EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000005323 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: zinc finger protein 180-like
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 3096 bases
Position: chrBDQW01000383.1:577691-580786
Accession: 111233268
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000007243	zf-C2H2	PF00096.26	1.9e-43	1	8
ENSSDUP00000007243	zf-C2H2	PF00096.26	1.9e-43	2	8
ENSSDUP00000007243	zf-C2H2	PF00096.26	1.9e-43	3	8
ENSSDUP00000007243	zf-C2H2	PF00096.26	1.9e-43	4	8
ENSSDUP00000007243	zf-C2H2	PF00096.26	1.9e-43	5	8
ENSSDUP00000007243	zf-C2H2	PF00096.26	1.9e-43	6	8
ENSSDUP00000007243	zf-C2H2	PF00096.26	1.9e-43	7	8
ENSSDUP00000007243	zf-C2H2	PF00096.26	1.9e-43	8	8
ENSSDUP00000007243	zf-met	PF12874.7	8.9e-11	1	2
ENSSDUP00000007243	zf-met	PF12874.7	8.9e-11	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000007381	-	831	XM_022761045	ENSSDUP00000007243	276 (aa)	XP_022616766	-

Gene Model

Click here to download ENSSDUG00000005323's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000005323's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000005323	-	89	55.294	ENSSDUG00000009425	-	50	54.658
ENSSDUG00000005323	-	94	41.200	ENSSDUG00000016734	-	66	41.200
ENSSDUG00000005323	-	91	48.058	ENSSDUG00000020810	-	66	45.000
ENSSDUG00000005323	-	91	47.525	ENSSDUG00000020774	-	51	47.525
ENSSDUG00000005323	-	93	57.754	ENSSDUG00000009421	-	80	57.754
ENSSDUG00000005323	-	93	61.905	ENSSDUG00000015622	-	91	51.445
ENSSDUG00000005323	-	92	37.681	ENSSDUG00000018835	PRDM15	51	33.498
ENSSDUG00000005323	-	97	56.923	ENSSDUG00000009601	-	90	55.894
ENSSDUG00000005323	-	92	66.332	ENSSDUG00000005401	-	96	58.434
ENSSDUG00000005323	-	96	46.067	ENSSDUG00000022914	-	56	46.067
ENSSDUG00000005323	-	91	35.548	ENSSDUG00000000705	-	65	40.179
ENSSDUG00000005323	-	91	45.960	ENSSDUG00000023764	-	95	46.535
ENSSDUG00000005323	-	91	42.857	ENSSDUG00000011604	gfi1b	51	42.857
ENSSDUG00000005323	-	92	56.322	ENSSDUG00000000786	-	96	56.322
ENSSDUG00000005323	-	92	57.360	ENSSDUG00000006426	-	91	56.085
ENSSDUG00000005323	-	92	38.983	ENSSDUG00000007752	scrt1b	51	38.983
ENSSDUG00000005323	-	95	40.404	ENSSDUG00000006740	-	74	40.404
ENSSDUG00000005323	-	96	54.762	ENSSDUG00000009577	-	69	54.762
ENSSDUG00000005323	-	91	52.151	ENSSDUG00000001263	-	93	52.151
ENSSDUG00000005323	-	89	47.059	ENSSDUG00000002195	-	84	47.059
ENSSDUG00000005323	-	92	51.493	ENSSDUG00000011244	-	96	51.493
ENSSDUG00000005323	-	97	58.523	ENSSDUG00000009439	-	87	58.523
ENSSDUG00000005323	-	92	50.704	ENSSDUG00000000946	-	96	44.280
ENSSDUG00000005323	-	94	42.932	ENSSDUG00000016450	-	66	44.505
ENSSDUG00000005323	-	95	46.667	ENSSDUG00000011170	znf236	60	46.667
ENSSDUG00000005323	-	92	33.831	ENSSDUG00000003003	znf319b	87	33.948
ENSSDUG00000005323	-	93	50.370	ENSSDUG00000015159	-	90	52.590
ENSSDUG00000005323	-	99	44.292	ENSSDUG00000020805	-	80	44.292
ENSSDUG00000005323	-	91	45.050	ENSSDUG00000020788	-	60	45.050
ENSSDUG00000005323	-	95	40.000	ENSSDUG00000004892	-	89	40.000
ENSSDUG00000005323	-	88	30.405	ENSSDUG00000021415	si:ch211-216l23.1	50	30.405
ENSSDUG00000005323	-	91	39.496	ENSSDUG00000002174	-	70	39.496
ENSSDUG00000005323	-	99	56.154	ENSSDUG00000015182	-	70	56.154
ENSSDUG00000005323	-	82	36.913	ENSSDUG00000000889	-	75	36.913
ENSSDUG00000005323	-	96	35.294	ENSSDUG00000019932	ZNF319	95	36.437
ENSSDUG00000005323	-	89	65.000	ENSSDUG00000008682	-	72	65.000
ENSSDUG00000005323	-	95	55.670	ENSSDUG00000009553	-	54	55.670
ENSSDUG00000005323	-	91	41.667	ENSSDUG00000002488	-	57	41.667
ENSSDUG00000005323	-	93	46.429	ENSSDUG00000000695	-	76	46.429
ENSSDUG00000005323	-	93	54.183	ENSSDUG00000015204	-	95	54.183
ENSSDUG00000005323	-	96	48.227	ENSSDUG00000023765	-	88	48.227
ENSSDUG00000005323	-	97	33.143	ENSSDUG00000001918	znf366	50	32.164
ENSSDUG00000005323	-	95	42.584	ENSSDUG00000004089	-	97	42.857
ENSSDUG00000005323	-	98	44.843	ENSSDUG00000000799	-	71	44.843
ENSSDUG00000005323	-	97	35.842	ENSSDUG00000020397	prdm5	68	40.594
ENSSDUG00000005323	-	94	42.945	ENSSDUG00000013904	-	67	45.588
ENSSDUG00000005323	-	97	69.626	ENSSDUG00000009563	-	68	69.626
ENSSDUG00000005323	-	97	61.538	ENSSDUG00000004650	-	97	61.538
ENSSDUG00000005323	-	92	48.031	ENSSDUG00000004835	-	69	47.244
ENSSDUG00000005323	-	92	39.024	ENSSDUG00000001637	scrt2	51	37.121
ENSSDUG00000005323	-	93	37.500	ENSSDUG00000017250	-	54	37.500
ENSSDUG00000005323	-	97	39.370	ENSSDUG00000022412	znf648	58	39.370
ENSSDUG00000005323	-	91	42.446	ENSSDUG00000012926	-	74	42.446
ENSSDUG00000005323	-	95	50.579	ENSSDUG00000015254	-	91	50.579
ENSSDUG00000005323	-	94	69.231	ENSSDUG00000007336	-	89	69.380
ENSSDUG00000005323	-	96	47.619	ENSSDUG00000006808	-	72	47.619
ENSSDUG00000005323	-	96	62.847	ENSSDUG00000009534	-	80	55.102
ENSSDUG00000005323	-	99	44.922	ENSSDUG00000006463	-	88	44.922
ENSSDUG00000005323	-	97	54.297	ENSSDUG00000008943	-	86	54.297
ENSSDUG00000005323	-	92	83.333	ENSSDUG00000004867	-	97	83.333
ENSSDUG00000005323	-	95	44.231	ENSSDUG00000015013	-	62	44.231
ENSSDUG00000005323	-	91	32.110	ENSSDUG00000014574	znf526	64	39.333
ENSSDUG00000005323	-	92	54.762	ENSSDUG00000015191	-	91	54.762
ENSSDUG00000005323	-	93	42.336	ENSSDUG00000008329	-	86	42.336
ENSSDUG00000005323	-	97	41.593	ENSSDUG00000020595	-	82	41.593
ENSSDUG00000005323	-	90	38.636	ENSSDUG00000018060	snai2	66	38.636

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000005323	-	93	52.140	ENSEASG00005010619	-	99	52.140	Equus_asinus_asinus
ENSSDUG00000005323	-	91	49.206	ENSEASG00005010623	-	93	49.749	Equus_asinus_asinus
ENSSDUG00000005323	-	91	50.775	ENSECAG00000011512	-	96	50.775	Equus_caballus
ENSSDUG00000005323	-	91	53.462	ENSMZEG00005022638	-	75	53.462	Maylandia_zebra
ENSSDUG00000005323	-	98	53.462	ENSNBRG00000024354	-	94	53.462	Neolamprologus_brichardi