EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000005024 (Gene tree)
Gene ID: 111224530
Gene Symbol: cpsf6
Alias: wu:fa22f12|zgc:85819
Full Name: cleavage and polyadenylation specific factor 6
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 18456 bases
Position: chrBDQW01000138.1:8589632-8608087
Accession: 111224530
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000006854	RRM_1	PF00076.22	3.9e-07	1	1
ENSSDUP00000006831	RRM_1	PF00076.22	4.2e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000006986	-	2170	XM_022749062	ENSSDUP00000006854	549 (aa)	XP_022604783	UPI000BBE73E2
ENSSDUT00000006963	-	6139	XM_022749060	ENSSDUP00000006831	585 (aa)	XP_022604781	UPI000BBE1BE2

Gene Model

Click here to download ENSSDUG00000005024's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000005024's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000005024	cpsf6	66	73.750	ENSG00000149532	CPSF7	100	50.000	Homo_sapiens
ENSSDUG00000005024	cpsf6	94	82.409	ENSG00000111605	CPSF6	88	81.915	Homo_sapiens
ENSSDUG00000005024	cpsf6	100	93.206	ENSACIG00000018413	cpsf6	100	93.206	Amphilophus_citrinellus
ENSSDUG00000005024	cpsf6	100	98.364	ENSAOCG00000017865	cpsf6	100	98.364	Amphiprion_ocellaris
ENSSDUG00000005024	cpsf6	64	47.739	ENSANAG00000024635	CPSF7	69	50.838	Aotus_nancymaae
ENSSDUG00000005024	cpsf6	100	96.758	ENSACLG00000026325	cpsf6	100	96.758	Astatotilapia_calliptera
ENSSDUG00000005024	cpsf6	95	81.154	ENSAMXG00000016745	CPSF6	75	91.566	Astyanax_mexicanus
ENSSDUG00000005024	cpsf6	65	52.850	ENSBTAG00000015263	CPSF7	71	56.069	Bos_taurus
ENSSDUG00000005024	cpsf6	73	59.055	ENSCJAG00000019282	CPSF7	73	66.667	Callithrix_jacchus
ENSSDUG00000005024	cpsf6	65	52.850	ENSCAFG00000016152	CPSF7	71	56.647	Canis_familiaris
ENSSDUG00000005024	cpsf6	91	81.944	ENSCAFG00000000424	CPSF6	92	82.166	Canis_familiaris
ENSSDUG00000005024	cpsf6	65	52.850	ENSCAFG00020012753	CPSF7	71	56.647	Canis_lupus_dingo
ENSSDUG00000005024	cpsf6	65	52.850	ENSCHIG00000014655	CPSF7	71	56.069	Capra_hircus
ENSSDUG00000005024	cpsf6	65	52.850	ENSTSYG00000010138	-	71	56.647	Carlito_syrichta
ENSSDUG00000005024	cpsf6	91	81.909	ENSTSYG00000008591	CPSF6	73	83.832	Carlito_syrichta
ENSSDUG00000005024	cpsf6	55	58.741	ENSCAPG00000006384	CPSF7	70	56.647	Cavia_aperea
ENSSDUG00000005024	cpsf6	58	58.741	ENSCPOG00000009980	CPSF7	71	56.647	Cavia_porcellus
ENSSDUG00000005024	cpsf6	65	52.332	ENSCCAG00000032367	CPSF7	71	56.069	Cebus_capucinus
ENSSDUG00000005024	cpsf6	68	52.332	ENSCATG00000042801	CPSF7	73	56.069	Cercocebus_atys
ENSSDUG00000005024	cpsf6	94	82.409	ENSCATG00000039288	CPSF6	90	85.057	Cercocebus_atys
ENSSDUG00000005024	cpsf6	58	58.741	ENSCLAG00000003174	CPSF7	71	56.069	Chinchilla_lanigera
ENSSDUG00000005024	cpsf6	68	52.332	ENSCSAG00000006414	CPSF7	73	56.069	Chlorocebus_sabaeus
ENSSDUG00000005024	cpsf6	91	81.909	ENSCANG00000037294	CPSF6	88	83.137	Colobus_angolensis_palliatus
ENSSDUG00000005024	cpsf6	65	53.368	ENSCGRG00001020382	Cpsf7	71	57.225	Cricetulus_griseus_chok1gshd
ENSSDUG00000005024	cpsf6	95	41.899	ENSCGRG00000017954	Cpsf7	73	57.225	Cricetulus_griseus_crigri
ENSSDUG00000005024	cpsf6	100	97.091	ENSCSEG00000008967	cpsf6	100	97.091	Cynoglossus_semilaevis
ENSSDUG00000005024	cpsf6	52	40.206	ENSCSEG00000001956	CPSF7	75	40.206	Cynoglossus_semilaevis
ENSSDUG00000005024	cpsf6	95	90.631	ENSCVAG00000014857	cpsf6	95	86.667	Cyprinodon_variegatus
ENSSDUG00000005024	cpsf6	70	35.586	ENSCVAG00000007392	CPSF7	81	39.153	Cyprinodon_variegatus
ENSSDUG00000005024	cpsf6	74	59.843	ENSDNOG00000018517	CPSF7	73	67.500	Dasypus_novemcinctus
ENSSDUG00000005024	cpsf6	65	50.259	ENSETEG00000003765	CPSF7	71	56.647	Echinops_telfairi
ENSSDUG00000005024	cpsf6	69	82.488	ENSETEG00000002097	CPSF6	74	84.865	Echinops_telfairi
ENSSDUG00000005024	cpsf6	65	52.850	ENSEASG00005008196	CPSF7	71	56.647	Equus_asinus_asinus
ENSSDUG00000005024	cpsf6	67	75.000	ENSECAG00000018521	CPSF7	74	67.500	Equus_caballus
ENSSDUG00000005024	cpsf6	74	59.843	ENSFCAG00000013677	CPSF7	74	67.500	Felis_catus
ENSSDUG00000005024	cpsf6	90	45.798	ENSFALG00000011927	CPSF7	76	54.335	Ficedula_albicollis
ENSSDUG00000005024	cpsf6	95	40.481	ENSFDAG00000003919	CPSF7	71	56.647	Fukomys_damarensis
ENSSDUG00000005024	cpsf6	95	84.563	ENSFHEG00000019693	cpsf6	95	86.106	Fundulus_heteroclitus
ENSSDUG00000005024	cpsf6	59	98.675	ENSGMOG00000012951	cpsf6	59	98.675	Gadus_morhua
ENSSDUG00000005024	cpsf6	63	52.514	ENSGALG00000040962	CPSF7	63	56.647	Gallus_gallus
ENSSDUG00000005024	cpsf6	100	95.993	ENSGACG00000019685	cpsf6	100	95.993	Gasterosteus_aculeatus
ENSSDUG00000005024	cpsf6	94	83.174	ENSGAGG00000010228	CPSF6	54	74.386	Gopherus_agassizii
ENSSDUG00000005024	cpsf6	52	80.634	ENSGGOG00000008211	CPSF6	90	85.057	Gorilla_gorilla
ENSSDUG00000005024	cpsf6	100	97.273	ENSHBUG00000005998	cpsf6	100	97.273	Haplochromis_burtoni
ENSSDUG00000005024	cpsf6	88	38.374	ENSHGLG00000019090	-	73	56.647	Heterocephalus_glaber_female
ENSSDUG00000005024	cpsf6	90	53.368	ENSHGLG00100013933	-	73	56.647	Heterocephalus_glaber_male
ENSSDUG00000005024	cpsf6	95	86.607	ENSHCOG00000014555	cpsf6	95	85.510	Hippocampus_comes
ENSSDUG00000005024	cpsf6	65	52.850	ENSSTOG00000007708	CPSF7	71	56.647	Ictidomys_tridecemlineatus
ENSSDUG00000005024	cpsf6	68	52.850	ENSJJAG00000019390	Cpsf7	73	56.069	Jaculus_jaculus
ENSSDUG00000005024	cpsf6	95	93.333	ENSKMAG00000014794	cpsf6	95	92.613	Kryptolebias_marmoratus
ENSSDUG00000005024	cpsf6	57	40.278	ENSLBEG00000000947	CPSF7	72	38.728	Labrus_bergylta
ENSSDUG00000005024	cpsf6	100	96.796	ENSLBEG00000015762	cpsf6	100	96.796	Labrus_bergylta
ENSSDUG00000005024	cpsf6	62	44.937	ENSLACG00000005542	CPSF7	70	44.304	Latimeria_chalumnae
ENSSDUG00000005024	cpsf6	66	90.419	ENSLOCG00000016190	cpsf6	60	91.566	Lepisosteus_oculatus
ENSSDUG00000005024	cpsf6	65	53.368	ENSLAFG00000032084	CPSF7	71	57.225	Loxodonta_africana
ENSSDUG00000005024	cpsf6	94	82.409	ENSMFAG00000045318	CPSF6	90	85.057	Macaca_fascicularis
ENSSDUG00000005024	cpsf6	65	52.332	ENSMFAG00000001401	CPSF7	71	56.069	Macaca_fascicularis
ENSSDUG00000005024	cpsf6	68	52.332	ENSMMUG00000015280	CPSF7	73	56.069	Macaca_mulatta
ENSSDUG00000005024	cpsf6	94	82.409	ENSMNEG00000036311	CPSF6	90	85.057	Macaca_nemestrina
ENSSDUG00000005024	cpsf6	68	52.332	ENSMNEG00000029585	CPSF7	73	56.069	Macaca_nemestrina
ENSSDUG00000005024	cpsf6	65	52.332	ENSMLEG00000031269	CPSF7	69	56.069	Mandrillus_leucophaeus
ENSSDUG00000005024	cpsf6	91	81.909	ENSMLEG00000003957	CPSF6	88	83.137	Mandrillus_leucophaeus
ENSSDUG00000005024	cpsf6	100	98.725	ENSMAMG00000010385	cpsf6	100	98.725	Mastacembelus_armatus
ENSSDUG00000005024	cpsf6	100	97.273	ENSMZEG00005007975	cpsf6	100	97.273	Maylandia_zebra
ENSSDUG00000005024	cpsf6	95	43.761	ENSMGAG00000004876	CPSF7	62	58.683	Meleagris_gallopavo
ENSSDUG00000005024	cpsf6	65	52.850	ENSMAUG00000013020	Cpsf7	71	56.647	Mesocricetus_auratus
ENSSDUG00000005024	cpsf6	65	52.850	ENSMICG00000013788	CPSF7	71	56.647	Microcebus_murinus
ENSSDUG00000005024	cpsf6	52	80.634	ENSMICG00000007385	-	90	85.057	Microcebus_murinus
ENSSDUG00000005024	cpsf6	65	52.850	ENSMOCG00000000072	Cpsf7	71	56.647	Microtus_ochrogaster
ENSSDUG00000005024	cpsf6	65	51.531	ENSMODG00000020364	CPSF7	72	56.818	Monodelphis_domestica
ENSSDUG00000005024	cpsf6	82	98.661	ENSMALG00000014908	cpsf6	89	98.661	Monopterus_albus
ENSSDUG00000005024	cpsf6	65	52.850	MGP_CAROLIEiJ_G0022690	Cpsf7	71	56.647	Mus_caroli
ENSSDUG00000005024	cpsf6	65	52.850	ENSMUSG00000034820	Cpsf7	71	56.647	Mus_musculus
ENSSDUG00000005024	cpsf6	65	52.850	MGP_PahariEiJ_G0014184	Cpsf7	71	56.647	Mus_pahari
ENSSDUG00000005024	cpsf6	65	52.850	MGP_SPRETEiJ_G0023604	Cpsf7	71	56.647	Mus_spretus
ENSSDUG00000005024	cpsf6	64	51.813	ENSMPUG00000014163	CPSF7	68	55.491	Mustela_putorius_furo
ENSSDUG00000005024	cpsf6	63	89.130	ENSMLUG00000028728	-	85	80.541	Myotis_lucifugus
ENSSDUG00000005024	cpsf6	69	79.070	ENSMLUG00000023960	-	74	77.841	Myotis_lucifugus
ENSSDUG00000005024	cpsf6	68	52.850	ENSMLUG00000013278	CPSF7	73	56.647	Myotis_lucifugus
ENSSDUG00000005024	cpsf6	65	52.850	ENSNGAG00000005031	Cpsf7	71	56.647	Nannospalax_galili
ENSSDUG00000005024	cpsf6	100	97.636	ENSNBRG00000004089	cpsf6	100	97.636	Neolamprologus_brichardi
ENSSDUG00000005024	cpsf6	65	52.332	ENSNLEG00000002529	CPSF7	65	56.069	Nomascus_leucogenys
ENSSDUG00000005024	cpsf6	94	82.409	ENSNLEG00000003798	CPSF6	90	85.057	Nomascus_leucogenys
ENSSDUG00000005024	cpsf6	65	53.886	ENSMEUG00000002261	CPSF7	71	57.803	Notamacropus_eugenii
ENSSDUG00000005024	cpsf6	65	50.510	ENSODEG00000002610	CPSF7	71	56.250	Octodon_degus
ENSSDUG00000005024	cpsf6	62	87.952	ENSODEG00000004418	-	78	89.157	Octodon_degus
ENSSDUG00000005024	cpsf6	100	96.915	ENSONIG00000011702	cpsf6	100	96.915	Oreochromis_niloticus
ENSSDUG00000005024	cpsf6	95	42.726	ENSOCUG00000024726	CPSF7	71	56.069	Oryctolagus_cuniculus
ENSSDUG00000005024	cpsf6	68	35.345	ENSORLG00000006495	CPSF7	72	38.857	Oryzias_latipes
ENSSDUG00000005024	cpsf6	68	35.345	ENSORLG00020012657	CPSF7	72	38.857	Oryzias_latipes_hni
ENSSDUG00000005024	cpsf6	68	35.345	ENSORLG00015011091	CPSF7	71	36.723	Oryzias_latipes_hsok
ENSSDUG00000005024	cpsf6	68	36.207	ENSOMEG00000000539	CPSF7	72	39.884	Oryzias_melastigma
ENSSDUG00000005024	cpsf6	65	52.850	ENSOGAG00000027958	CPSF7	66	56.647	Otolemur_garnettii
ENSSDUG00000005024	cpsf6	95	41.166	ENSOARG00000012937	CPSF7	64	56.069	Ovis_aries
ENSSDUG00000005024	cpsf6	65	52.332	ENSPPAG00000028232	CPSF7	69	56.069	Pan_paniscus
ENSSDUG00000005024	cpsf6	95	39.889	ENSPPRG00000008538	CPSF7	71	56.647	Panthera_pardus
ENSSDUG00000005024	cpsf6	85	81.529	ENSPTIG00000004079	CPSF6	51	83.858	Panthera_tigris_altaica
ENSSDUG00000005024	cpsf6	65	52.850	ENSPTIG00000021699	CPSF7	71	56.647	Panthera_tigris_altaica
ENSSDUG00000005024	cpsf6	65	52.332	ENSPTRG00000003742	CPSF7	71	56.069	Pan_troglodytes
ENSSDUG00000005024	cpsf6	52	80.634	ENSPTRG00000005205	CPSF6	90	85.057	Pan_troglodytes
ENSSDUG00000005024	cpsf6	94	82.409	ENSPANG00000011641	CPSF6	90	85.057	Papio_anubis
ENSSDUG00000005024	cpsf6	65	52.332	ENSPANG00000006037	CPSF7	67	56.069	Papio_anubis
ENSSDUG00000005024	cpsf6	52	91.228	ENSPKIG00000022613	CPSF6	52	91.228	Paramormyrops_kingsleyae
ENSSDUG00000005024	cpsf6	64	46.067	ENSPKIG00000018054	CPSF7	65	45.342	Paramormyrops_kingsleyae
ENSSDUG00000005024	cpsf6	68	52.850	ENSPEMG00000012648	Cpsf7	73	56.647	Peromyscus_maniculatus_bairdii
ENSSDUG00000005024	cpsf6	50	42.955	ENSPMAG00000008077	-	63	50.857	Petromyzon_marinus
ENSSDUG00000005024	cpsf6	65	51.531	ENSPCIG00000002551	CPSF7	84	53.631	Phascolarctos_cinereus
ENSSDUG00000005024	cpsf6	87	95.312	ENSPFOG00000006990	cpsf6	57	90.672	Poecilia_formosa
ENSSDUG00000005024	cpsf6	95	92.252	ENSPLAG00000005715	cpsf6	95	88.288	Poecilia_latipinna
ENSSDUG00000005024	cpsf6	95	92.252	ENSPMEG00000001353	cpsf6	95	88.288	Poecilia_mexicana
ENSSDUG00000005024	cpsf6	95	92.252	ENSPREG00000004417	cpsf6	95	88.288	Poecilia_reticulata
ENSSDUG00000005024	cpsf6	65	52.332	ENSPPYG00000003188	CPSF7	71	56.069	Pongo_abelii
ENSSDUG00000005024	cpsf6	65	52.850	ENSPCOG00000011976	CPSF7	71	56.647	Propithecus_coquereli
ENSSDUG00000005024	cpsf6	65	52.850	ENSPVAG00000010675	CPSF7	71	56.647	Pteropus_vampyrus
ENSSDUG00000005024	cpsf6	100	96.928	ENSPNYG00000020315	cpsf6	100	96.928	Pundamilia_nyererei
ENSSDUG00000005024	cpsf6	59	46.104	ENSPNAG00000015073	CPSF7	67	45.455	Pygocentrus_nattereri
ENSSDUG00000005024	cpsf6	68	52.850	ENSRNOG00000020668	Cpsf7	73	56.647	Rattus_norvegicus
ENSSDUG00000005024	cpsf6	52	80.634	ENSRBIG00000042827	CPSF6	90	85.057	Rhinopithecus_bieti
ENSSDUG00000005024	cpsf6	73	59.055	ENSRBIG00000031429	CPSF7	74	66.667	Rhinopithecus_bieti
ENSSDUG00000005024	cpsf6	65	52.332	ENSRROG00000045009	CPSF7	71	56.069	Rhinopithecus_roxellana
ENSSDUG00000005024	cpsf6	94	82.409	ENSRROG00000042758	CPSF6	90	85.057	Rhinopithecus_roxellana
ENSSDUG00000005024	cpsf6	65	52.332	ENSSBOG00000018431	CPSF7	71	56.069	Saimiri_boliviensis_boliviensis
ENSSDUG00000005024	cpsf6	85	81.529	ENSSBOG00000010652	CPSF6	89	83.137	Saimiri_boliviensis_boliviensis
ENSSDUG00000005024	cpsf6	62	53.886	ENSSHAG00000011964	CPSF7	68	57.803	Sarcophilus_harrisii
ENSSDUG00000005024	cpsf6	62	42.222	ENSSFOG00015010288	cpsf7	70	44.156	Scleropages_formosus
ENSSDUG00000005024	cpsf6	100	97.607	ENSSMAG00000000471	cpsf6	100	97.607	Scophthalmus_maximus
ENSSDUG00000005024	cpsf6	100	100.000	ENSSLDG00000009042	cpsf6	100	100.000	Seriola_lalandi_dorsalis
ENSSDUG00000005024	cpsf6	85	85.827	ENSSARG00000006743	CPSF6	74	87.352	Sorex_araneus
ENSSDUG00000005024	cpsf6	65	53.333	ENSSPUG00000019344	CPSF7	73	57.803	Sphenodon_punctatus
ENSSDUG00000005024	cpsf6	100	98.727	ENSSPAG00000013906	cpsf6	100	98.727	Stegastes_partitus
ENSSDUG00000005024	cpsf6	74	59.843	ENSSSCG00000013083	CPSF7	73	67.500	Sus_scrofa
ENSSDUG00000005024	cpsf6	63	49.438	ENSTGUG00000006513	CPSF7	74	53.763	Taeniopygia_guttata
ENSSDUG00000005024	cpsf6	94	92.857	ENSTRUG00000016461	cpsf6	94	91.313	Takifugu_rubripes
ENSSDUG00000005024	cpsf6	94	93.436	ENSTNIG00000007576	cpsf6	94	93.436	Tetraodon_nigroviridis
ENSSDUG00000005024	cpsf6	62	52.332	ENSTTRG00000011085	CPSF7	70	56.647	Tursiops_truncatus
ENSSDUG00000005024	cpsf6	65	52.850	ENSUAMG00000017809	CPSF7	71	56.647	Ursus_americanus
ENSSDUG00000005024	cpsf6	85	81.529	ENSUAMG00000023492	CPSF6	51	83.858	Ursus_americanus
ENSSDUG00000005024	cpsf6	85	81.529	ENSUMAG00000020779	CPSF6	65	90.909	Ursus_maritimus
ENSSDUG00000005024	cpsf6	68	52.850	ENSUMAG00000011825	CPSF7	73	56.647	Ursus_maritimus
ENSSDUG00000005024	cpsf6	74	59.843	ENSVVUG00000004939	CPSF7	73	67.500	Vulpes_vulpes
ENSSDUG00000005024	cpsf6	97	41.912	ENSXETG00000006715	cpsf7	65	51.176	Xenopus_tropicalis
ENSSDUG00000005024	cpsf6	94	92.678	ENSXCOG00000013423	cpsf6	50	91.575	Xiphophorus_couchianus
ENSSDUG00000005024	cpsf6	95	92.072	ENSXMAG00000003459	cpsf6	95	88.108	Xiphophorus_maculatus