EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000004445 (Gene tree)
Gene ID: 111216970
Gene Symbol: zgc:171927
Alias: -
Full Name: ras-related protein Rab-1B-like
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 5334 bases
Position: chrBDQW01000036.1:2489796-2495129
Accession: 111216970
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000006033	MMR_HSR1	PF01926.23	8.1e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000006157	-	645	XM_022738643	ENSSDUP00000006033	214 (aa)	XP_022594364	UPI000BBF253A

Gene Model

Click here to download ENSSDUG00000004445's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000004445's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000004445	zgc:171927	98	41.905	ENSSDUG00000009735	rab25a	95	41.905
ENSSDUG00000004445	zgc:171927	98	41.509	ENSSDUG00000004551	rab14	97	41.509
ENSSDUG00000004445	zgc:171927	72	36.478	ENSSDUG00000005037	-	75	36.478
ENSSDUG00000004445	zgc:171927	77	38.182	ENSSDUG00000017779	kras	91	37.572
ENSSDUG00000004445	zgc:171927	82	44.886	ENSSDUG00000009835	rab5aa	81	44.886
ENSSDUG00000004445	zgc:171927	87	32.487	ENSSDUG00000014082	si:cabz01085950.1	97	32.487
ENSSDUG00000004445	zgc:171927	79	52.381	ENSSDUG00000002965	rab11ba	77	52.381
ENSSDUG00000004445	zgc:171927	76	41.916	ENSSDUG00000013968	rab33a	70	41.916
ENSSDUG00000004445	zgc:171927	88	54.124	ENSSDUG00000006307	-	97	54.124
ENSSDUG00000004445	zgc:171927	76	64.815	ENSSDUG00000004950	rab35b	80	64.815
ENSSDUG00000004445	zgc:171927	77	38.462	ENSSDUG00000008011	-	82	38.462
ENSSDUG00000004445	zgc:171927	72	39.241	ENSSDUG00000019738	si:dkey-13a21.4	77	39.490
ENSSDUG00000004445	zgc:171927	76	36.585	ENSSDUG00000019086	hrasb	86	36.585
ENSSDUG00000004445	zgc:171927	85	31.156	ENSSDUG00000015078	rasl11a	76	31.156
ENSSDUG00000004445	zgc:171927	58	32.283	ENSSDUG00000010935	arl4d	62	32.283
ENSSDUG00000004445	zgc:171927	75	40.373	ENSSDUG00000013496	-	77	40.373
ENSSDUG00000004445	zgc:171927	85	51.381	ENSSDUG00000002580	rab11a	84	51.381
ENSSDUG00000004445	zgc:171927	55	32.203	ENSSDUG00000000578	arl8a	61	32.203
ENSSDUG00000004445	zgc:171927	71	49.342	ENSSDUG00000006260	rab25b	78	49.342
ENSSDUG00000004445	zgc:171927	96	37.089	ENSSDUG00000004119	rab36	68	37.089
ENSSDUG00000004445	zgc:171927	56	30.833	ENSSDUG00000021055	arl8ba	52	30.833
ENSSDUG00000004445	zgc:171927	96	33.803	ENSSDUG00000010942	rab34a	77	33.803
ENSSDUG00000004445	zgc:171927	76	61.728	ENSSDUG00000005719	si:dkey-16l2.16	77	61.728
ENSSDUG00000004445	zgc:171927	73	35.220	ENSSDUG00000014765	rabl2	68	35.220
ENSSDUG00000004445	zgc:171927	90	31.443	ENSSDUG00000016858	-	95	31.443
ENSSDUG00000004445	zgc:171927	86	39.037	ENSSDUG00000017131	rab22a	94	39.037
ENSSDUG00000004445	zgc:171927	92	75.635	ENSSDUG00000022535	RAB1A	98	75.635
ENSSDUG00000004445	zgc:171927	86	41.379	ENSSDUG00000013050	-	94	41.379
ENSSDUG00000004445	zgc:171927	57	31.746	ENSSDUG00000017586	-	61	31.746
ENSSDUG00000004445	zgc:171927	79	43.860	ENSSDUG00000014091	-	80	43.860
ENSSDUG00000004445	zgc:171927	84	35.000	ENSSDUG00000023508	rab23	97	33.500
ENSSDUG00000004445	zgc:171927	99	44.550	ENSSDUG00000006278	rab11al	96	44.550
ENSSDUG00000004445	zgc:171927	83	80.556	ENSSDUG00000016888	rab1ab	83	80.556
ENSSDUG00000004445	zgc:171927	78	34.524	ENSSDUG00000010675	si:ch73-116o1.2	77	34.524
ENSSDUG00000004445	zgc:171927	79	37.572	ENSSDUG00000007575	rab9b	84	37.572
ENSSDUG00000004445	zgc:171927	99	46.226	ENSSDUG00000013325	rab30	97	46.226
ENSSDUG00000004445	zgc:171927	81	39.306	ENSSDUG00000009251	rab6bb	79	39.306
ENSSDUG00000004445	zgc:171927	75	51.235	ENSSDUG00000003823	rab18a	79	51.235
ENSSDUG00000004445	zgc:171927	82	43.750	ENSSDUG00000023008	rab5c	80	43.750
ENSSDUG00000004445	zgc:171927	82	33.146	ENSSDUG00000009122	rheb	94	33.146
ENSSDUG00000004445	zgc:171927	80	45.930	ENSSDUG00000008505	rab12	71	45.930
ENSSDUG00000004445	zgc:171927	80	42.775	ENSSDUG00000011851	rab42a	79	42.775
ENSSDUG00000004445	zgc:171927	55	30.252	ENSSDUG00000000586	arl4aa	59	30.252
ENSSDUG00000004445	zgc:171927	71	33.553	ENSSDUG00000023163	rras2	81	34.146
ENSSDUG00000004445	zgc:171927	81	48.588	ENSSDUG00000005960	rab18b	86	48.588
ENSSDUG00000004445	zgc:171927	78	47.977	ENSSDUG00000008151	zgc:101559	74	47.977
ENSSDUG00000004445	zgc:171927	80	49.432	ENSSDUG00000004633	RAB15	83	49.432
ENSSDUG00000004445	zgc:171927	96	37.379	ENSSDUG00000021882	rab6ba	94	37.379
ENSSDUG00000004445	zgc:171927	79	49.704	ENSSDUG00000013724	rab2a	99	42.381
ENSSDUG00000004445	zgc:171927	79	32.941	ENSSDUG00000007311	rhebl1	90	32.941
ENSSDUG00000004445	zgc:171927	79	50.296	ENSSDUG00000005627	rab15	79	50.296
ENSSDUG00000004445	zgc:171927	76	34.524	ENSSDUG00000006543	RAB29	84	34.524
ENSSDUG00000004445	zgc:171927	75	39.130	ENSSDUG00000018970	RAB6B	76	39.130
ENSSDUG00000004445	zgc:171927	96	36.150	ENSSDUG00000016760	rab34b	64	36.150
ENSSDUG00000004445	zgc:171927	85	39.801	ENSSDUG00000001791	rab33ba	83	39.801
ENSSDUG00000004445	zgc:171927	57	30.952	ENSSDUG00000011151	-	62	30.952
ENSSDUG00000004445	zgc:171927	68	30.065	ENSSDUG00000020599	-	80	30.065
ENSSDUG00000004445	zgc:171927	72	37.736	ENSSDUG00000003386	rab9a	79	37.736
ENSSDUG00000004445	zgc:171927	99	44.076	ENSSDUG00000013558	rab11bb	96	44.076
ENSSDUG00000004445	zgc:171927	56	30.833	ENSSDUG00000012529	arl8bb	62	30.833
ENSSDUG00000004445	zgc:171927	80	36.047	ENSSDUG00000006618	RAB17	75	36.047
ENSSDUG00000004445	zgc:171927	99	44.550	ENSSDUG00000002934	-	96	44.550
ENSSDUG00000004445	zgc:171927	68	44.737	ENSSDUG00000019885	-	63	44.737
ENSSDUG00000004445	zgc:171927	100	70.561	ENSSDUG00000004698	rab1ba	100	70.561

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000004445	zgc:171927	100	97.196	ENSAPOG00000004980	-	100	97.196	Acanthochromis_polyacanthus
ENSSDUG00000004445	zgc:171927	100	97.196	ENSACIG00000009006	zgc:171927	100	97.196	Amphilophus_citrinellus
ENSSDUG00000004445	zgc:171927	71	89.677	ENSAOCG00000013808	-	93	98.347	Amphiprion_ocellaris
ENSSDUG00000004445	zgc:171927	100	93.925	ENSAOCG00000024149	-	100	93.925	Amphiprion_ocellaris
ENSSDUG00000004445	zgc:171927	100	94.393	ENSAPEG00000022171	zgc:171927	99	94.393	Amphiprion_percula
ENSSDUG00000004445	zgc:171927	100	95.327	ENSATEG00000003430	zgc:171927	100	95.327	Anabas_testudineus
ENSSDUG00000004445	zgc:171927	100	96.262	ENSACLG00000013734	-	100	96.262	Astatotilapia_calliptera
ENSSDUG00000004445	zgc:171927	100	79.535	ENSAMXG00000039486	zgc:171927	100	79.535	Astyanax_mexicanus
ENSSDUG00000004445	zgc:171927	100	91.589	ENSCSEG00000014416	zgc:171927	100	91.589	Cynoglossus_semilaevis
ENSSDUG00000004445	zgc:171927	100	93.458	ENSCVAG00000009222	zgc:171927	100	93.458	Cyprinodon_variegatus
ENSSDUG00000004445	zgc:171927	100	79.070	ENSDARG00000033056	zgc:171927	100	79.070	Danio_rerio
ENSSDUG00000004445	zgc:171927	100	79.630	ENSELUG00000011680	zgc:171927	100	79.630	Esox_lucius
ENSSDUG00000004445	zgc:171927	100	93.925	ENSFHEG00000022176	zgc:171927	100	93.925	Fundulus_heteroclitus
ENSSDUG00000004445	zgc:171927	98	80.569	ENSGMOG00000004979	-	97	80.569	Gadus_morhua
ENSSDUG00000004445	zgc:171927	98	93.301	ENSGAFG00000015702	zgc:171927	84	93.301	Gambusia_affinis
ENSSDUG00000004445	zgc:171927	100	94.860	ENSGACG00000013401	zgc:171927	99	94.860	Gasterosteus_aculeatus
ENSSDUG00000004445	zgc:171927	100	96.262	ENSHBUG00000002397	-	100	96.262	Haplochromis_burtoni
ENSSDUG00000004445	zgc:171927	100	93.458	ENSKMAG00000009856	zgc:171927	100	93.458	Kryptolebias_marmoratus
ENSSDUG00000004445	zgc:171927	98	90.909	ENSLBEG00000027226	-	89	90.909	Labrus_bergylta
ENSSDUG00000004445	zgc:171927	100	91.589	ENSLBEG00000005791	-	100	91.589	Labrus_bergylta
ENSSDUG00000004445	zgc:171927	98	72.381	ENSLOCG00000014692	zgc:171927	96	72.381	Lepisosteus_oculatus
ENSSDUG00000004445	zgc:171927	100	93.925	ENSMAMG00000020135	zgc:171927	100	93.925	Mastacembelus_armatus
ENSSDUG00000004445	zgc:171927	100	96.262	ENSMZEG00005024685	-	100	96.262	Maylandia_zebra
ENSSDUG00000004445	zgc:171927	100	90.187	ENSMMOG00000009833	-	100	90.187	Mola_mola
ENSSDUG00000004445	zgc:171927	100	91.589	ENSMALG00000021129	zgc:171927	100	91.589	Monopterus_albus
ENSSDUG00000004445	zgc:171927	100	95.794	ENSNBRG00000006202	zgc:171927	100	95.794	Neolamprologus_brichardi
ENSSDUG00000004445	zgc:171927	100	90.654	ENSORLG00000000602	zgc:171927	100	90.654	Oryzias_latipes
ENSSDUG00000004445	zgc:171927	100	90.654	ENSORLG00020021071	zgc:171927	100	90.654	Oryzias_latipes_hni
ENSSDUG00000004445	zgc:171927	100	91.121	ENSORLG00015010098	zgc:171927	100	91.121	Oryzias_latipes_hsok
ENSSDUG00000004445	zgc:171927	100	92.056	ENSOMEG00000020594	zgc:171927	100	92.056	Oryzias_melastigma
ENSSDUG00000004445	zgc:171927	100	93.458	ENSPFOG00000013810	zgc:171927	99	93.458	Poecilia_formosa
ENSSDUG00000004445	zgc:171927	100	92.523	ENSPLAG00000005869	zgc:171927	100	92.523	Poecilia_latipinna
ENSSDUG00000004445	zgc:171927	100	93.458	ENSPMEG00000022350	zgc:171927	100	93.458	Poecilia_mexicana
ENSSDUG00000004445	zgc:171927	100	94.393	ENSPREG00000017517	zgc:171927	100	94.393	Poecilia_reticulata
ENSSDUG00000004445	zgc:171927	100	96.262	ENSPNYG00000007520	-	100	96.262	Pundamilia_nyererei
ENSSDUG00000004445	zgc:171927	100	79.535	ENSPNAG00000029574	zgc:171927	100	79.535	Pygocentrus_nattereri
ENSSDUG00000004445	zgc:171927	100	78.140	ENSSFOG00015005464	zgc:171927	99	78.140	Scleropages_formosus
ENSSDUG00000004445	zgc:171927	100	90.187	ENSSMAG00000004416	-	100	90.187	Scophthalmus_maximus
ENSSDUG00000004445	zgc:171927	100	100.000	ENSSLDG00000018024	zgc:171927	100	100.000	Seriola_lalandi_dorsalis
ENSSDUG00000004445	zgc:171927	100	96.262	ENSSPAG00000013533	zgc:171927	100	96.262	Stegastes_partitus
ENSSDUG00000004445	zgc:171927	100	94.860	ENSXCOG00000010695	zgc:171927	100	94.860	Xiphophorus_couchianus
ENSSDUG00000004445	zgc:171927	100	94.860	ENSXMAG00000004683	zgc:171927	100	94.860	Xiphophorus_maculatus