EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000005362 (Gene tree)
Gene ID: 111217936
Gene Symbol: patl1
Alias: fa11d04|wu:fa11d04|zgc:158239
Full Name: PAT1 homolog 1%2C processing body mRNA decay factor
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 16282 bases
Position: chrBDQW01000050.1:4959050-4975331
Accession: 111217936
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000007358	PAT1	PF09770.9	1.9e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000007498	-	2599	XM_022739984	ENSSDUP00000007358	841 (aa)	XP_022595705	UPI000BBE67EE

Gene Model

Click here to download ENSSDUG00000005362's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000005362's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000005362	patl1	50	36.425	ENSG00000229474	PATL2	99	38.292	Homo_sapiens
ENSSDUG00000005362	patl1	79	59.722	ENSG00000166889	PATL1	92	68.333	Homo_sapiens
ENSSDUG00000005362	patl1	82	90.997	ENSAPOG00000021290	patl1	99	85.205	Acanthochromis_polyacanthus
ENSSDUG00000005362	patl1	52	34.979	ENSAPOG00000022988	patl2	62	34.988	Acanthochromis_polyacanthus
ENSSDUG00000005362	patl1	79	59.722	ENSAMEG00000014215	PATL1	92	68.333	Ailuropoda_melanoleuca
ENSSDUG00000005362	patl1	99	78.759	ENSACIG00000005182	patl1	96	91.892	Amphilophus_citrinellus
ENSSDUG00000005362	patl1	95	81.635	ENSAOCG00000021993	patl1	95	81.203	Amphiprion_ocellaris
ENSSDUG00000005362	patl1	100	87.158	ENSAPEG00000021391	patl1	100	87.204	Amphiprion_percula
ENSSDUG00000005362	patl1	100	84.798	ENSATEG00000002230	patl1	100	83.274	Anabas_testudineus
ENSSDUG00000005362	patl1	51	34.934	ENSATEG00000019567	patl2	62	35.539	Anabas_testudineus
ENSSDUG00000005362	patl1	50	48.276	ENSAPLG00000013394	PATL1	93	46.436	Anas_platyrhynchos
ENSSDUG00000005362	patl1	57	37.647	ENSAPLG00000003980	PATL2	64	39.651	Anas_platyrhynchos
ENSSDUG00000005362	patl1	75	64.407	ENSACAG00000006607	PATL1	89	64.407	Anolis_carolinensis
ENSSDUG00000005362	patl1	79	59.722	ENSANAG00000023078	PATL1	92	68.333	Aotus_nancymaae
ENSSDUG00000005362	patl1	100	85.850	ENSACLG00000005144	patl1	100	85.850	Astatotilapia_calliptera
ENSSDUG00000005362	patl1	95	87.940	ENSAMXG00000010731	patl1	99	87.500	Astyanax_mexicanus
ENSSDUG00000005362	patl1	51	36.681	ENSAMXG00000020293	patl2	61	36.300	Astyanax_mexicanus
ENSSDUG00000005362	patl1	79	59.722	ENSBTAG00000005913	PATL1	92	68.333	Bos_taurus
ENSSDUG00000005362	patl1	79	59.722	ENSCJAG00000016192	PATL1	92	68.333	Callithrix_jacchus
ENSSDUG00000005362	patl1	50	35.491	ENSCJAG00000002379	PATL2	77	36.552	Callithrix_jacchus
ENSSDUG00000005362	patl1	79	59.722	ENSCAFG00000007581	PATL1	92	68.333	Canis_familiaris
ENSSDUG00000005362	patl1	79	59.722	ENSCAFG00020001648	PATL1	92	68.333	Canis_lupus_dingo
ENSSDUG00000005362	patl1	52	37.029	ENSCHIG00000026665	PATL2	77	37.650	Capra_hircus
ENSSDUG00000005362	patl1	79	59.722	ENSCHIG00000025913	PATL1	92	68.333	Capra_hircus
ENSSDUG00000005362	patl1	80	61.111	ENSTSYG00000012748	PATL1	88	68.333	Carlito_syrichta
ENSSDUG00000005362	patl1	50	36.343	ENSTSYG00000032456	PATL2	73	37.010	Carlito_syrichta
ENSSDUG00000005362	patl1	76	63.889	ENSCAPG00000013668	PATL1	91	70.000	Cavia_aperea
ENSSDUG00000005362	patl1	76	63.889	ENSCPOG00000006827	PATL1	92	70.000	Cavia_porcellus
ENSSDUG00000005362	patl1	50	36.117	ENSCCAG00000025261	PATL2	73	37.592	Cebus_capucinus
ENSSDUG00000005362	patl1	79	59.722	ENSCCAG00000023759	PATL1	92	68.333	Cebus_capucinus
ENSSDUG00000005362	patl1	79	59.722	ENSCATG00000009629	PATL1	92	68.333	Cercocebus_atys
ENSSDUG00000005362	patl1	50	36.652	ENSCATG00000034794	PATL2	99	38.292	Cercocebus_atys
ENSSDUG00000005362	patl1	78	64.062	ENSCLAG00000003427	PATL1	91	71.154	Chinchilla_lanigera
ENSSDUG00000005362	patl1	71	48.397	ENSCSAG00000006095	PATL1	93	47.786	Chlorocebus_sabaeus
ENSSDUG00000005362	patl1	59	54.000	ENSCHOG00000001611	PATL1	83	54.000	Choloepus_hoffmanni
ENSSDUG00000005362	patl1	50	37.832	ENSCPBG00000006150	PATL2	62	38.554	Chrysemys_picta_bellii
ENSSDUG00000005362	patl1	79	59.155	ENSCANG00000039197	PATL1	91	67.797	Colobus_angolensis_palliatus
ENSSDUG00000005362	patl1	50	36.425	ENSCANG00000013856	PATL2	74	37.805	Colobus_angolensis_palliatus
ENSSDUG00000005362	patl1	51	35.635	ENSCGRG00001010801	Patl2	76	37.150	Cricetulus_griseus_chok1gshd
ENSSDUG00000005362	patl1	78	68.333	ENSCGRG00001024927	Patl1	92	68.333	Cricetulus_griseus_chok1gshd
ENSSDUG00000005362	patl1	77	69.231	ENSCGRG00000000461	Patl1	91	69.231	Cricetulus_griseus_crigri
ENSSDUG00000005362	patl1	51	35.635	ENSCGRG00000013007	Patl2	76	37.150	Cricetulus_griseus_crigri
ENSSDUG00000005362	patl1	100	85.427	ENSCSEG00000008261	patl1	100	85.409	Cynoglossus_semilaevis
ENSSDUG00000005362	patl1	52	33.036	ENSCVAG00000016203	patl2	60	33.503	Cyprinodon_variegatus
ENSSDUG00000005362	patl1	93	83.420	ENSCVAG00000006664	patl1	92	92.500	Cyprinodon_variegatus
ENSSDUG00000005362	patl1	100	70.700	ENSDARG00000017423	patl1	100	70.700	Danio_rerio
ENSSDUG00000005362	patl1	69	57.812	ENSDNOG00000038865	PATL1	99	46.154	Dasypus_novemcinctus
ENSSDUG00000005362	patl1	79	61.111	ENSDORG00000000237	Patl1	92	70.000	Dipodomys_ordii
ENSSDUG00000005362	patl1	50	35.388	ENSEASG00005017984	PATL2	73	36.430	Equus_asinus_asinus
ENSSDUG00000005362	patl1	79	59.722	ENSEASG00005007963	PATL1	92	68.333	Equus_asinus_asinus
ENSSDUG00000005362	patl1	50	35.909	ENSECAG00000013462	PATL2	73	36.983	Equus_caballus
ENSSDUG00000005362	patl1	79	59.722	ENSECAG00000011411	PATL1	92	68.333	Equus_caballus
ENSSDUG00000005362	patl1	57	34.592	ENSELUG00000023244	patl2	57	35.817	Esox_lucius
ENSSDUG00000005362	patl1	100	72.941	ENSELUG00000024249	patl1	100	73.208	Esox_lucius
ENSSDUG00000005362	patl1	79	59.722	ENSFCAG00000015573	PATL1	92	68.333	Felis_catus
ENSSDUG00000005362	patl1	50	37.188	ENSFCAG00000027170	PATL2	75	37.923	Felis_catus
ENSSDUG00000005362	patl1	58	35.375	ENSFALG00000009768	PATL2	69	34.455	Ficedula_albicollis
ENSSDUG00000005362	patl1	79	59.155	ENSFALG00000012150	PATL1	91	66.071	Ficedula_albicollis
ENSSDUG00000005362	patl1	75	60.938	ENSFDAG00000016128	PATL1	91	69.231	Fukomys_damarensis
ENSSDUG00000005362	patl1	99	81.579	ENSFHEG00000017790	patl1	100	80.144	Fundulus_heteroclitus
ENSSDUG00000005362	patl1	53	36.306	ENSGALG00000002167	PATL2	50	38.366	Gallus_gallus
ENSSDUG00000005362	patl1	79	68.333	ENSGALG00000042641	PATL1	94	68.333	Gallus_gallus
ENSSDUG00000005362	patl1	100	81.451	ENSGAFG00000006508	patl1	100	79.310	Gambusia_affinis
ENSSDUG00000005362	patl1	80	87.931	ENSGACG00000016448	patl1	99	73.472	Gasterosteus_aculeatus
ENSSDUG00000005362	patl1	78	68.333	ENSGAGG00000004461	PATL1	93	68.333	Gopherus_agassizii
ENSSDUG00000005362	patl1	50	36.425	ENSGGOG00000025923	PATL2	73	37.805	Gorilla_gorilla
ENSSDUG00000005362	patl1	79	59.722	ENSGGOG00000004335	PATL1	92	68.333	Gorilla_gorilla
ENSSDUG00000005362	patl1	100	85.731	ENSHBUG00000005365	patl1	100	85.731	Haplochromis_burtoni
ENSSDUG00000005362	patl1	79	62.500	ENSHGLG00000018173	PATL1	92	70.000	Heterocephalus_glaber_female
ENSSDUG00000005362	patl1	77	58.065	ENSHGLG00100003453	PATL1	92	64.583	Heterocephalus_glaber_male
ENSSDUG00000005362	patl1	100	80.166	ENSHCOG00000001898	patl1	100	79.929	Hippocampus_comes
ENSSDUG00000005362	patl1	50	35.973	ENSSTOG00000033848	PATL2	74	37.681	Ictidomys_tridecemlineatus
ENSSDUG00000005362	patl1	78	59.016	ENSSTOG00000013764	PATL1	91	69.388	Ictidomys_tridecemlineatus
ENSSDUG00000005362	patl1	75	60.938	ENSJJAG00000010135	Patl1	89	71.154	Jaculus_jaculus
ENSSDUG00000005362	patl1	100	84.935	ENSKMAG00000020848	patl1	100	84.104	Kryptolebias_marmoratus
ENSSDUG00000005362	patl1	100	88.823	ENSLBEG00000023617	patl1	100	88.942	Labrus_bergylta
ENSSDUG00000005362	patl1	73	70.833	ENSLACG00000004640	PATL1	89	70.833	Latimeria_chalumnae
ENSSDUG00000005362	patl1	92	68.519	ENSLOCG00000000717	patl1	98	67.757	Lepisosteus_oculatus
ENSSDUG00000005362	patl1	80	59.722	ENSLAFG00000015161	PATL1	92	68.333	Loxodonta_africana
ENSSDUG00000005362	patl1	79	59.722	ENSMFAG00000040851	PATL1	92	68.333	Macaca_fascicularis
ENSSDUG00000005362	patl1	79	59.722	ENSMMUG00000017287	PATL1	92	68.333	Macaca_mulatta
ENSSDUG00000005362	patl1	50	36.652	ENSMNEG00000034510	PATL2	74	38.049	Macaca_nemestrina
ENSSDUG00000005362	patl1	79	59.722	ENSMNEG00000038692	PATL1	92	68.333	Macaca_nemestrina
ENSSDUG00000005362	patl1	50	36.652	ENSMLEG00000042248	PATL2	73	38.049	Mandrillus_leucophaeus
ENSSDUG00000005362	patl1	79	59.722	ENSMLEG00000030044	PATL1	92	68.333	Mandrillus_leucophaeus
ENSSDUG00000005362	patl1	100	86.256	ENSMAMG00000003950	patl1	99	90.728	Mastacembelus_armatus
ENSSDUG00000005362	patl1	100	85.850	ENSMZEG00005013404	patl1	100	85.850	Maylandia_zebra
ENSSDUG00000005362	patl1	72	69.643	ENSMGAG00000003406	PATL1	92	69.643	Meleagris_gallopavo
ENSSDUG00000005362	patl1	71	43.210	ENSMAUG00000012059	Patl1	85	43.302	Mesocricetus_auratus
ENSSDUG00000005362	patl1	54	34.255	ENSMAUG00000001008	Patl2	77	36.341	Mesocricetus_auratus
ENSSDUG00000005362	patl1	79	59.722	ENSMICG00000004172	PATL1	89	68.333	Microcebus_murinus
ENSSDUG00000005362	patl1	79	60.563	ENSMOCG00000010087	Patl1	92	68.333	Microtus_ochrogaster
ENSSDUG00000005362	patl1	79	83.972	ENSMMOG00000013711	patl1	98	84.000	Mola_mola
ENSSDUG00000005362	patl1	50	37.307	ENSMODG00000017690	PATL2	73	37.176	Monodelphis_domestica
ENSSDUG00000005362	patl1	76	59.722	ENSMODG00000020201	PATL1	89	68.333	Monodelphis_domestica
ENSSDUG00000005362	patl1	88	80.707	ENSMALG00000018706	patl1	100	74.561	Monopterus_albus
ENSSDUG00000005362	patl1	79	61.111	MGP_CAROLIEiJ_G0022739	Patl1	92	68.333	Mus_caroli
ENSSDUG00000005362	patl1	79	61.111	ENSMUSG00000046139	Patl1	92	68.333	Mus_musculus
ENSSDUG00000005362	patl1	79	61.111	MGP_PahariEiJ_G0014233	Patl1	92	68.333	Mus_pahari
ENSSDUG00000005362	patl1	79	61.111	MGP_SPRETEiJ_G0023652	Patl1	92	68.333	Mus_spretus
ENSSDUG00000005362	patl1	79	59.722	ENSMPUG00000014607	PATL1	92	68.333	Mustela_putorius_furo
ENSSDUG00000005362	patl1	79	59.722	ENSMLUG00000011169	PATL1	91	68.333	Myotis_lucifugus
ENSSDUG00000005362	patl1	79	59.722	ENSNGAG00000003682	Patl1	91	68.333	Nannospalax_galili
ENSSDUG00000005362	patl1	71	81.218	ENSNBRG00000015372	patl1	93	53.430	Neolamprologus_brichardi
ENSSDUG00000005362	patl1	79	59.722	ENSNLEG00000013081	PATL1	92	68.333	Nomascus_leucogenys
ENSSDUG00000005362	patl1	50	36.425	ENSNLEG00000005673	PATL2	74	37.805	Nomascus_leucogenys
ENSSDUG00000005362	patl1	56	54.545	ENSMEUG00000009391	PATL1	73	54.194	Notamacropus_eugenii
ENSSDUG00000005362	patl1	56	54.455	ENSOPRG00000007963	PATL1	71	54.743	Ochotona_princeps
ENSSDUG00000005362	patl1	100	84.423	ENSONIG00000004170	patl1	100	86.326	Oreochromis_niloticus
ENSSDUG00000005362	patl1	51	34.183	ENSOCUG00000006339	PATL2	77	36.275	Oryctolagus_cuniculus
ENSSDUG00000005362	patl1	76	59.722	ENSOCUG00000002156	PATL1	89	68.333	Oryctolagus_cuniculus
ENSSDUG00000005362	patl1	82	89.655	ENSORLG00015022240	patl1	90	80.196	Oryzias_latipes_hsok
ENSSDUG00000005362	patl1	79	59.722	ENSOGAG00000004351	PATL1	92	68.333	Otolemur_garnettii
ENSSDUG00000005362	patl1	50	36.446	ENSOGAG00000004709	PATL2	74	36.765	Otolemur_garnettii
ENSSDUG00000005362	patl1	78	59.375	ENSOARG00000012005	PATL1	87	69.231	Ovis_aries
ENSSDUG00000005362	patl1	50	36.569	ENSPPAG00000007221	PATL2	73	37.956	Pan_paniscus
ENSSDUG00000005362	patl1	79	59.722	ENSPPAG00000034275	PATL1	92	68.333	Pan_paniscus
ENSSDUG00000005362	patl1	78	59.375	ENSPPRG00000020639	PATL1	91	69.231	Panthera_pardus
ENSSDUG00000005362	patl1	50	36.652	ENSPPRG00000004279	PATL2	75	37.440	Panthera_pardus
ENSSDUG00000005362	patl1	50	36.735	ENSPTIG00000018964	PATL2	75	37.530	Panthera_tigris_altaica
ENSSDUG00000005362	patl1	79	59.722	ENSPTIG00000019298	PATL1	92	68.333	Panthera_tigris_altaica
ENSSDUG00000005362	patl1	50	36.425	ENSPTRG00000041536	PATL2	73	37.805	Pan_troglodytes
ENSSDUG00000005362	patl1	79	59.722	ENSPTRG00000003697	PATL1	92	68.333	Pan_troglodytes
ENSSDUG00000005362	patl1	79	59.722	ENSPANG00000035620	PATL1	92	68.333	Papio_anubis
ENSSDUG00000005362	patl1	50	36.652	ENSPANG00000018026	PATL2	74	38.049	Papio_anubis
ENSSDUG00000005362	patl1	100	70.903	ENSPKIG00000016224	patl1	100	70.903	Paramormyrops_kingsleyae
ENSSDUG00000005362	patl1	81	66.667	ENSPSIG00000016206	PATL1	89	66.667	Pelodiscus_sinensis
ENSSDUG00000005362	patl1	100	77.699	ENSPMGG00000002644	patl1	100	77.435	Periophthalmus_magnuspinnatus
ENSSDUG00000005362	patl1	78	68.333	ENSPEMG00000014215	Patl1	92	68.333	Peromyscus_maniculatus_bairdii
ENSSDUG00000005362	patl1	79	61.111	ENSPCIG00000010852	PATL1	92	68.333	Phascolarctos_cinereus
ENSSDUG00000005362	patl1	51	35.828	ENSPFOG00000007305	patl2	54	35.949	Poecilia_formosa
ENSSDUG00000005362	patl1	100	79.572	ENSPFOG00000007768	patl1	100	78.784	Poecilia_formosa
ENSSDUG00000005362	patl1	100	81.235	ENSPLAG00000018465	patl1	100	79.335	Poecilia_latipinna
ENSSDUG00000005362	patl1	51	35.828	ENSPLAG00000020713	patl2	54	35.949	Poecilia_latipinna
ENSSDUG00000005362	patl1	51	35.828	ENSPMEG00000018942	patl2	54	35.949	Poecilia_mexicana
ENSSDUG00000005362	patl1	100	80.998	ENSPMEG00000006555	patl1	100	79.097	Poecilia_mexicana
ENSSDUG00000005362	patl1	90	78.996	ENSPREG00000003874	patl1	95	76.750	Poecilia_reticulata
ENSSDUG00000005362	patl1	79	59.722	ENSPPYG00000003230	PATL1	92	68.333	Pongo_abelii
ENSSDUG00000005362	patl1	51	38.359	ENSPCOG00000000295	PATL2	99	40.270	Propithecus_coquereli
ENSSDUG00000005362	patl1	79	59.722	ENSPCOG00000020770	PATL1	92	68.333	Propithecus_coquereli
ENSSDUG00000005362	patl1	68	47.917	ENSPVAG00000015239	PATL1	99	46.248	Pteropus_vampyrus
ENSSDUG00000005362	patl1	79	93.478	ENSPNYG00000018936	patl1	100	93.498	Pundamilia_nyererei
ENSSDUG00000005362	patl1	100	73.404	ENSPNAG00000017907	patl1	100	73.815	Pygocentrus_nattereri
ENSSDUG00000005362	patl1	50	36.807	ENSPNAG00000002315	patl2	61	36.682	Pygocentrus_nattereri
ENSSDUG00000005362	patl1	79	61.111	ENSRNOG00000021052	Patl1	92	68.333	Rattus_norvegicus
ENSSDUG00000005362	patl1	79	59.722	ENSRBIG00000032263	PATL1	92	68.333	Rhinopithecus_bieti
ENSSDUG00000005362	patl1	79	59.722	ENSRROG00000032861	PATL1	92	68.333	Rhinopithecus_roxellana
ENSSDUG00000005362	patl1	79	59.722	ENSSBOG00000025195	PATL1	92	68.333	Saimiri_boliviensis_boliviensis
ENSSDUG00000005362	patl1	79	59.722	ENSSHAG00000004309	PATL1	91	68.333	Sarcophilus_harrisii
ENSSDUG00000005362	patl1	100	71.700	ENSSFOG00015009614	patl1	100	71.819	Scleropages_formosus
ENSSDUG00000005362	patl1	100	88.124	ENSSMAG00000009482	patl1	100	90.024	Scophthalmus_maximus
ENSSDUG00000005362	patl1	100	99.287	ENSSLDG00000019146	patl1	100	99.287	Seriola_lalandi_dorsalis
ENSSDUG00000005362	patl1	56	49.715	ENSSARG00000009600	PATL1	68	48.577	Sorex_araneus
ENSSDUG00000005362	patl1	76	61.972	ENSSPUG00000009453	PATL1	89	71.667	Sphenodon_punctatus
ENSSDUG00000005362	patl1	92	91.814	ENSSPAG00000003187	patl1	94	89.744	Stegastes_partitus
ENSSDUG00000005362	patl1	76	59.722	ENSSSCG00000013124	PATL1	89	68.333	Sus_scrofa
ENSSDUG00000005362	patl1	79	57.746	ENSTGUG00000006222	PATL1	92	66.071	Taeniopygia_guttata
ENSSDUG00000005362	patl1	100	73.223	ENSTRUG00000000709	patl1	100	72.162	Takifugu_rubripes
ENSSDUG00000005362	patl1	62	63.462	ENSTBEG00000000796	PATL1	82	63.462	Tupaia_belangeri
ENSSDUG00000005362	patl1	62	53.368	ENSTTRG00000009389	PATL1	79	54.472	Tursiops_truncatus
ENSSDUG00000005362	patl1	77	64.583	ENSUMAG00000018634	PATL1	91	80.556	Ursus_maritimus
ENSSDUG00000005362	patl1	78	59.375	ENSVVUG00000016668	PATL1	91	66.667	Vulpes_vulpes
ENSSDUG00000005362	patl1	67	94.915	ENSXCOG00000010808	patl1	99	94.545	Xiphophorus_couchianus
ENSSDUG00000005362	patl1	100	80.737	ENSXMAG00000013834	patl1	100	79.429	Xiphophorus_maculatus
ENSSDUG00000005362	patl1	51	35.828	ENSXMAG00000018464	patl2	54	35.949	Xiphophorus_maculatus