EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000004182 (Gene tree)
Gene ID: 111225674
Gene Symbol: larp1b
Alias: fc76b04|wu:fc76b04
Full Name: la-related protein 1B-like
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 30363 bases
Position: chrBDQW01000149.1:1819801-1850163
Accession: 111225674
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000005690	La	PF05383.17	4.4e-21	1	1
ENSSDUP00000005666	La	PF05383.17	4.7e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000005801	-	4608	XM_022750689	ENSSDUP00000005690	1028 (aa)	XP_022606410	UPI000BBEEB88
ENSSDUT00000005777	-	4782	XM_022750687	ENSSDUP00000005666	1086 (aa)	XP_022606408	UPI000BBEB5FE

Gene Model

Click here to download ENSSDUG00000004182's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000004182's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000004182	larp1b	92	52.754	ENSSDUG00000000268	larp1	94	59.367

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000004182	larp1b	86	55.499	ENSG00000138709	LARP1B	96	56.754	Homo_sapiens
ENSSDUG00000004182	larp1b	100	86.350	ENSAPOG00000020101	larp1b	100	86.060	Acanthochromis_polyacanthus
ENSSDUG00000004182	larp1b	52	52.076	ENSAMEG00000002748	LARP1B	99	52.076	Ailuropoda_melanoleuca
ENSSDUG00000004182	larp1b	100	80.980	ENSACIG00000023890	larp1b	100	80.403	Amphilophus_citrinellus
ENSSDUG00000004182	larp1b	89	81.122	ENSAOCG00000014268	larp1b	99	81.877	Amphiprion_ocellaris
ENSSDUG00000004182	larp1b	100	86.074	ENSAPEG00000004126	larp1b	100	85.493	Amphiprion_percula
ENSSDUG00000004182	larp1b	100	87.175	ENSATEG00000017849	larp1b	100	86.596	Anabas_testudineus
ENSSDUG00000004182	larp1b	82	54.488	ENSAPLG00000010129	LARP1B	99	54.575	Anas_platyrhynchos
ENSSDUG00000004182	larp1b	83	56.720	ENSACAG00000011338	LARP1B	98	55.110	Anolis_carolinensis
ENSSDUG00000004182	larp1b	61	54.351	ENSANAG00000034618	LARP1B	83	54.494	Aotus_nancymaae
ENSSDUG00000004182	larp1b	100	83.836	ENSACLG00000011948	larp1b	100	83.196	Astatotilapia_calliptera
ENSSDUG00000004182	larp1b	92	61.382	ENSAMXG00000006805	larp1b	86	64.147	Astyanax_mexicanus
ENSSDUG00000004182	larp1b	84	58.191	ENSBTAG00000012135	LARP1B	95	50.936	Bos_taurus
ENSSDUG00000004182	larp1b	82	56.972	ENSCJAG00000003338	LARP1B	99	57.816	Callithrix_jacchus
ENSSDUG00000004182	larp1b	82	60.446	ENSCAFG00000003831	LARP1B	100	60.329	Canis_familiaris
ENSSDUG00000004182	larp1b	85	56.289	ENSCAFG00020018899	LARP1B	95	58.589	Canis_lupus_dingo
ENSSDUG00000004182	larp1b	82	57.096	ENSCHIG00000023144	LARP1B	95	56.955	Capra_hircus
ENSSDUG00000004182	larp1b	82	57.112	ENSCCAG00000021948	LARP1B	97	57.190	Cebus_capucinus
ENSSDUG00000004182	larp1b	82	55.914	ENSCATG00000013541	LARP1B	96	56.161	Cercocebus_atys
ENSSDUG00000004182	larp1b	82	56.699	ENSCSAG00000003582	LARP1B	97	57.174	Chlorocebus_sabaeus
ENSSDUG00000004182	larp1b	81	53.560	ENSCHOG00000005354	LARP1B	96	53.488	Choloepus_hoffmanni
ENSSDUG00000004182	larp1b	90	55.399	ENSCPBG00000017480	LARP1B	89	57.384	Chrysemys_picta_bellii
ENSSDUG00000004182	larp1b	81	57.449	ENSCANG00000026958	LARP1B	96	57.679	Colobus_angolensis_palliatus
ENSSDUG00000004182	larp1b	100	76.778	ENSCSEG00000013519	larp1b	100	77.187	Cynoglossus_semilaevis
ENSSDUG00000004182	larp1b	100	77.737	ENSCVAG00000005046	larp1b	100	77.190	Cyprinodon_variegatus
ENSSDUG00000004182	larp1b	99	62.655	ENSDARG00000061169	larp1b	91	64.385	Danio_rerio
ENSSDUG00000004182	larp1b	75	54.636	ENSETEG00000012497	LARP1B	85	56.222	Echinops_telfairi
ENSSDUG00000004182	larp1b	87	45.560	ENSEBUG00000003668	larp1b	96	45.296	Eptatretus_burgeri
ENSSDUG00000004182	larp1b	81	57.158	ENSEASG00005018106	LARP1B	99	55.670	Equus_asinus_asinus
ENSSDUG00000004182	larp1b	86	56.522	ENSECAG00000001088	LARP1B	84	56.347	Equus_caballus
ENSSDUG00000004182	larp1b	87	52.500	ENSELUG00000023774	larp1b	99	59.320	Esox_lucius
ENSSDUG00000004182	larp1b	50	49.729	ENSFCAG00000014650	-	99	49.548	Felis_catus
ENSSDUG00000004182	larp1b	83	54.784	ENSFALG00000008098	LARP1B	96	55.423	Ficedula_albicollis
ENSSDUG00000004182	larp1b	100	82.150	ENSFHEG00000010264	larp1b	97	81.382	Fundulus_heteroclitus
ENSSDUG00000004182	larp1b	87	70.779	ENSGMOG00000005207	larp1b	85	77.491	Gadus_morhua
ENSSDUG00000004182	larp1b	86	55.208	ENSGALG00000010207	LARP1B	91	53.960	Gallus_gallus
ENSSDUG00000004182	larp1b	89	79.973	ENSGAFG00000012012	larp1b	99	79.499	Gambusia_affinis
ENSSDUG00000004182	larp1b	100	72.599	ENSGACG00000004609	larp1b	100	73.592	Gasterosteus_aculeatus
ENSSDUG00000004182	larp1b	87	56.224	ENSGAGG00000017209	LARP1B	89	57.521	Gopherus_agassizii
ENSSDUG00000004182	larp1b	82	56.176	ENSGGOG00000015900	LARP1B	96	56.645	Gorilla_gorilla
ENSSDUG00000004182	larp1b	100	84.846	ENSHBUG00000009730	larp1b	100	84.170	Haplochromis_burtoni
ENSSDUG00000004182	larp1b	65	83.010	ENSHCOG00000000918	larp1b	95	83.183	Hippocampus_comes
ENSSDUG00000004182	larp1b	96	62.598	ENSIPUG00000012138	larp1b	93	62.761	Ictalurus_punctatus
ENSSDUG00000004182	larp1b	97	78.989	ENSKMAG00000011589	larp1b	96	81.084	Kryptolebias_marmoratus
ENSSDUG00000004182	larp1b	100	85.371	ENSLBEG00000005655	larp1b	100	84.601	Labrus_bergylta
ENSSDUG00000004182	larp1b	91	58.713	ENSLACG00000015247	LARP1B	88	59.980	Latimeria_chalumnae
ENSSDUG00000004182	larp1b	88	64.713	ENSLOCG00000010684	larp1b	94	62.229	Lepisosteus_oculatus
ENSSDUG00000004182	larp1b	82	56.989	ENSMFAG00000002218	LARP1B	96	57.252	Macaca_fascicularis
ENSSDUG00000004182	larp1b	82	57.174	ENSMMUG00000021347	LARP1B	96	57.252	Macaca_mulatta
ENSSDUG00000004182	larp1b	73	62.373	ENSMNEG00000030406	LARP1B	95	62.722	Macaca_nemestrina
ENSSDUG00000004182	larp1b	81	56.937	ENSMLEG00000009306	LARP1B	96	57.596	Mandrillus_leucophaeus
ENSSDUG00000004182	larp1b	99	87.354	ENSMAMG00000000081	larp1b	99	86.868	Mastacembelus_armatus
ENSSDUG00000004182	larp1b	76	84.459	ENSMZEG00005002545	larp1b	100	83.567	Maylandia_zebra
ENSSDUG00000004182	larp1b	79	56.563	ENSMGAG00000004809	LARP1B	99	51.293	Meleagris_gallopavo
ENSSDUG00000004182	larp1b	82	58.624	ENSMICG00000036111	LARP1B	96	58.830	Microcebus_murinus
ENSSDUG00000004182	larp1b	90	54.796	ENSMODG00000012300	LARP1B	87	55.870	Monodelphis_domestica
ENSSDUG00000004182	larp1b	100	86.434	ENSMALG00000003638	larp1b	100	85.659	Monopterus_albus
ENSSDUG00000004182	larp1b	87	56.046	ENSMPUG00000017365	LARP1B	85	56.243	Mustela_putorius_furo
ENSSDUG00000004182	larp1b	83	55.719	ENSMLUG00000010229	LARP1B	99	55.614	Myotis_lucifugus
ENSSDUG00000004182	larp1b	93	77.945	ENSNBRG00000023846	larp1b	100	77.456	Neolamprologus_brichardi
ENSSDUG00000004182	larp1b	82	56.223	ENSNLEG00000013819	LARP1B	97	56.692	Nomascus_leucogenys
ENSSDUG00000004182	larp1b	65	59.344	ENSMEUG00000010308	LARP1B	73	60.720	Notamacropus_eugenii
ENSSDUG00000004182	larp1b	77	51.613	ENSOPRG00000005478	LARP1B	91	51.680	Ochotona_princeps
ENSSDUG00000004182	larp1b	86	82.600	ENSONIG00000012386	larp1b	100	81.595	Oreochromis_niloticus
ENSSDUG00000004182	larp1b	85	54.622	ENSOCUG00000013330	LARP1B	95	56.655	Oryctolagus_cuniculus
ENSSDUG00000004182	larp1b	96	77.000	ENSORLG00000017954	larp1b	100	75.553	Oryzias_latipes
ENSSDUG00000004182	larp1b	97	76.388	ENSORLG00020013081	larp1b	100	75.182	Oryzias_latipes_hni
ENSSDUG00000004182	larp1b	97	76.915	ENSORLG00015009580	larp1b	100	75.626	Oryzias_latipes_hsok
ENSSDUG00000004182	larp1b	100	79.403	ENSOMEG00000004210	larp1b	100	79.692	Oryzias_melastigma
ENSSDUG00000004182	larp1b	82	58.306	ENSOGAG00000005771	LARP1B	100	57.756	Otolemur_garnettii
ENSSDUG00000004182	larp1b	82	57.019	ENSOARG00000015300	LARP1B	96	56.878	Ovis_aries
ENSSDUG00000004182	larp1b	82	56.284	ENSPPAG00000030439	LARP1B	96	56.863	Pan_paniscus
ENSSDUG00000004182	larp1b	50	49.729	ENSPPRG00000002743	-	99	49.548	Panthera_pardus
ENSSDUG00000004182	larp1b	50	49.729	ENSPTIG00000011225	LARP1B	99	49.548	Panthera_tigris_altaica
ENSSDUG00000004182	larp1b	82	56.284	ENSPTRG00000016437	LARP1B	96	56.754	Pan_troglodytes
ENSSDUG00000004182	larp1b	82	56.989	ENSPANG00000012488	LARP1B	96	57.252	Papio_anubis
ENSSDUG00000004182	larp1b	84	59.707	ENSPKIG00000014360	larp1b	95	56.229	Paramormyrops_kingsleyae
ENSSDUG00000004182	larp1b	85	57.479	ENSPSIG00000012885	LARP1B	99	57.585	Pelodiscus_sinensis
ENSSDUG00000004182	larp1b	77	73.106	ENSPMGG00000007207	larp1b	88	77.049	Periophthalmus_magnuspinnatus
ENSSDUG00000004182	larp1b	64	56.381	ENSPMAG00000002700	larp1b	96	50.420	Petromyzon_marinus
ENSSDUG00000004182	larp1b	86	57.364	ENSPCIG00000026516	LARP1B	93	64.789	Phascolarctos_cinereus
ENSSDUG00000004182	larp1b	100	78.419	ENSPFOG00000019519	larp1b	95	81.203	Poecilia_formosa
ENSSDUG00000004182	larp1b	62	78.613	ENSPFOG00000022837	-	99	78.902	Poecilia_formosa
ENSSDUG00000004182	larp1b	100	80.255	ENSPLAG00000007115	larp1b	95	82.932	Poecilia_latipinna
ENSSDUG00000004182	larp1b	100	81.226	ENSPMEG00000001224	larp1b	95	84.318	Poecilia_mexicana
ENSSDUG00000004182	larp1b	82	55.317	ENSPCAG00000007546	LARP1B	96	55.793	Procavia_capensis
ENSSDUG00000004182	larp1b	73	64.493	ENSPCOG00000021874	LARP1B	96	66.406	Propithecus_coquereli
ENSSDUG00000004182	larp1b	83	52.632	ENSPVAG00000005373	LARP1B	96	53.548	Pteropus_vampyrus
ENSSDUG00000004182	larp1b	76	83.208	ENSPNYG00000017357	larp1b	100	82.331	Pundamilia_nyererei
ENSSDUG00000004182	larp1b	93	61.599	ENSPNAG00000008823	larp1b	87	66.885	Pygocentrus_nattereri
ENSSDUG00000004182	larp1b	82	56.989	ENSRROG00000030771	LARP1B	96	57.252	Rhinopithecus_roxellana
ENSSDUG00000004182	larp1b	61	51.994	ENSSHAG00000014474	LARP1B	99	52.149	Sarcophilus_harrisii
ENSSDUG00000004182	larp1b	84	88.357	ENSSMAG00000006347	larp1b	99	85.181	Scophthalmus_maximus
ENSSDUG00000004182	larp1b	89	99.574	ENSSLDG00000014613	larp1b	100	99.574	Seriola_lalandi_dorsalis
ENSSDUG00000004182	larp1b	77	59.038	ENSSPUG00000011837	LARP1B	93	57.346	Sphenodon_punctatus
ENSSDUG00000004182	larp1b	100	86.782	ENSSPAG00000017772	larp1b	100	86.509	Stegastes_partitus
ENSSDUG00000004182	larp1b	89	54.527	ENSSSCG00000034280	LARP1B	99	78.889	Sus_scrofa
ENSSDUG00000004182	larp1b	70	59.198	ENSTGUG00000002098	-	91	60.658	Taeniopygia_guttata
ENSSDUG00000004182	larp1b	99	78.578	ENSTRUG00000005612	larp1b	96	80.447	Takifugu_rubripes
ENSSDUG00000004182	larp1b	89	76.973	ENSTNIG00000012398	larp1b	100	78.223	Tetraodon_nigroviridis
ENSSDUG00000004182	larp1b	61	52.115	ENSTBEG00000004177	LARP1B	65	60.855	Tupaia_belangeri
ENSSDUG00000004182	larp1b	72	59.254	ENSTTRG00000012984	LARP1B	88	57.660	Tursiops_truncatus
ENSSDUG00000004182	larp1b	85	56.270	ENSUMAG00000007373	LARP1B	95	58.362	Ursus_maritimus
ENSSDUG00000004182	larp1b	82	47.727	ENSVPAG00000007223	LARP1B	77	56.714	Vicugna_pacos
ENSSDUG00000004182	larp1b	85	56.813	ENSVVUG00000011307	LARP1B	99	57.816	Vulpes_vulpes
ENSSDUG00000004182	larp1b	90	51.207	ENSXETG00000022512	larp1b	93	51.996	Xenopus_tropicalis
ENSSDUG00000004182	larp1b	82	77.969	ENSXCOG00000004435	larp1b	98	73.333	Xiphophorus_couchianus
ENSSDUG00000004182	larp1b	100	79.764	ENSXMAG00000008150	larp1b	100	79.855	Xiphophorus_maculatus