSDUG00000004151	cnot6b	88	86.667	ENSOPRG00000008244	-	88	86.667	Ochotona_princeps
ENSSDUG00000004151	cnot6b	100	84.794	ENSODEG00000007041	CNOT6	100	84.794	Octodon_degus
ENSSDUG00000004151	cnot6b	75	95.981	ENSONIG00000013027	cnot6b	99	95.981	Oreochromis_niloticus
ENSSDUG00000004151	cnot6b	100	86.583	ENSOANG00000010226	CNOT6	100	86.583	Ornithorhynchus_anatinus
ENSSDUG00000004151	cnot6b	100	85.383	ENSOCUG00000011083	CNOT6	100	85.383	Oryctolagus_cuniculus
ENSSDUG00000004151	cnot6b	100	97.138	ENSORLG00000005059	cnot6b	100	97.138	Oryzias_latipes
ENSSDUG00000004151	cnot6b	100	97.138	ENSORLG00020012784	cnot6b	100	97.138	Oryzias_latipes_hni
ENSSDUG00000004151	cnot6b	94	96.750	ENSORLG00015022658	cnot6b	98	96.750	Oryzias_latipes_hsok
ENSSDUG00000004151	cnot6b	100	97.674	ENSOMEG00000005295	cnot6b	100	97.674	Oryzias_melastigma
ENSSDUG00000004151	cnot6b	94	85.551	ENSOGAG00000032470	CNOT6	100	85.551	Otolemur_garnettii
ENSSDUG00000004151	cnot6b	97	86.029	ENSOARG00000001003	CNOT6	100	86.029	Ovis_aries
ENSSDUG00000004151	cnot6b	100	86.404	ENSPPAG00000032253	CNOT6	100	86.404	Pan_paniscus
ENSSDUG00000004151	cnot6b	100	86.762	ENSPPRG00000011912	CNOT6	100	86.762	Panthera_pardus
ENSSDUG00000004151	cnot6b	100	86.762	ENSPTIG00000016794	CNOT6	100	86.762	Panthera_tigris_altaica
ENSSDUG00000004151	cnot6b	100	86.404	ENSPTRG00000017636	CNOT6	100	86.404	Pan_troglodytes
ENSSDUG00000004151	cnot6b	100	86.404	ENSPANG00000016191	CNOT6	100	86.404	Papio_anubis
ENSSDUG00000004151	cnot6b	100	91.055	ENSPKIG00000021368	cnot6b	100	91.055	Paramormyrops_kingsleyae
ENSSDUG00000004151	cnot6b	98	87.179	ENSPSIG00000017307	CNOT6	100	87.546	Pelodiscus_sinensis
ENSSDUG00000004151	cnot6b	100	97.138	ENSPMGG00000011238	cnot6b	100	97.138	Periophthalmus_magnuspinnatus
ENSSDUG00000004151	cnot6b	100	84.973	ENSPEMG00000000627	Cnot6	100	85.152	Peromyscus_maniculatus_bairdii
ENSSDUG00000004151	cnot6b	100	86.583	ENSPCIG00000020319	CNOT6	99	86.941	Phascolarctos_cinereus
ENSSDUG00000004151	cnot6b	100	96.959	ENSPFOG00000006291	cnot6b	100	96.959	Poecilia_formosa
ENSSDUG00000004151	cnot6b	100	93.202	ENSPLAG00000008266	cnot6b	100	93.202	Poecilia_latipinna
ENSSDUG00000004151	cnot6b	100	97.138	ENSPMEG00000009091	cnot6b	100	97.138	Poecilia_mexicana
ENSSDUG00000004151	cnot6b	100	95.170	ENSPREG00000003713	cnot6b	100	95.170	Poecilia_reticulata
ENSSDUG00000004151	cnot6b	100	86.404	ENSPPYG00000016137	CNOT6	100	86.404	Pongo_abelii
ENSSDUG00000004151	cnot6b	71	84.701	ENSPCAG00000005599	-	71	84.701	Procavia_capensis
ENSSDUG00000004151	cnot6b	100	80.680	ENSPCOG00000017359	CNOT6	100	81.395	Propithecus_coquereli
ENSSDUG00000004151	cnot6b	100	83.363	ENSPVAG00000003069	CNOT6	100	83.363	Pteropus_vampyrus
ENSSDUG00000004151	cnot6b	100	96.601	ENSPNYG00000000321	cnot6b	100	96.601	Pundamilia_nyererei
ENSSDUG00000004151	cnot6b	100	90.877	ENSPNAG00000028816	cnot6b	100	90.877	Pygocentrus_nattereri
ENSSDUG00000004151	cnot6b	100	91.592	ENSPNAG00000029586	cnot6a	100	91.592	Pygocentrus_nattereri
ENSSDUG00000004151	cnot6b	100	85.331	ENSRNOG00000054891	Cnot6	100	85.331	Rattus_norvegicus
ENSSDUG00000004151	cnot6b	100	86.225	ENSRBIG00000004309	CNOT6	100	86.225	Rhinopithecus_bieti
ENSSDUG00000004151	cnot6b	100	86.225	ENSRROG00000035378	CNOT6	100	86.225	Rhinopithecus_roxellana
ENSSDUG00000004151	cnot6b	100	86.583	ENSSBOG00000030494	CNOT6	100	86.583	Saimiri_boliviensis_boliviensis
ENSSDUG00000004151	cnot6b	100	86.583	ENSSHAG00000017436	CNOT6	100	86.941	Sarcophilus_harrisii
ENSSDUG00000004151	cnot6b	100	93.560	ENSSFOG00015015133	CNOT6	100	93.918	Scleropages_formosus
ENSSDUG00000004151	cnot6b	100	91.592	ENSSFOG00015022383	cnot6a	96	91.592	Scleropages_formosus
ENSSDUG00000004151	cnot6b	100	97.496	ENSSMAG00000003084	cnot6b	100	97.496	Scophthalmus_maximus
ENSSDUG00000004151	cnot6b	100	99.821	ENSSLDG00000004448	cnot6b	100	99.821	Seriola_lalandi_dorsalis
ENSSDUG00000004151	cnot6b	64	67.967	ENSSARG00000012650	-	100	67.967	Sorex_araneus
ENSSDUG00000004151	cnot6b	100	86.941	ENSSPUG00000007893	CNOT6	100	87.299	Sphenodon_punctatus
ENSSDUG00000004151	cnot6b	100	99.284	ENSSPAG00000000149	cnot6b	100	99.284	Stegastes_partitus
ENSSDUG00000004151	cnot6b	100	86.583	ENSSSCG00000014009	CNOT6	100	86.583	Sus_scrofa
ENSSDUG00000004151	cnot6b	100	86.941	ENSTGUG00000001119	CNOT6	100	87.299	Taeniopygia_guttata
ENSSDUG00000004151	cnot6b	100	93.739	ENSTRUG00000002818	cnot6b	100	93.739	Takifugu_rubripes
ENSSDUG00000004151	cnot6b	100	94.812	ENSTNIG00000004443	cnot6b	99	94.812	Tetraodon_nigroviridis
ENSSDUG00000004151	cnot6b	76	77.612	ENSTBEG00000017094	-	87	77.612	Tupaia_belangeri
ENSSDUG00000004151	cnot6b	100	86.404	ENSTTRG00000009363	CNOT6	100	86.404	Tursiops_truncatus
ENSSDUG00000004151	cnot6b	90	75.992	ENSUAMG00000004579	CNOT6	99	75.992	Ursus_americanus
ENSSDUG00000004151	cnot6b	100	82.594	ENSUMAG00000024577	CNOT6	100	82.594	Ursus_maritimus
ENSSDUG00000004151	cnot6b	84	91.892	ENSVPAG00000003593	CNOT6	83	91.892	Vicugna_pacos
ENSSDUG00000004151	cnot6b	100	86.762	ENSVVUG00000026940	CNOT6	100	86.762	Vulpes_vulpes
ENSSDUG00000004151	cnot6b	100	93.560	ENSXCOG00000003360	cnot6b	100	93.560	Xiphophorus_couchianus
ENSSDUG00000004151	cnot6b	100	97.138	ENSXMAG00000008730	cnot6b	100	97.138	Xiphophorus_maculatus