EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000004642 (Gene tree)
Gene ID: 111225433
Gene Symbol: ddb1
Alias: zgc:63840
Full Name: damage specific DNA binding protein 1
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 57644 bases
Position: chrBDQW01000012.1:958504-1016147
Accession: 111225433
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000006352	CPSF_A	PF03178.15	2.8e-85	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000006480	-	4180	XM_022750302	ENSSDUP00000006352	1140 (aa)	XP_022606023	UPI000BBE4FBB

Gene Model

Click here to download ENSSDUG00000004642's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03420	Nucleotide excision repair	KEGG
sdu04120	Ubiquitin mediated proteolysis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000004642's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000004642	ddb1	100	91.316	ENSG00000167986	DDB1	100	96.575	Homo_sapiens
ENSSDUG00000004642	ddb1	98	99.372	ENSAPOG00000005036	ddb1	99	99.388	Acanthochromis_polyacanthus
ENSSDUG00000004642	ddb1	100	91.404	ENSAMEG00000016518	DDB1	100	91.404	Ailuropoda_melanoleuca
ENSSDUG00000004642	ddb1	86	98.980	ENSACIG00000020624	ddb1	99	98.980	Amphilophus_citrinellus
ENSSDUG00000004642	ddb1	100	99.386	ENSAOCG00000003066	ddb1	100	99.386	Amphiprion_ocellaris
ENSSDUG00000004642	ddb1	100	99.386	ENSAPEG00000000092	ddb1	100	99.386	Amphiprion_percula
ENSSDUG00000004642	ddb1	94	99.256	ENSATEG00000020571	ddb1	97	99.256	Anabas_testudineus
ENSSDUG00000004642	ddb1	99	89.912	ENSAPLG00000007174	DDB1	99	89.912	Anas_platyrhynchos
ENSSDUG00000004642	ddb1	100	90.877	ENSACAG00000017758	DDB1	100	90.877	Anolis_carolinensis
ENSSDUG00000004642	ddb1	100	91.316	ENSANAG00000021878	DDB1	100	91.316	Aotus_nancymaae
ENSSDUG00000004642	ddb1	100	98.860	ENSACLG00000012401	ddb1	100	98.860	Astatotilapia_calliptera
ENSSDUG00000004642	ddb1	100	91.316	ENSBTAG00000021569	DDB1	93	91.316	Bos_taurus
ENSSDUG00000004642	ddb1	100	36.955	WBGene00010890	ddb-1	100	36.955	Caenorhabditis_elegans
ENSSDUG00000004642	ddb1	100	91.316	ENSCJAG00000019319	DDB1	100	91.316	Callithrix_jacchus
ENSSDUG00000004642	ddb1	100	91.404	ENSCAFG00000016264	DDB1	100	91.404	Canis_familiaris
ENSSDUG00000004642	ddb1	94	91.628	ENSCAFG00020012722	DDB1	99	91.628	Canis_lupus_dingo
ENSSDUG00000004642	ddb1	100	91.316	ENSCHIG00000014969	DDB1	100	91.316	Capra_hircus
ENSSDUG00000004642	ddb1	100	90.965	ENSTSYG00000008027	DDB1	100	90.965	Carlito_syrichta
ENSSDUG00000004642	ddb1	98	91.242	ENSCAPG00000010786	DDB1	100	91.242	Cavia_aperea
ENSSDUG00000004642	ddb1	100	91.228	ENSCPOG00000009956	DDB1	100	91.228	Cavia_porcellus
ENSSDUG00000004642	ddb1	100	91.316	ENSCCAG00000035883	DDB1	100	91.316	Cebus_capucinus
ENSSDUG00000004642	ddb1	100	88.889	ENSCATG00000044495	DDB1	100	88.889	Cercocebus_atys
ENSSDUG00000004642	ddb1	100	91.316	ENSCLAG00000004126	DDB1	100	91.316	Chinchilla_lanigera
ENSSDUG00000004642	ddb1	100	91.316	ENSCSAG00000006392	DDB1	100	91.316	Chlorocebus_sabaeus
ENSSDUG00000004642	ddb1	88	84.848	ENSCHOG00000011377	DDB1	90	84.848	Choloepus_hoffmanni
ENSSDUG00000004642	ddb1	100	91.140	ENSCPBG00000017728	DDB1	100	91.140	Chrysemys_picta_bellii
ENSSDUG00000004642	ddb1	100	61.285	ENSCING00000007437	-	100	61.285	Ciona_intestinalis
ENSSDUG00000004642	ddb1	94	60.369	ENSCSAVG00000004783	-	100	60.369	Ciona_savignyi
ENSSDUG00000004642	ddb1	100	91.316	ENSCANG00000019948	DDB1	100	91.316	Colobus_angolensis_palliatus
ENSSDUG00000004642	ddb1	100	91.404	ENSCGRG00001016599	Ddb1	100	91.404	Cricetulus_griseus_chok1gshd
ENSSDUG00000004642	ddb1	100	91.404	ENSCGRG00000013427	Ddb1	100	91.404	Cricetulus_griseus_crigri
ENSSDUG00000004642	ddb1	93	98.680	ENSCSEG00000012499	ddb1	99	96.964	Cynoglossus_semilaevis
ENSSDUG00000004642	ddb1	94	97.856	ENSCVAG00000019531	ddb1	99	97.856	Cyprinodon_variegatus
ENSSDUG00000004642	ddb1	100	92.995	ENSDARG00000074431	ddb1	100	92.995	Danio_rerio
ENSSDUG00000004642	ddb1	94	91.628	ENSDNOG00000014884	DDB1	97	91.628	Dasypus_novemcinctus
ENSSDUG00000004642	ddb1	84	95.455	ENSDORG00000000127	Ddb1	100	95.455	Dipodomys_ordii
ENSSDUG00000004642	ddb1	100	60.524	FBgn0260962	pic	100	60.524	Drosophila_melanogaster
ENSSDUG00000004642	ddb1	78	30.065	FBgn0024698	Cpsf160	68	30.065	Drosophila_melanogaster
ENSSDUG00000004642	ddb1	71	95.276	ENSETEG00000001053	-	71	95.276	Echinops_telfairi
ENSSDUG00000004642	ddb1	78	84.252	ENSEBUG00000014593	ddb1	97	84.252	Eptatretus_burgeri
ENSSDUG00000004642	ddb1	100	91.404	ENSEASG00005008184	DDB1	100	91.404	Equus_asinus_asinus
ENSSDUG00000004642	ddb1	100	91.404	ENSECAG00000012136	DDB1	100	91.404	Equus_caballus
ENSSDUG00000004642	ddb1	85	87.542	ENSEEUG00000003194	DDB1	85	87.542	Erinaceus_europaeus
ENSSDUG00000004642	ddb1	100	97.544	ENSELUG00000023868	ddb1	100	97.544	Esox_lucius
ENSSDUG00000004642	ddb1	100	91.404	ENSFCAG00000029716	DDB1	100	91.404	Felis_catus
ENSSDUG00000004642	ddb1	100	90.551	ENSFALG00000011981	DDB1	100	90.551	Ficedula_albicollis
ENSSDUG00000004642	ddb1	100	91.316	ENSFDAG00000005128	DDB1	100	91.316	Fukomys_damarensis
ENSSDUG00000004642	ddb1	90	96.903	ENSFHEG00000022133	ddb1	99	96.903	Fundulus_heteroclitus
ENSSDUG00000004642	ddb1	79	98.997	ENSGMOG00000019386	ddb1	94	98.997	Gadus_morhua
ENSSDUG00000004642	ddb1	100	91.053	ENSGALG00000042333	DDB1	100	91.053	Gallus_gallus
ENSSDUG00000004642	ddb1	94	98.509	ENSGAFG00000013142	ddb1	99	98.509	Gambusia_affinis
ENSSDUG00000004642	ddb1	96	97.800	ENSGACG00000017182	ddb1	100	97.800	Gasterosteus_aculeatus
ENSSDUG00000004642	ddb1	95	90.959	ENSGAGG00000014124	DDB1	100	90.959	Gopherus_agassizii
ENSSDUG00000004642	ddb1	100	91.316	ENSGGOG00000004052	DDB1	100	91.316	Gorilla_gorilla
ENSSDUG00000004642	ddb1	100	98.860	ENSHBUG00000008873	ddb1	100	98.860	Haplochromis_burtoni
ENSSDUG00000004642	ddb1	100	91.316	ENSHGLG00000018430	DDB1	100	91.316	Heterocephalus_glaber_female
ENSSDUG00000004642	ddb1	100	90.351	ENSHGLG00100014475	DDB1	100	90.351	Heterocephalus_glaber_male
ENSSDUG00000004642	ddb1	94	98.327	ENSHCOG00000018670	ddb1	98	98.327	Hippocampus_comes
ENSSDUG00000004642	ddb1	100	96.316	ENSIPUG00000005612	DDB1	100	96.316	Ictalurus_punctatus
ENSSDUG00000004642	ddb1	100	91.316	ENSSTOG00000007552	DDB1	100	91.316	Ictidomys_tridecemlineatus
ENSSDUG00000004642	ddb1	100	91.228	ENSJJAG00000017769	Ddb1	100	91.228	Jaculus_jaculus
ENSSDUG00000004642	ddb1	94	98.509	ENSKMAG00000002315	ddb1	99	98.509	Kryptolebias_marmoratus
ENSSDUG00000004642	ddb1	84	99.376	ENSLBEG00000017065	ddb1	99	99.376	Labrus_bergylta
ENSSDUG00000004642	ddb1	100	90.718	ENSLACG00000017611	DDB1	100	90.718	Latimeria_chalumnae
ENSSDUG00000004642	ddb1	92	88.324	ENSLOCG00000000012	ddb1	100	88.324	Lepisosteus_oculatus
ENSSDUG00000004642	ddb1	100	91.228	ENSLAFG00000011513	DDB1	100	91.228	Loxodonta_africana
ENSSDUG00000004642	ddb1	100	91.316	ENSMFAG00000042035	DDB1	100	91.316	Macaca_fascicularis
ENSSDUG00000004642	ddb1	99	91.335	ENSMMUG00000002691	DDB1	100	90.789	Macaca_mulatta
ENSSDUG00000004642	ddb1	100	91.316	ENSMNEG00000031559	DDB1	100	91.316	Macaca_nemestrina
ENSSDUG00000004642	ddb1	100	91.316	ENSMLEG00000044136	DDB1	100	91.316	Mandrillus_leucophaeus
ENSSDUG00000004642	ddb1	100	99.649	ENSMAMG00000014372	ddb1	100	99.649	Mastacembelus_armatus
ENSSDUG00000004642	ddb1	100	98.772	ENSMZEG00005013835	ddb1	100	98.772	Maylandia_zebra
ENSSDUG00000004642	ddb1	94	90.223	ENSMGAG00000004990	DDB1	100	90.223	Meleagris_gallopavo
ENSSDUG00000004642	ddb1	100	91.404	ENSMAUG00000012926	Ddb1	100	91.404	Mesocricetus_auratus
ENSSDUG00000004642	ddb1	100	91.491	ENSMICG00000013703	DDB1	100	91.491	Microcebus_murinus
ENSSDUG00000004642	ddb1	100	91.316	ENSMOCG00000020499	Ddb1	100	91.316	Microtus_ochrogaster
ENSSDUG00000004642	ddb1	86	99.490	ENSMMOG00000001758	ddb1	99	99.490	Mola_mola
ENSSDUG00000004642	ddb1	100	82.526	ENSMODG00000020353	DDB1	100	82.526	Monodelphis_domestica
ENSSDUG00000004642	ddb1	100	99.474	ENSMALG00000014071	ddb1	100	99.474	Monopterus_albus
ENSSDUG00000004642	ddb1	100	91.404	MGP_CAROLIEiJ_G0022695	Ddb1	100	91.404	Mus_caroli
ENSSDUG00000004642	ddb1	100	91.491	ENSMUSG00000024740	Ddb1	100	91.491	Mus_musculus
ENSSDUG00000004642	ddb1	100	91.404	MGP_PahariEiJ_G0014189	Ddb1	100	91.404	Mus_pahari
ENSSDUG00000004642	ddb1	100	91.491	MGP_SPRETEiJ_G0023609	Ddb1	100	91.491	Mus_spretus
ENSSDUG00000004642	ddb1	100	88.333	ENSMPUG00000014200	DDB1	100	88.333	Mustela_putorius_furo
ENSSDUG00000004642	ddb1	100	91.491	ENSMLUG00000013232	DDB1	100	91.491	Myotis_lucifugus
ENSSDUG00000004642	ddb1	100	91.316	ENSNGAG00000009384	Ddb1	100	91.316	Nannospalax_galili
ENSSDUG00000004642	ddb1	100	98.947	ENSNBRG00000019581	ddb1	100	98.947	Neolamprologus_brichardi
ENSSDUG00000004642	ddb1	100	88.368	ENSNLEG00000002022	DDB1	100	88.368	Nomascus_leucogenys
ENSSDUG00000004642	ddb1	90	94.014	ENSMEUG00000001099	DDB1	93	94.014	Notamacropus_eugenii
ENSSDUG00000004642	ddb1	90	82.735	ENSOPRG00000008254	DDB1	90	82.735	Ochotona_princeps
ENSSDUG00000004642	ddb1	100	91.316	ENSODEG00000002419	DDB1	100	91.316	Octodon_degus
ENSSDUG00000004642	ddb1	100	98.947	ENSONIG00000005804	ddb1	100	98.947	Oreochromis_niloticus
ENSSDUG00000004642	ddb1	91	91.085	ENSOANG00000004897	DDB1	100	91.085	Ornithorhynchus_anatinus
ENSSDUG00000004642	ddb1	100	91.316	ENSOCUG00000001667	DDB1	100	91.316	Oryctolagus_cuniculus
ENSSDUG00000004642	ddb1	96	96.700	ENSORLG00000001399	ddb1	98	97.983	Oryzias_latipes
ENSSDUG00000004642	ddb1	96	96.609	ENSORLG00020001277	ddb1	97	96.609	Oryzias_latipes_hni
ENSSDUG00000004642	ddb1	94	97.860	ENSORLG00015002080	ddb1	99	97.860	Oryzias_latipes_hsok
ENSSDUG00000004642	ddb1	96	96.354	ENSOMEG00000006181	ddb1	99	96.354	Oryzias_melastigma
ENSSDUG00000004642	ddb1	100	91.491	ENSOGAG00000016103	DDB1	100	91.491	Otolemur_garnettii
ENSSDUG00000004642	ddb1	99	91.541	ENSOARG00000011716	DDB1	98	91.541	Ovis_aries
ENSSDUG00000004642	ddb1	100	91.316	ENSPPAG00000035343	DDB1	100	91.316	Pan_paniscus
ENSSDUG00000004642	ddb1	100	91.404	ENSPPRG00000013300	DDB1	100	91.404	Panthera_pardus
ENSSDUG00000004642	ddb1	98	91.421	ENSPTIG00000006909	DDB1	98	91.421	Panthera_tigris_altaica
ENSSDUG00000004642	ddb1	100	91.316	ENSPTRG00000003737	DDB1	100	91.316	Pan_troglodytes
ENSSDUG00000004642	ddb1	100	91.316	ENSPANG00000000242	DDB1	100	91.316	Papio_anubis
ENSSDUG00000004642	ddb1	94	96.552	ENSPKIG00000019213	ddb1	94	96.552	Paramormyrops_kingsleyae
ENSSDUG00000004642	ddb1	98	90.569	ENSPSIG00000013275	DDB1	100	90.569	Pelodiscus_sinensis
ENSSDUG00000004642	ddb1	86	99.184	ENSPMGG00000021179	ddb1	99	99.184	Periophthalmus_magnuspinnatus
ENSSDUG00000004642	ddb1	100	91.404	ENSPEMG00000012241	Ddb1	100	91.404	Peromyscus_maniculatus_bairdii
ENSSDUG00000004642	ddb1	89	86.640	ENSPMAG00000008479	ddb1	100	86.640	Petromyzon_marinus
ENSSDUG00000004642	ddb1	100	91.579	ENSPCIG00000002643	DDB1	100	91.579	Phascolarctos_cinereus
ENSSDUG00000004642	ddb1	100	98.510	ENSPFOG00000002768	ddb1	100	98.510	Poecilia_formosa
ENSSDUG00000004642	ddb1	100	98.333	ENSPLAG00000017227	ddb1	100	98.333	Poecilia_latipinna
ENSSDUG00000004642	ddb1	100	98.333	ENSPMEG00000011398	ddb1	100	98.333	Poecilia_mexicana
ENSSDUG00000004642	ddb1	94	98.605	ENSPREG00000004440	ddb1	98	98.605	Poecilia_reticulata
ENSSDUG00000004642	ddb1	100	87.086	ENSPPYG00000003193	DDB1	100	87.086	Pongo_abelii
ENSSDUG00000004642	ddb1	85	89.254	ENSPCAG00000011040	DDB1	85	89.254	Procavia_capensis
ENSSDUG00000004642	ddb1	100	90.280	ENSPCOG00000015176	DDB1	100	90.280	Propithecus_coquereli
ENSSDUG00000004642	ddb1	100	91.228	ENSPVAG00000003847	DDB1	100	91.228	Pteropus_vampyrus
ENSSDUG00000004642	ddb1	94	96.738	ENSPNAG00000006635	ddb1	97	96.738	Pygocentrus_nattereri
ENSSDUG00000004642	ddb1	100	91.491	ENSRNOG00000020715	Ddb1	100	91.491	Rattus_norvegicus
ENSSDUG00000004642	ddb1	100	91.316	ENSRBIG00000033611	DDB1	100	91.316	Rhinopithecus_bieti
ENSSDUG00000004642	ddb1	100	91.316	ENSRROG00000041407	DDB1	100	91.316	Rhinopithecus_roxellana
ENSSDUG00000004642	ddb1	100	91.404	ENSSBOG00000019775	DDB1	100	91.404	Saimiri_boliviensis_boliviensis
ENSSDUG00000004642	ddb1	94	89.065	ENSSHAG00000011600	DDB1	100	89.065	Sarcophilus_harrisii
ENSSDUG00000004642	ddb1	94	96.375	ENSSFOG00015011151	ddb1	97	96.375	Scleropages_formosus
ENSSDUG00000004642	ddb1	100	99.386	ENSSMAG00000009495	ddb1	100	99.386	Scophthalmus_maximus
ENSSDUG00000004642	ddb1	100	100.000	ENSSLDG00000015804	ddb1	100	100.000	Seriola_lalandi_dorsalis
ENSSDUG00000004642	ddb1	70	94.340	ENSSARG00000003290	-	72	94.340	Sorex_araneus
ENSSDUG00000004642	ddb1	100	91.053	ENSSPUG00000019338	DDB1	100	91.053	Sphenodon_punctatus
ENSSDUG00000004642	ddb1	94	99.349	ENSSPAG00000009888	ddb1	99	99.349	Stegastes_partitus
ENSSDUG00000004642	ddb1	100	90.439	ENSSSCG00000013094	DDB1	100	90.439	Sus_scrofa
ENSSDUG00000004642	ddb1	100	90.614	ENSTGUG00000006414	DDB1	100	90.614	Taeniopygia_guttata
ENSSDUG00000004642	ddb1	94	98.043	ENSTRUG00000016682	ddb1	98	98.043	Takifugu_rubripes
ENSSDUG00000004642	ddb1	88	93.114	ENSTNIG00000009565	ddb1	99	93.114	Tetraodon_nigroviridis
ENSSDUG00000004642	ddb1	92	85.640	ENSTTRG00000011055	DDB1	94	85.640	Tursiops_truncatus
ENSSDUG00000004642	ddb1	94	91.628	ENSUAMG00000017793	DDB1	93	91.628	Ursus_americanus
ENSSDUG00000004642	ddb1	94	91.628	ENSUMAG00000011788	DDB1	98	91.628	Ursus_maritimus
ENSSDUG00000004642	ddb1	90	86.782	ENSVPAG00000007963	DDB1	92	86.782	Vicugna_pacos
ENSSDUG00000004642	ddb1	100	91.404	ENSVVUG00000004987	DDB1	100	91.404	Vulpes_vulpes
ENSSDUG00000004642	ddb1	100	88.636	ENSXETG00000008820	ddb1	100	88.636	Xenopus_tropicalis
ENSSDUG00000004642	ddb1	86	98.673	ENSXCOG00000013956	ddb1	99	98.673	Xiphophorus_couchianus
ENSSDUG00000004642	ddb1	94	98.509	ENSXMAG00000000022	ddb1	99	98.509	Xiphophorus_maculatus