EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000004892 (Gene tree)
Gene ID: 111216828
Gene Symbol: -
Alias: -
Full Name: zinc finger protein 708-like
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 13991 bases
Position: chrBDQW01000036.1:3855414-3869404
Accession: 111216828
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000006632	zf-C2H2	PF00096.26	5.9e-52	1	8
ENSSDUP00000006632	zf-C2H2	PF00096.26	5.9e-52	2	8
ENSSDUP00000006632	zf-C2H2	PF00096.26	5.9e-52	3	8
ENSSDUP00000006632	zf-C2H2	PF00096.26	5.9e-52	4	8
ENSSDUP00000006632	zf-C2H2	PF00096.26	5.9e-52	5	8
ENSSDUP00000006632	zf-C2H2	PF00096.26	5.9e-52	6	8
ENSSDUP00000006632	zf-C2H2	PF00096.26	5.9e-52	7	8
ENSSDUP00000006632	zf-C2H2	PF00096.26	5.9e-52	8	8
ENSSDUP00000006658	zf-C2H2	PF00096.26	2e-16	1	3
ENSSDUP00000006658	zf-C2H2	PF00096.26	2e-16	2	3
ENSSDUP00000006658	zf-C2H2	PF00096.26	2e-16	3	3
ENSSDUP00000006632	zf-met	PF12874.7	4e-13	1	3
ENSSDUP00000006632	zf-met	PF12874.7	4e-13	2	3
ENSSDUP00000006632	zf-met	PF12874.7	4e-13	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000006789	-	573	-	ENSSDUP00000006658	190 (aa)	-	-
ENSSDUT00000006763	-	3234	XM_022738443	ENSSDUP00000006632	809 (aa)	XP_022594164	UPI000BBEB609

Gene Model

Click here to download ENSSDUG00000004892's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000004892's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000004892	-	87	33.533	ENSSDUG00000006463	-	97	35.294
ENSSDUG00000004892	-	87	36.364	ENSSDUG00000020805	-	94	41.629
ENSSDUG00000004892	-	86	34.545	ENSSDUG00000000705	-	65	33.434
ENSSDUG00000004892	-	92	32.768	ENSSDUG00000016450	-	64	31.447
ENSSDUG00000004892	-	87	34.211	ENSSDUG00000011604	gfi1b	51	40.506
ENSSDUG00000004892	-	95	36.196	ENSSDUG00000009577	-	66	40.377
ENSSDUG00000004892	-	95	36.220	ENSSDUG00000002195	-	85	52.941
ENSSDUG00000004892	-	98	35.252	ENSSDUG00000015159	-	93	38.021
ENSSDUG00000004892	-	91	35.593	ENSSDUG00000009553	-	55	39.634
ENSSDUG00000004892	-	98	37.681	ENSSDUG00000020595	-	90	45.062
ENSSDUG00000004892	-	94	33.742	ENSSDUG00000016734	-	68	36.071
ENSSDUG00000004892	-	50	44.318	ENSSDUG00000008682	-	74	44.318
ENSSDUG00000004892	-	58	30.491	ENSSDUG00000010305	-	60	30.714
ENSSDUG00000004892	-	94	33.728	ENSSDUG00000015254	-	89	43.548
ENSSDUG00000004892	-	77	30.714	ENSSDUG00000018060	snai2	82	35.252
ENSSDUG00000004892	-	75	44.444	ENSSDUG00000000889	-	75	33.523
ENSSDUG00000004892	-	88	34.454	ENSSDUG00000020788	-	74	41.921
ENSSDUG00000004892	-	95	36.975	ENSSDUG00000015182	-	79	40.896
ENSSDUG00000004892	-	98	43.548	ENSSDUG00000011170	znf236	62	37.241
ENSSDUG00000004892	-	78	35.135	ENSSDUG00000004867	-	96	47.059
ENSSDUG00000004892	-	88	37.662	ENSSDUG00000009563	-	70	41.216
ENSSDUG00000004892	-	96	33.708	ENSSDUG00000001918	znf366	52	31.525
ENSSDUG00000004892	-	94	35.065	ENSSDUG00000004089	-	97	39.394
ENSSDUG00000004892	-	58	34.965	ENSSDUG00000017250	-	62	35.032
ENSSDUG00000004892	-	88	35.714	ENSSDUG00000002488	-	70	35.602
ENSSDUG00000004892	-	98	39.560	ENSSDUG00000009534	-	72	40.000
ENSSDUG00000004892	-	88	31.250	ENSSDUG00000000695	-	75	35.395
ENSSDUG00000004892	-	88	35.294	ENSSDUG00000004835	-	72	36.052
ENSSDUG00000004892	-	83	36.134	ENSSDUG00000023765	-	75	45.033
ENSSDUG00000004892	-	98	40.506	ENSSDUG00000023764	-	91	46.000
ENSSDUG00000004892	-	98	46.032	ENSSDUG00000022412	znf648	58	36.111
ENSSDUG00000004892	-	87	40.789	ENSSDUG00000006808	-	75	44.379
ENSSDUG00000004892	-	96	33.143	ENSSDUG00000000799	-	70	33.739
ENSSDUG00000004892	-	75	35.652	ENSSDUG00000001637	scrt2	50	36.364
ENSSDUG00000004892	-	89	40.000	ENSSDUG00000005323	-	95	40.000
ENSSDUG00000004892	-	97	34.437	ENSSDUG00000020397	prdm5	82	35.906
ENSSDUG00000004892	-	95	35.948	ENSSDUG00000015204	-	99	39.527
ENSSDUG00000004892	-	89	42.169	ENSSDUG00000001263	-	87	42.169
ENSSDUG00000004892	-	87	34.659	ENSSDUG00000000909	-	50	41.549
ENSSDUG00000004892	-	88	40.000	ENSSDUG00000009421	-	92	40.625
ENSSDUG00000004892	-	95	38.017	ENSSDUG00000006426	-	97	40.183
ENSSDUG00000004892	-	58	50.000	ENSSDUG00000000748	sall1b	62	50.000
ENSSDUG00000004892	-	95	38.158	ENSSDUG00000008943	-	91	41.791
ENSSDUG00000004892	-	77	37.017	ENSSDUG00000008329	-	78	43.902
ENSSDUG00000004892	-	98	47.619	ENSSDUG00000015191	-	98	41.038
ENSSDUG00000004892	-	75	33.913	ENSSDUG00000013215	-	51	35.606
ENSSDUG00000004892	-	63	34.783	ENSSDUG00000002675	znf646	87	34.783
ENSSDUG00000004892	-	88	31.034	ENSSDUG00000011244	-	80	39.409
ENSSDUG00000004892	-	75	31.579	ENSSDUG00000007752	scrt1b	56	36.620
ENSSDUG00000004892	-	95	41.096	ENSSDUG00000015013	-	60	41.096
ENSSDUG00000004892	-	88	36.066	ENSSDUG00000020810	-	79	39.763
ENSSDUG00000004892	-	77	38.806	ENSSDUG00000012926	-	66	38.129
ENSSDUG00000004892	-	97	31.788	ENSSDUG00000018835	PRDM15	51	33.083
ENSSDUG00000004892	-	89	37.778	ENSSDUG00000015622	-	74	40.110
ENSSDUG00000004892	-	83	35.795	ENSSDUG00000022819	hic2	69	35.795
ENSSDUG00000004892	-	56	32.258	ENSSDUG00000013335	-	90	33.088
ENSSDUG00000004892	-	88	37.013	ENSSDUG00000004650	-	99	43.590
ENSSDUG00000004892	-	96	41.935	ENSSDUG00000009601	-	89	44.361
ENSSDUG00000004892	-	95	36.364	ENSSDUG00000013904	-	67	45.802
ENSSDUG00000004892	-	87	32.919	ENSSDUG00000022914	-	56	39.024
ENSSDUG00000004892	-	95	41.791	ENSSDUG00000005401	-	99	39.033
ENSSDUG00000004892	-	85	35.514	ENSSDUG00000014574	znf526	53	37.576
ENSSDUG00000004892	-	92	36.242	ENSSDUG00000003003	znf319b	81	33.667
ENSSDUG00000004892	-	97	46.711	ENSSDUG00000002174	-	79	39.966
ENSSDUG00000004892	-	88	41.525	ENSSDUG00000009439	-	92	40.789
ENSSDUG00000004892	-	92	33.099	ENSSDUG00000006740	-	74	33.577
ENSSDUG00000004892	-	97	35.714	ENSSDUG00000019932	ZNF319	81	34.805
ENSSDUG00000004892	-	95	45.763	ENSSDUG00000000946	-	99	45.349
ENSSDUG00000004892	-	88	46.774	ENSSDUG00000007336	-	84	46.774
ENSSDUG00000004892	-	97	36.508	ENSSDUG00000000786	-	96	50.725

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000004892	-	100	68.473	ENSAPOG00000001563	-	99	72.814	Acanthochromis_polyacanthus
ENSSDUG00000004892	-	88	57.714	ENSACIG00000015411	-	88	70.341	Amphilophus_citrinellus
ENSSDUG00000004892	-	96	62.545	ENSAOCG00000013505	-	99	63.024	Amphiprion_ocellaris
ENSSDUG00000004892	-	63	84.746	ENSAOCG00000013589	-	98	84.746	Amphiprion_ocellaris
ENSSDUG00000004892	-	63	83.784	ENSAPEG00000022774	-	91	83.784	Amphiprion_percula
ENSSDUG00000004892	-	96	61.525	ENSAPEG00000022756	-	99	62.000	Amphiprion_percula
ENSSDUG00000004892	-	96	64.416	ENSATEG00000019284	-	93	63.869	Anabas_testudineus
ENSSDUG00000004892	-	58	90.476	ENSATEG00000019261	-	80	90.116	Anabas_testudineus
ENSSDUG00000004892	-	59	86.139	ENSACLG00000008606	-	91	86.139	Astatotilapia_calliptera
ENSSDUG00000004892	-	62	81.500	ENSACLG00000008624	-	95	81.500	Astatotilapia_calliptera
ENSSDUG00000004892	-	100	64.338	ENSCSEG00000008903	-	92	74.397	Cynoglossus_semilaevis
ENSSDUG00000004892	-	88	56.571	ENSCVAG00000016534	-	94	55.809	Cyprinodon_variegatus
ENSSDUG00000004892	-	97	38.251	ENSGMOG00000000494	-	98	64.507	Gadus_morhua
ENSSDUG00000004892	-	99	59.431	ENSGAFG00000002659	-	99	59.834	Gambusia_affinis
ENSSDUG00000004892	-	96	58.857	ENSGACG00000001377	-	99	81.818	Gasterosteus_aculeatus
ENSSDUG00000004892	-	60	74.502	ENSHBUG00000008502	-	90	74.502	Haplochromis_burtoni
ENSSDUG00000004892	-	99	62.086	ENSHCOG00000000511	-	96	72.289	Hippocampus_comes
ENSSDUG00000004892	-	96	59.440	ENSLBEG00000018509	-	92	79.006	Labrus_bergylta
ENSSDUG00000004892	-	100	79.344	ENSMAMG00000018137	-	100	79.344	Mastacembelus_armatus
ENSSDUG00000004892	-	60	75.510	ENSMZEG00005002583	-	91	75.510	Maylandia_zebra
ENSSDUG00000004892	-	87	58.730	ENSMMOG00000009733	-	96	76.389	Mola_mola
ENSSDUG00000004892	-	95	52.381	ENSMALG00000019991	-	96	51.274	Monopterus_albus
ENSSDUG00000004892	-	97	57.714	ENSNBRG00000008223	-	82	89.726	Neolamprologus_brichardi
ENSSDUG00000004892	-	68	87.076	ENSONIG00000017233	-	100	87.076	Oreochromis_niloticus
ENSSDUG00000004892	-	72	76.151	ENSOMEG00000016463	-	89	74.905	Oryzias_melastigma
ENSSDUG00000004892	-	82	58.750	ENSPMGG00000002384	-	88	50.718	Periophthalmus_magnuspinnatus
ENSSDUG00000004892	-	95	63.212	ENSPFOG00000006287	-	100	64.005	Poecilia_formosa
ENSSDUG00000004892	-	96	53.030	ENSPLAG00000003412	-	97	53.598	Poecilia_latipinna
ENSSDUG00000004892	-	99	61.829	ENSPMEG00000005897	-	99	62.149	Poecilia_mexicana
ENSSDUG00000004892	-	96	55.429	ENSPREG00000021246	-	99	75.246	Poecilia_reticulata
ENSSDUG00000004892	-	68	88.333	ENSPNYG00000023088	-	90	74.502	Pundamilia_nyererei
ENSSDUG00000004892	-	96	68.000	ENSSLDG00000005670	-	92	94.872	Seriola_lalandi_dorsalis
ENSSDUG00000004892	-	85	79.452	ENSSPAG00000022219	-	86	79.452	Stegastes_partitus
ENSSDUG00000004892	-	97	58.286	ENSTNIG00000011188	-	98	81.316	Tetraodon_nigroviridis
ENSSDUG00000004892	-	58	75.207	ENSXCOG00000012645	-	51	75.207	Xiphophorus_couchianus
ENSSDUG00000004892	-	95	63.777	ENSXMAG00000000866	-	84	63.648	Xiphophorus_maculatus