EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000004321 (Gene tree)
Gene ID: 111223585
Gene Symbol: cth1
Alias: cb266|fa18c01|wu:fa18c01|zfcth1
Full Name: mRNA decay activator protein ZFP36L2-like
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 2252 bases
Position: chrBDQW01000111.1:2074532-2076783
Accession: 111223585
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000005855	zf-CCCH	PF00642.24	1.4e-31	1	4
ENSSDUP00000005855	zf-CCCH	PF00642.24	1.4e-31	2	4
ENSSDUP00000005855	zf-CCCH	PF00642.24	1.4e-31	3	4
ENSSDUP00000005855	zf-CCCH	PF00642.24	1.4e-31	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000005969	-	1524	XM_022747790	ENSSDUP00000005855	328 (aa)	XP_022603511	UPI000BBF3693

Gene Model

Click here to download ENSSDUG00000004321's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu04114	Oocyte meiosis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000004321's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000004321	cth1	90	71.525	ENSAPOG00000012552	cth1	95	71.525	Acanthochromis_polyacanthus
ENSSDUG00000004321	cth1	88	63.763	ENSACIG00000016026	cth1	99	64.776	Amphilophus_citrinellus
ENSSDUG00000004321	cth1	100	75.000	ENSAOCG00000001644	cth1	100	75.000	Amphiprion_ocellaris
ENSSDUG00000004321	cth1	100	75.000	ENSAPEG00000008930	cth1	100	75.000	Amphiprion_percula
ENSSDUG00000004321	cth1	99	81.402	ENSATEG00000002281	cth1	97	78.659	Anabas_testudineus
ENSSDUG00000004321	cth1	90	61.486	ENSACLG00000015353	cth1	95	61.873	Astatotilapia_calliptera
ENSSDUG00000004321	cth1	97	57.798	ENSAMXG00000025717	cth1	92	58.576	Astyanax_mexicanus
ENSSDUG00000004321	cth1	100	74.018	ENSCSEG00000014617	cth1	100	74.320	Cynoglossus_semilaevis
ENSSDUG00000004321	cth1	100	60.790	ENSCVAG00000001680	cth1	65	60.790	Cyprinodon_variegatus
ENSSDUG00000004321	cth1	91	58.306	ENSDARG00000057328	cth1	90	59.091	Danio_rerio
ENSSDUG00000004321	cth1	99	57.803	ENSELUG00000012738	cth1	99	56.140	Esox_lucius
ENSSDUG00000004321	cth1	100	64.329	ENSFHEG00000022665	cth1	100	62.424	Fundulus_heteroclitus
ENSSDUG00000004321	cth1	99	66.265	ENSGMOG00000007360	cth1	100	64.157	Gadus_morhua
ENSSDUG00000004321	cth1	100	63.415	ENSGAFG00000019288	cth1	100	62.805	Gambusia_affinis
ENSSDUG00000004321	cth1	99	70.031	ENSGACG00000000802	cth1	99	68.807	Gasterosteus_aculeatus
ENSSDUG00000004321	cth1	100	62.805	ENSHBUG00000014400	cth1	100	63.142	Haplochromis_burtoni
ENSSDUG00000004321	cth1	99	51.829	ENSHCOG00000010276	cth1	99	50.000	Hippocampus_comes
ENSSDUG00000004321	cth1	97	59.509	ENSIPUG00000018040	cth1	90	58.117	Ictalurus_punctatus
ENSSDUG00000004321	cth1	100	66.768	ENSKMAG00000005944	cth1	100	67.378	Kryptolebias_marmoratus
ENSSDUG00000004321	cth1	100	82.121	ENSLBEG00000019253	cth1	100	83.030	Labrus_bergylta
ENSSDUG00000004321	cth1	77	49.321	ENSLOCG00000002047	cth1	98	49.321	Lepisosteus_oculatus
ENSSDUG00000004321	cth1	99	61.214	ENSMAMG00000001525	cth1	63	71.250	Mastacembelus_armatus
ENSSDUG00000004321	cth1	100	62.805	ENSMZEG00005022335	cth1	100	63.142	Maylandia_zebra
ENSSDUG00000004321	cth1	95	77.097	ENSMMOG00000020518	cth1	100	75.484	Mola_mola
ENSSDUG00000004321	cth1	100	65.535	ENSMALG00000020738	cth1	58	76.549	Monopterus_albus
ENSSDUG00000004321	cth1	98	57.812	ENSNBRG00000022789	cth1	96	58.204	Neolamprologus_brichardi
ENSSDUG00000004321	cth1	99	65.138	ENSONIG00000021318	cth1	99	64.242	Oreochromis_niloticus
ENSSDUG00000004321	cth1	100	62.236	ENSORLG00000022847	cth1	100	61.631	Oryzias_latipes
ENSSDUG00000004321	cth1	100	62.236	ENSORLG00020011979	cth1	100	62.236	Oryzias_latipes_hni
ENSSDUG00000004321	cth1	100	62.538	ENSORLG00015013084	cth1	100	61.934	Oryzias_latipes_hsok
ENSSDUG00000004321	cth1	100	58.663	ENSOMEG00000005809	cth1	85	59.878	Oryzias_melastigma
ENSSDUG00000004321	cth1	97	53.012	ENSPKIG00000015883	cth1	88	51.274	Paramormyrops_kingsleyae
ENSSDUG00000004321	cth1	99	73.939	ENSPMGG00000004275	cth1	100	73.333	Periophthalmus_magnuspinnatus
ENSSDUG00000004321	cth1	100	65.244	ENSPFOG00000013583	cth1	94	64.634	Poecilia_formosa
ENSSDUG00000004321	cth1	100	65.244	ENSPLAG00000018158	cth1	94	64.634	Poecilia_latipinna
ENSSDUG00000004321	cth1	100	65.244	ENSPMEG00000005744	cth1	100	64.634	Poecilia_mexicana
ENSSDUG00000004321	cth1	99	64.832	ENSPREG00000004099	cth1	100	64.220	Poecilia_reticulata
ENSSDUG00000004321	cth1	91	59.732	ENSPNYG00000016705	cth1	85	59.286	Pundamilia_nyererei
ENSSDUG00000004321	cth1	97	59.202	ENSPNAG00000013147	cth1	90	58.117	Pygocentrus_nattereri
ENSSDUG00000004321	cth1	92	55.128	ENSSFOG00015017190	cth1	79	57.471	Scleropages_formosus
ENSSDUG00000004321	cth1	100	83.537	ENSSMAG00000007977	cth1	100	82.012	Scophthalmus_maximus
ENSSDUG00000004321	cth1	100	96.353	ENSSLDG00000004516	-	100	96.353	Seriola_lalandi_dorsalis
ENSSDUG00000004321	cth1	100	96.960	ENSSLDG00000012760	cth1	100	96.960	Seriola_lalandi_dorsalis
ENSSDUG00000004321	cth1	99	96.341	ENSSLDG00000010023	-	100	96.341	Seriola_lalandi_dorsalis
ENSSDUG00000004321	cth1	100	76.061	ENSSPAG00000018659	cth1	100	76.061	Stegastes_partitus
ENSSDUG00000004321	cth1	99	70.213	ENSTRUG00000012770	cth1	99	69.909	Takifugu_rubripes
ENSSDUG00000004321	cth1	99	67.781	ENSTNIG00000000740	cth1	99	67.477	Tetraodon_nigroviridis
ENSSDUG00000004321	cth1	82	59.851	ENSXCOG00000003710	cth1	82	58.039	Xiphophorus_couchianus
ENSSDUG00000004321	cth1	100	66.159	ENSXMAG00000023885	cth1	100	65.549	Xiphophorus_maculatus