EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000005148 (Gene tree)
Gene ID: 111218341
Gene Symbol: rab20
Alias: fb01f02|wu:fb01f02|wu:fj82g08|zgc:64047
Full Name: RAB20%2C member RAS oncogene family
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 7988 bases
Position: chrBDQW01000052.1:14652577-14660564
Accession: 111218341
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000006991	MMR_HSR1	PF01926.23	0.00012	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000007124	-	4373	XM_022740601	ENSSDUP00000006991	263 (aa)	XP_022596322	UPI000BBE09EF

Gene Model

Click here to download ENSSDUG00000005148's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000005148's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000005148	rab20	50	32.867	ENSSDUG00000006618	RAB17	60	32.867

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000005148	rab20	98	90.272	ENSATEG00000011117	rab20	100	90.272	Anabas_testudineus
ENSSDUG00000005148	rab20	98	62.257	ENSAPLG00000011744	RAB20	99	62.257	Anas_platyrhynchos
ENSSDUG00000005148	rab20	97	58.984	ENSACAG00000014045	RAB20	99	58.984	Anolis_carolinensis
ENSSDUG00000005148	rab20	98	68.217	ENSAMXG00000003504	rab20	99	69.380	Astyanax_mexicanus
ENSSDUG00000005148	rab20	97	64.706	ENSCPBG00000005866	RAB20	99	64.706	Chrysemys_picta_bellii
ENSSDUG00000005148	rab20	98	80.545	ENSCSEG00000011160	rab20	100	80.545	Cynoglossus_semilaevis
ENSSDUG00000005148	rab20	100	73.764	ENSDARG00000005049	rab20	99	73.764	Danio_rerio
ENSSDUG00000005148	rab20	99	79.468	ENSELUG00000004092	rab20	100	79.468	Esox_lucius
ENSSDUG00000005148	rab20	98	61.868	ENSFALG00000004409	RAB20	99	61.868	Ficedula_albicollis
ENSSDUG00000005148	rab20	98	86.873	ENSGACG00000003527	rab20	100	86.873	Gasterosteus_aculeatus
ENSSDUG00000005148	rab20	100	81.749	ENSHCOG00000013468	rab20	100	81.749	Hippocampus_comes
ENSSDUG00000005148	rab20	98	70.155	ENSIPUG00000018288	RAB20	97	70.155	Ictalurus_punctatus
ENSSDUG00000005148	rab20	98	70.155	ENSIPUG00000000432	RAB20	97	70.155	Ictalurus_punctatus
ENSSDUG00000005148	rab20	97	62.891	ENSLACG00000011001	RAB20	99	62.891	Latimeria_chalumnae
ENSSDUG00000005148	rab20	100	93.156	ENSMAMG00000015214	rab20	100	93.156	Mastacembelus_armatus
ENSSDUG00000005148	rab20	98	82.101	ENSMMOG00000020022	rab20	100	82.101	Mola_mola
ENSSDUG00000005148	rab20	98	59.533	ENSMEUG00000009442	RAB20	99	59.533	Notamacropus_eugenii
ENSSDUG00000005148	rab20	84	48.052	ENSPMAG00000004439	rab20	98	48.485	Petromyzon_marinus
ENSSDUG00000005148	rab20	98	70.817	ENSPNAG00000008867	rab20	99	71.595	Pygocentrus_nattereri
ENSSDUG00000005148	rab20	98	89.883	ENSSMAG00000018818	rab20	100	89.883	Scophthalmus_maximus
ENSSDUG00000005148	rab20	98	63.035	ENSTGUG00000008797	RAB20	99	63.035	Taeniopygia_guttata
ENSSDUG00000005148	rab20	100	82.510	ENSTRUG00000022951	rab20	100	82.510	Takifugu_rubripes
ENSSDUG00000005148	rab20	93	76.639	ENSTNIG00000013920	rab20	100	76.654	Tetraodon_nigroviridis