EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000004622 (Gene tree)
Gene ID: 111217351
Gene Symbol: lsg1
Alias: fb99b06|wu:fb99b06|zgc:76988
Full Name: large 60S subunit nuclear export GTPase 1
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 7591 bases
Position: chrBDQW01000002.1:3476256-3483846
Accession: 111217351
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000006299	MMR_HSR1	PF01926.23	5.5e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000006426	-	3786	XM_022739179	ENSSDUP00000006299	642 (aa)	XP_022594900	UPI000BBE9291

Gene Model

Click here to download ENSSDUG00000004622's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000004622's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000004622	lsg1	99	64.487	ENSG00000041802	LSG1	90	77.640	Homo_sapiens
ENSSDUG00000004622	lsg1	100	83.333	ENSAPOG00000009694	lsg1	99	84.724	Acanthochromis_polyacanthus
ENSSDUG00000004622	lsg1	100	63.268	ENSAMEG00000009343	LSG1	98	63.761	Ailuropoda_melanoleuca
ENSSDUG00000004622	lsg1	98	84.603	ENSACIG00000012406	lsg1	98	84.603	Amphilophus_citrinellus
ENSSDUG00000004622	lsg1	100	81.889	ENSAOCG00000016066	lsg1	99	83.281	Amphiprion_ocellaris
ENSSDUG00000004622	lsg1	100	82.043	ENSAPEG00000003252	lsg1	99	83.596	Amphiprion_percula
ENSSDUG00000004622	lsg1	98	86.667	ENSATEG00000011794	lsg1	98	87.619	Anabas_testudineus
ENSSDUG00000004622	lsg1	95	61.807	ENSACAG00000004222	LSG1	100	62.758	Anolis_carolinensis
ENSSDUG00000004622	lsg1	99	64.599	ENSANAG00000021153	LSG1	98	64.778	Aotus_nancymaae
ENSSDUG00000004622	lsg1	100	85.407	ENSACLG00000000520	lsg1	98	85.423	Astatotilapia_calliptera
ENSSDUG00000004622	lsg1	100	74.189	ENSAMXG00000008271	lsg1	98	75.157	Astyanax_mexicanus
ENSSDUG00000004622	lsg1	99	64.492	ENSBTAG00000008461	LSG1	98	64.769	Bos_taurus
ENSSDUG00000004622	lsg1	77	45.882	WBGene00016907	C53H9.2	82	49.744	Caenorhabditis_elegans
ENSSDUG00000004622	lsg1	99	64.448	ENSCJAG00000013962	LSG1	98	64.634	Callithrix_jacchus
ENSSDUG00000004622	lsg1	95	64.890	ENSCAFG00000013445	LSG1	100	65.523	Canis_familiaris
ENSSDUG00000004622	lsg1	100	64.137	ENSCAFG00020002216	LSG1	99	65.306	Canis_lupus_dingo
ENSSDUG00000004622	lsg1	100	66.003	ENSCHIG00000015769	LSG1	98	66.304	Capra_hircus
ENSSDUG00000004622	lsg1	99	64.060	ENSTSYG00000001447	LSG1	98	63.957	Carlito_syrichta
ENSSDUG00000004622	lsg1	95	66.066	ENSCAPG00000009856	LSG1	99	66.230	Cavia_aperea
ENSSDUG00000004622	lsg1	99	63.691	ENSCCAG00000035744	LSG1	98	63.872	Cebus_capucinus
ENSSDUG00000004622	lsg1	99	64.392	ENSCATG00000042060	LSG1	98	63.158	Cercocebus_atys
ENSSDUG00000004622	lsg1	99	63.757	ENSCSAG00000008796	LSG1	90	64.087	Chlorocebus_sabaeus
ENSSDUG00000004622	lsg1	100	66.314	ENSCPBG00000015941	LSG1	82	65.794	Chrysemys_picta_bellii
ENSSDUG00000004622	lsg1	77	51.737	ENSCING00000007079	-	94	58.673	Ciona_intestinalis
ENSSDUG00000004622	lsg1	78	54.217	ENSCSAVG00000002514	-	92	57.209	Ciona_savignyi
ENSSDUG00000004622	lsg1	99	63.609	ENSCANG00000030709	LSG1	98	64.253	Colobus_angolensis_palliatus
ENSSDUG00000004622	lsg1	99	65.000	ENSCGRG00001019846	Lsg1	98	65.149	Cricetulus_griseus_chok1gshd
ENSSDUG00000004622	lsg1	99	65.000	ENSCGRG00000014617	Lsg1	98	64.760	Cricetulus_griseus_crigri
ENSSDUG00000004622	lsg1	98	80.093	ENSCSEG00000008522	lsg1	98	80.093	Cynoglossus_semilaevis
ENSSDUG00000004622	lsg1	98	80.542	ENSCVAG00000002484	lsg1	98	80.794	Cyprinodon_variegatus
ENSSDUG00000004622	lsg1	100	75.926	ENSDARG00000015352	lsg1	98	75.633	Danio_rerio
ENSSDUG00000004622	lsg1	99	63.348	ENSDNOG00000006224	LSG1	98	63.441	Dasypus_novemcinctus
ENSSDUG00000004622	lsg1	99	49.304	FBgn0266284	Ns3	98	49.134	Drosophila_melanogaster
ENSSDUG00000004622	lsg1	88	76.000	ENSETEG00000003888	LSG1	87	79.032	Echinops_telfairi
ENSSDUG00000004622	lsg1	88	56.303	ENSEBUG00000003119	lsg1	85	57.560	Eptatretus_burgeri
ENSSDUG00000004622	lsg1	99	65.172	ENSEASG00005000678	LSG1	98	64.787	Equus_asinus_asinus
ENSSDUG00000004622	lsg1	99	64.286	ENSECAG00000017659	LSG1	98	64.787	Equus_caballus
ENSSDUG00000004622	lsg1	87	59.829	ENSEEUG00000015217	LSG1	85	59.829	Erinaceus_europaeus
ENSSDUG00000004622	lsg1	100	71.994	ENSELUG00000023973	lsg1	98	72.671	Esox_lucius
ENSSDUG00000004622	lsg1	100	63.801	ENSFCAG00000024957	LSG1	98	64.275	Felis_catus
ENSSDUG00000004622	lsg1	92	63.166	ENSFALG00000007210	LSG1	94	63.040	Ficedula_albicollis
ENSSDUG00000004622	lsg1	99	64.407	ENSFDAG00000017373	LSG1	98	64.780	Fukomys_damarensis
ENSSDUG00000004622	lsg1	98	80.317	ENSFHEG00000003680	lsg1	98	80.411	Fundulus_heteroclitus
ENSSDUG00000004622	lsg1	87	82.072	ENSGMOG00000015834	lsg1	98	69.592	Gadus_morhua
ENSSDUG00000004622	lsg1	99	60.784	ENSGALG00000007058	LSG1	86	61.240	Gallus_gallus
ENSSDUG00000004622	lsg1	98	81.081	ENSGAFG00000015831	lsg1	98	81.013	Gambusia_affinis
ENSSDUG00000004622	lsg1	98	82.362	ENSGACG00000009323	lsg1	98	82.362	Gasterosteus_aculeatus
ENSSDUG00000004622	lsg1	99	64.190	ENSGGOG00000000520	LSG1	98	63.567	Gorilla_gorilla
ENSSDUG00000004622	lsg1	100	86.470	ENSHBUG00000005659	lsg1	98	86.508	Haplochromis_burtoni
ENSSDUG00000004622	lsg1	99	62.443	ENSHGLG00000017390	LSG1	98	63.509	Heterocephalus_glaber_female
ENSSDUG00000004622	lsg1	99	62.443	ENSHGLG00100018587	LSG1	98	63.509	Heterocephalus_glaber_male
ENSSDUG00000004622	lsg1	98	81.388	ENSHCOG00000016848	lsg1	98	81.319	Hippocampus_comes
ENSSDUG00000004622	lsg1	100	74.884	ENSIPUG00000008631	lsg1	98	75.436	Ictalurus_punctatus
ENSSDUG00000004622	lsg1	75	58.600	ENSSTOG00000010234	LSG1	92	59.722	Ictidomys_tridecemlineatus
ENSSDUG00000004622	lsg1	99	66.151	ENSJJAG00000015513	Lsg1	98	66.404	Jaculus_jaculus
ENSSDUG00000004622	lsg1	98	78.605	ENSKMAG00000009681	lsg1	98	78.605	Kryptolebias_marmoratus
ENSSDUG00000004622	lsg1	98	82.222	ENSLBEG00000024261	lsg1	98	82.222	Labrus_bergylta
ENSSDUG00000004622	lsg1	100	67.470	ENSLACG00000013399	LSG1	98	67.742	Latimeria_chalumnae
ENSSDUG00000004622	lsg1	98	73.469	ENSLOCG00000004918	lsg1	98	73.594	Lepisosteus_oculatus
ENSSDUG00000004622	lsg1	99	63.775	ENSLAFG00000012919	-	98	65.000	Loxodonta_africana
ENSSDUG00000004622	lsg1	99	64.243	ENSMFAG00000039903	LSG1	98	63.020	Macaca_fascicularis
ENSSDUG00000004622	lsg1	99	64.243	ENSMMUG00000010708	LSG1	98	64.253	Macaca_mulatta
ENSSDUG00000004622	lsg1	99	64.243	ENSMNEG00000031538	LSG1	98	63.020	Macaca_nemestrina
ENSSDUG00000004622	lsg1	99	64.095	ENSMLEG00000041184	LSG1	98	64.253	Mandrillus_leucophaeus
ENSSDUG00000004622	lsg1	100	83.746	ENSMAMG00000000470	lsg1	98	84.202	Mastacembelus_armatus
ENSSDUG00000004622	lsg1	100	86.625	ENSMZEG00005017865	lsg1	98	86.667	Maylandia_zebra
ENSSDUG00000004622	lsg1	88	62.139	ENSMGAG00000007050	LSG1	99	62.309	Meleagris_gallopavo
ENSSDUG00000004622	lsg1	91	63.559	ENSMAUG00000016976	Lsg1	90	64.089	Mesocricetus_auratus
ENSSDUG00000004622	lsg1	99	63.444	ENSMICG00000049087	LSG1	98	64.571	Microcebus_murinus
ENSSDUG00000004622	lsg1	99	64.006	ENSMOCG00000022136	Lsg1	98	64.561	Microtus_ochrogaster
ENSSDUG00000004622	lsg1	85	91.250	ENSMMOG00000008884	lsg1	98	77.690	Mola_mola
ENSSDUG00000004622	lsg1	99	56.703	ENSMODG00000019828	LSG1	98	56.068	Monodelphis_domestica
ENSSDUG00000004622	lsg1	100	65.344	MGP_CAROLIEiJ_G0020648	Lsg1	98	66.667	Mus_caroli
ENSSDUG00000004622	lsg1	100	65.091	ENSMUSG00000022538	Lsg1	98	65.888	Mus_musculus
ENSSDUG00000004622	lsg1	98	64.715	MGP_PahariEiJ_G0016352	Lsg1	98	65.116	Mus_pahari
ENSSDUG00000004622	lsg1	100	65.396	MGP_SPRETEiJ_G0021544	Lsg1	98	66.199	Mus_spretus
ENSSDUG00000004622	lsg1	100	63.554	ENSMPUG00000003734	LSG1	98	63.957	Mustela_putorius_furo
ENSSDUG00000004622	lsg1	100	64.297	ENSMLUG00000012548	LSG1	98	65.038	Myotis_lucifugus
ENSSDUG00000004622	lsg1	99	63.720	ENSNGAG00000021872	Lsg1	98	64.929	Nannospalax_galili
ENSSDUG00000004622	lsg1	99	64.902	ENSNLEG00000008293	LSG1	98	64.869	Nomascus_leucogenys
ENSSDUG00000004622	lsg1	68	72.165	ENSMEUG00000009041	-	84	72.165	Notamacropus_eugenii
ENSSDUG00000004622	lsg1	100	85.781	ENSONIG00000002635	lsg1	98	86.299	Oreochromis_niloticus
ENSSDUG00000004622	lsg1	95	65.827	ENSOANG00000012742	LSG1	99	65.827	Ornithorhynchus_anatinus
ENSSDUG00000004622	lsg1	99	64.511	ENSOCUG00000004817	LSG1	98	64.832	Oryctolagus_cuniculus
ENSSDUG00000004622	lsg1	98	79.683	ENSORLG00000007695	lsg1	98	79.524	Oryzias_latipes
ENSSDUG00000004622	lsg1	98	80.317	ENSORLG00020016286	lsg1	98	80.317	Oryzias_latipes_hni
ENSSDUG00000004622	lsg1	98	78.889	ENSORLG00015012025	lsg1	98	79.206	Oryzias_latipes_hsok
ENSSDUG00000004622	lsg1	98	77.813	ENSOMEG00000022379	lsg1	98	78.130	Oryzias_melastigma
ENSSDUG00000004622	lsg1	99	63.798	ENSOGAG00000003475	LSG1	98	63.843	Otolemur_garnettii
ENSSDUG00000004622	lsg1	100	65.053	ENSOARG00000020403	LSG1	98	65.031	Ovis_aries
ENSSDUG00000004622	lsg1	99	64.531	ENSPPAG00000029271	LSG1	98	64.134	Pan_paniscus
ENSSDUG00000004622	lsg1	100	63.134	ENSPPRG00000010281	LSG1	98	63.595	Panthera_pardus
ENSSDUG00000004622	lsg1	100	63.801	ENSPTIG00000010789	LSG1	98	64.275	Panthera_tigris_altaica
ENSSDUG00000004622	lsg1	99	64.382	ENSPTRG00000015760	LSG1	98	63.982	Pan_troglodytes
ENSSDUG00000004622	lsg1	99	64.095	ENSPANG00000018249	LSG1	98	62.866	Papio_anubis
ENSSDUG00000004622	lsg1	99	72.222	ENSPKIG00000002895	lsg1	98	72.727	Paramormyrops_kingsleyae
ENSSDUG00000004622	lsg1	96	62.693	ENSPSIG00000009821	LSG1	99	62.693	Pelodiscus_sinensis
ENSSDUG00000004622	lsg1	95	78.990	ENSPMGG00000000931	lsg1	100	78.990	Periophthalmus_magnuspinnatus
ENSSDUG00000004622	lsg1	99	63.293	ENSPEMG00000012082	-	98	64.375	Peromyscus_maniculatus_bairdii
ENSSDUG00000004622	lsg1	99	60.180	ENSPMAG00000007451	lsg1	98	60.395	Petromyzon_marinus
ENSSDUG00000004622	lsg1	98	65.789	ENSPCIG00000013890	LSG1	80	65.789	Phascolarctos_cinereus
ENSSDUG00000004622	lsg1	98	81.876	ENSPFOG00000021882	lsg1	98	81.804	Poecilia_formosa
ENSSDUG00000004622	lsg1	98	80.922	ENSPLAG00000019536	lsg1	98	80.854	Poecilia_latipinna
ENSSDUG00000004622	lsg1	98	80.824	ENSPMEG00000017281	lsg1	98	80.915	Poecilia_mexicana
ENSSDUG00000004622	lsg1	98	69.844	ENSPREG00000006048	lsg1	98	69.938	Poecilia_reticulata
ENSSDUG00000004622	lsg1	92	62.621	ENSPPYG00000014425	LSG1	98	62.479	Pongo_abelii
ENSSDUG00000004622	lsg1	89	73.333	ENSPCAG00000005511	LSG1	88	77.419	Procavia_capensis
ENSSDUG00000004622	lsg1	99	63.308	ENSPCOG00000012360	LSG1	98	64.067	Propithecus_coquereli
ENSSDUG00000004622	lsg1	100	85.407	ENSPNYG00000021994	lsg1	98	85.423	Pundamilia_nyererei
ENSSDUG00000004622	lsg1	100	76.579	ENSPNAG00000015533	lsg1	98	76.730	Pygocentrus_nattereri
ENSSDUG00000004622	lsg1	100	64.307	ENSRNOG00000001727	Lsg1	98	65.237	Rattus_norvegicus
ENSSDUG00000004622	lsg1	99	64.242	ENSRBIG00000029053	LSG1	98	63.344	Rhinopithecus_bieti
ENSSDUG00000004622	lsg1	99	64.242	ENSRROG00000037702	LSG1	98	63.344	Rhinopithecus_roxellana
ENSSDUG00000004622	lsg1	85	38.036	YGL099W	LSG1	67	51.064	Saccharomyces_cerevisiae
ENSSDUG00000004622	lsg1	99	64.599	ENSSBOG00000034938	LSG1	98	64.939	Saimiri_boliviensis_boliviensis
ENSSDUG00000004622	lsg1	78	61.932	ENSSHAG00000003487	LSG1	100	61.932	Sarcophilus_harrisii
ENSSDUG00000004622	lsg1	98	76.228	ENSSFOG00015008955	lsg1	98	76.228	Scleropages_formosus
ENSSDUG00000004622	lsg1	100	95.794	ENSSLDG00000010869	lsg1	100	95.794	Seriola_lalandi_dorsalis
ENSSDUG00000004622	lsg1	81	65.396	ENSSARG00000012981	LSG1	82	64.088	Sorex_araneus
ENSSDUG00000004622	lsg1	100	66.066	ENSSPUG00000016347	LSG1	98	65.798	Sphenodon_punctatus
ENSSDUG00000004622	lsg1	100	79.412	ENSSPAG00000005508	lsg1	99	81.991	Stegastes_partitus
ENSSDUG00000004622	lsg1	100	64.165	ENSSSCG00000011827	LSG1	98	63.750	Sus_scrofa
ENSSDUG00000004622	lsg1	89	60.033	ENSTGUG00000009068	LSG1	100	61.167	Taeniopygia_guttata
ENSSDUG00000004622	lsg1	98	76.228	ENSTRUG00000017380	lsg1	98	76.341	Takifugu_rubripes
ENSSDUG00000004622	lsg1	98	81.876	ENSTNIG00000015570	lsg1	98	82.120	Tetraodon_nigroviridis
ENSSDUG00000004622	lsg1	91	70.000	ENSTTRG00000000559	LSG1	89	70.000	Tursiops_truncatus
ENSSDUG00000004622	lsg1	100	63.348	ENSUAMG00000012454	LSG1	98	64.067	Ursus_americanus
ENSSDUG00000004622	lsg1	100	63.348	ENSUMAG00000000855	LSG1	98	64.067	Ursus_maritimus
ENSSDUG00000004622	lsg1	95	62.041	ENSVPAG00000012400	LSG1	100	62.041	Vicugna_pacos
ENSSDUG00000004622	lsg1	95	64.151	ENSVVUG00000008956	LSG1	98	64.067	Vulpes_vulpes
ENSSDUG00000004622	lsg1	100	66.515	ENSXETG00000003451	lsg1	98	66.872	Xenopus_tropicalis
ENSSDUG00000004622	lsg1	98	81.818	ENSXCOG00000003239	lsg1	98	81.905	Xiphophorus_couchianus
ENSSDUG00000004622	lsg1	98	80.715	ENSXMAG00000005536	lsg1	98	80.650	Xiphophorus_maculatus