EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000005388 (Gene tree)
Gene ID: 111231555
Gene Symbol: -
Alias: -
Full Name: transcription activator BRG1-like
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 17604 bases
Position: chrBDQW01000302.1:1182448-1200051
Accession: 111231555
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000007452	ResIII	PF04851.15	1.6e-08	1	1
ENSSDUP00000007523	ResIII	PF04851.15	1.7e-08	1	1
ENSSDUP00000007452	BRK	PF07533.16	6e-16	1	1
ENSSDUP00000007523	BRK	PF07533.16	6.2e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000007663	-	5061	XM_022758697	ENSSDUP00000007523	1686 (aa)	XP_022614418	-
ENSSDUT00000007591	-	5027	-	ENSSDUP00000007452	1619 (aa)	-	-

Gene Model

Click here to download ENSSDUG00000005388's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000005388's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000005388	-	95	83.220	ENSSDUG00000017298	smarca4a	99	83.024
ENSSDUG00000005388	-	97	75.883	ENSSDUG00000008852	-	95	71.103

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000005388	-	95	86.849	ENSG00000127616	SMARCA4	99	95.652	Homo_sapiens
ENSSDUG00000005388	-	73	89.066	ENSAPOG00000003509	smarca4a	98	86.443	Acanthochromis_polyacanthus
ENSSDUG00000005388	-	99	98.150	ENSAPOG00000004542	SMARCA4	99	98.150	Acanthochromis_polyacanthus
ENSSDUG00000005388	-	98	80.964	ENSAMEG00000010868	SMARCA4	99	82.164	Ailuropoda_melanoleuca
ENSSDUG00000005388	-	95	86.243	ENSACIG00000021550	smarca4a	98	86.245	Amphilophus_citrinellus
ENSSDUG00000005388	-	98	87.962	ENSACIG00000003035	-	99	93.448	Amphilophus_citrinellus
ENSSDUG00000005388	-	97	92.640	ENSAOCG00000009450	-	97	96.721	Amphiprion_ocellaris
ENSSDUG00000005388	-	72	91.088	ENSAOCG00000019167	smarca4a	100	85.685	Amphiprion_ocellaris
ENSSDUG00000005388	-	72	91.174	ENSAPEG00000015559	smarca4a	100	85.754	Amphiprion_percula
ENSSDUG00000005388	-	100	97.970	ENSAPEG00000023108	-	97	97.970	Amphiprion_percula
ENSSDUG00000005388	-	98	85.037	ENSATEG00000011524	smarca4a	99	86.572	Anabas_testudineus
ENSSDUG00000005388	-	100	95.988	ENSATEG00000001094	-	98	94.814	Anabas_testudineus
ENSSDUG00000005388	-	95	86.671	ENSANAG00000036991	SMARCA4	99	82.964	Aotus_nancymaae
ENSSDUG00000005388	-	99	97.155	ENSACLG00000008638	-	99	97.155	Astatotilapia_calliptera
ENSSDUG00000005388	-	100	84.236	ENSACLG00000000163	smarca4a	98	87.227	Astatotilapia_calliptera
ENSSDUG00000005388	-	97	87.278	ENSAMXG00000011238	-	95	90.102	Astyanax_mexicanus
ENSSDUG00000005388	-	98	81.556	ENSAMXG00000021023	smarca4a	99	83.772	Astyanax_mexicanus
ENSSDUG00000005388	-	95	86.886	ENSBTAG00000019220	SMARCA4	99	86.254	Bos_taurus
ENSSDUG00000005388	-	95	88.785	ENSCJAG00000005936	SMARCA4	94	88.201	Callithrix_jacchus
ENSSDUG00000005388	-	95	86.973	ENSCAFG00000017584	SMARCA4	99	86.173	Canis_familiaris
ENSSDUG00000005388	-	95	88.642	ENSCAFG00020024620	SMARCA4	98	86.173	Canis_lupus_dingo
ENSSDUG00000005388	-	95	83.178	ENSCHIG00000015318	SMARCA4	99	82.684	Capra_hircus
ENSSDUG00000005388	-	98	83.865	ENSTSYG00000012966	SMARCA4	99	86.254	Carlito_syrichta
ENSSDUG00000005388	-	97	77.679	ENSCAPG00000015932	SMARCA4	94	89.870	Cavia_aperea
ENSSDUG00000005388	-	95	87.097	ENSCPOG00000015549	SMARCA4	99	86.235	Cavia_porcellus
ENSSDUG00000005388	-	98	81.433	ENSCCAG00000031660	SMARCA4	98	83.292	Cebus_capucinus
ENSSDUG00000005388	-	98	84.342	ENSCATG00000029530	SMARCA4	99	86.049	Cercocebus_atys
ENSSDUG00000005388	-	95	86.886	ENSCLAG00000011946	SMARCA4	99	86.502	Chinchilla_lanigera
ENSSDUG00000005388	-	95	86.600	ENSCPBG00000009994	SMARCA4	99	86.200	Chrysemys_picta_bellii
ENSSDUG00000005388	-	98	84.342	ENSCANG00000036013	SMARCA4	99	86.049	Colobus_angolensis_palliatus
ENSSDUG00000005388	-	95	86.725	ENSCGRG00001016732	Smarca4	99	85.864	Cricetulus_griseus_chok1gshd
ENSSDUG00000005388	-	95	86.725	ENSCGRG00000017242	Smarca4	99	85.864	Cricetulus_griseus_crigri
ENSSDUG00000005388	-	95	83.301	ENSCSEG00000014771	smarca4a	99	85.028	Cynoglossus_semilaevis
ENSSDUG00000005388	-	95	84.450	ENSCVAG00000006979	smarca4a	99	85.901	Cyprinodon_variegatus
ENSSDUG00000005388	-	97	91.111	ENSCVAG00000003018	-	99	92.879	Cyprinodon_variegatus
ENSSDUG00000005388	-	98	86.449	ENSDARG00000077226	smarca4a	99	87.454	Danio_rerio
ENSSDUG00000005388	-	95	84.098	ENSDARG00000104339	SMARCA4	94	87.058	Danio_rerio
ENSSDUG00000005388	-	94	84.424	ENSDNOG00000048847	SMARCA4	90	90.584	Dasypus_novemcinctus
ENSSDUG00000005388	-	89	78.547	ENSDORG00000002544	Smarca4	91	81.522	Dipodomys_ordii
ENSSDUG00000005388	-	97	73.396	ENSETEG00000013361	SMARCA4	94	74.872	Echinops_telfairi
ENSSDUG00000005388	-	95	87.659	ENSEASG00005006167	SMARCA4	99	84.039	Equus_asinus_asinus
ENSSDUG00000005388	-	95	86.849	ENSECAG00000008334	SMARCA4	99	85.926	Equus_caballus
ENSSDUG00000005388	-	98	84.122	ENSELUG00000010247	smarca4a	99	83.902	Esox_lucius
ENSSDUG00000005388	-	97	82.063	ENSELUG00000023232	-	94	81.675	Esox_lucius
ENSSDUG00000005388	-	95	86.989	ENSFCAG00000004894	SMARCA4	99	86.128	Felis_catus
ENSSDUG00000005388	-	95	80.467	ENSFALG00000004208	SMARCA4	95	83.754	Ficedula_albicollis
ENSSDUG00000005388	-	95	83.387	ENSFDAG00000012237	SMARCA4	97	86.503	Fukomys_damarensis
ENSSDUG00000005388	-	100	95.682	ENSFHEG00000007902	-	99	93.689	Fundulus_heteroclitus
ENSSDUG00000005388	-	96	82.253	ENSFHEG00000010182	smarca4a	99	85.213	Fundulus_heteroclitus
ENSSDUG00000005388	-	84	83.740	ENSGMOG00000002649	smarca4a	88	84.646	Gadus_morhua
ENSSDUG00000005388	-	92	87.071	ENSGMOG00000005756	-	90	84.107	Gadus_morhua
ENSSDUG00000005388	-	76	82.215	ENSGALG00000047145	SMARCA4	100	85.678	Gallus_gallus
ENSSDUG00000005388	-	96	89.067	ENSGAFG00000008827	-	99	88.559	Gambusia_affinis
ENSSDUG00000005388	-	85	88.205	ENSGAFG00000014900	smarca4a	97	87.647	Gambusia_affinis
ENSSDUG00000005388	-	99	88.081	ENSGACG00000016033	-	99	88.492	Gasterosteus_aculeatus
ENSSDUG00000005388	-	95	82.710	ENSGACG00000006691	smarca4a	99	84.220	Gasterosteus_aculeatus
ENSSDUG00000005388	-	95	86.770	ENSGAGG00000016757	SMARCA4	99	86.369	Gopherus_agassizii
ENSSDUG00000005388	-	98	84.342	ENSGGOG00000009882	SMARCA4	99	86.049	Gorilla_gorilla
ENSSDUG00000005388	-	100	96.479	ENSHBUG00000005447	-	99	95.543	Haplochromis_burtoni
ENSSDUG00000005388	-	100	84.298	ENSHBUG00000021172	smarca4a	99	86.675	Haplochromis_burtoni
ENSSDUG00000005388	-	95	86.481	ENSHGLG00000010519	SMARCA4	99	85.978	Heterocephalus_glaber_female
ENSSDUG00000005388	-	95	86.749	ENSHGLG00100013774	SMARCA4	99	85.697	Heterocephalus_glaber_male
ENSSDUG00000005388	-	99	82.567	ENSHCOG00000009510	smarca4a	96	86.624	Hippocampus_comes
ENSSDUG00000005388	-	96	86.244	ENSIPUG00000016346	-	95	88.417	Ictalurus_punctatus
ENSSDUG00000005388	-	98	85.750	ENSIPUG00000006107	smarca4a	99	86.943	Ictalurus_punctatus
ENSSDUG00000005388	-	95	86.911	ENSSTOG00000007939	SMARCA4	99	86.049	Ictidomys_tridecemlineatus
ENSSDUG00000005388	-	98	82.667	ENSJJAG00000012877	Smarca4	99	83.908	Jaculus_jaculus
ENSSDUG00000005388	-	98	83.009	ENSKMAG00000011931	smarca4a	99	85.954	Kryptolebias_marmoratus
ENSSDUG00000005388	-	100	95.623	ENSKMAG00000019518	-	99	94.656	Kryptolebias_marmoratus
ENSSDUG00000005388	-	94	90.427	ENSLBEG00000020655	-	99	87.481	Labrus_bergylta
ENSSDUG00000005388	-	99	81.762	ENSLBEG00000017383	smarca4a	97	84.065	Labrus_bergylta
ENSSDUG00000005388	-	54	76.854	ENSLACG00000015309	SMARCA4	100	80.401	Latimeria_chalumnae
ENSSDUG00000005388	-	95	84.701	ENSLOCG00000007820	smarca4a	99	82.873	Lepisosteus_oculatus
ENSSDUG00000005388	-	95	86.927	ENSLAFG00000001433	SMARCA4	99	86.067	Loxodonta_africana
ENSSDUG00000005388	-	98	84.342	ENSMFAG00000032146	SMARCA4	98	86.111	Macaca_fascicularis
ENSSDUG00000005388	-	98	84.342	ENSMMUG00000012042	SMARCA4	97	90.224	Macaca_mulatta
ENSSDUG00000005388	-	98	84.404	ENSMNEG00000028512	SMARCA4	99	85.970	Macaca_nemestrina
ENSSDUG00000005388	-	98	84.279	ENSMLEG00000034976	SMARCA4	99	86.111	Mandrillus_leucophaeus
ENSSDUG00000005388	-	96	87.284	ENSMAMG00000009256	smarca4a	99	86.687	Mastacembelus_armatus
ENSSDUG00000005388	-	100	97.900	ENSMAMG00000002841	-	99	96.739	Mastacembelus_armatus
ENSSDUG00000005388	-	100	84.298	ENSMZEG00005003889	smarca4a	99	86.560	Maylandia_zebra
ENSSDUG00000005388	-	99	96.599	ENSMZEG00005023861	-	99	96.599	Maylandia_zebra
ENSSDUG00000005388	-	95	86.679	ENSMAUG00000020731	Smarca4	99	85.820	Mesocricetus_auratus
ENSSDUG00000005388	-	95	86.927	ENSMICG00000009806	SMARCA4	99	86.067	Microcebus_murinus
ENSSDUG00000005388	-	95	86.369	ENSMOCG00000022209	Smarca4	99	85.635	Microtus_ochrogaster
ENSSDUG00000005388	-	98	80.888	ENSMMOG00000007571	smarca4a	98	85.254	Mola_mola
ENSSDUG00000005388	-	96	89.572	ENSMMOG00000008466	-	99	90.006	Mola_mola
ENSSDUG00000005388	-	98	82.903	ENSMODG00000006287	SMARCA4	99	84.061	Monodelphis_domestica
ENSSDUG00000005388	-	90	95.902	ENSMALG00000021534	-	99	91.873	Monopterus_albus
ENSSDUG00000005388	-	96	83.865	ENSMALG00000003388	smarca4a	99	86.857	Monopterus_albus
ENSSDUG00000005388	-	95	86.600	MGP_CAROLIEiJ_G0031879	Smarca4	100	86.399	Mus_caroli
ENSSDUG00000005388	-	95	86.600	ENSMUSG00000032187	Smarca4	99	86.399	Mus_musculus
ENSSDUG00000005388	-	95	86.513	MGP_PahariEiJ_G0014745	Smarca4	100	86.399	Mus_pahari
ENSSDUG00000005388	-	95	86.600	MGP_SPRETEiJ_G0033003	Smarca4	100	86.399	Mus_spretus
ENSSDUG00000005388	-	95	86.973	ENSMPUG00000005711	SMARCA4	99	86.111	Mustela_putorius_furo
ENSSDUG00000005388	-	95	87.035	ENSMLUG00000004491	-	99	86.403	Myotis_lucifugus
ENSSDUG00000005388	-	95	86.646	ENSNGAG00000021852	Smarca4	99	86.121	Nannospalax_galili
ENSSDUG00000005388	-	93	88.667	ENSNBRG00000018865	-	99	93.444	Neolamprologus_brichardi
ENSSDUG00000005388	-	98	81.636	ENSNBRG00000011457	smarca4a	96	85.881	Neolamprologus_brichardi
ENSSDUG00000005388	-	99	80.760	ENSNLEG00000012389	SMARCA4	94	82.991	Nomascus_leucogenys
ENSSDUG00000005388	-	80	89.655	ENSOPRG00000000885	-	76	89.655	Ochotona_princeps
ENSSDUG00000005388	-	98	82.814	ENSODEG00000017127	SMARCA4	99	83.701	Octodon_degus
ENSSDUG00000005388	-	100	84.152	ENSONIG00000008196	smarca4a	99	87.306	Oreochromis_niloticus
ENSSDUG00000005388	-	100	96.665	ENSONIG00000018040	-	99	95.726	Oreochromis_niloticus
ENSSDUG00000005388	-	99	78.669	ENSOCUG00000001787	SMARCA4	98	80.262	Oryctolagus_cuniculus
ENSSDUG00000005388	-	92	84.930	ENSORLG00000015452	smarca4a	99	86.078	Oryzias_latipes
ENSSDUG00000005388	-	95	94.152	ENSORLG00000003955	-	99	93.301	Oryzias_latipes
ENSSDUG00000005388	-	92	84.738	ENSORLG00020004611	smarca4a	99	86.273	Oryzias_latipes_hni
ENSSDUG00000005388	-	95	94.156	ENSORLG00020009728	-	99	93.427	Oryzias_latipes_hni
ENSSDUG00000005388	-	92	84.738	ENSORLG00015016560	smarca4a	99	85.954	Oryzias_latipes_hsok
ENSSDUG00000005388	-	98	93.538	ENSORLG00015007739	-	99	92.875	Oryzias_latipes_hsok
ENSSDUG00000005388	-	95	94.798	ENSOMEG00000016626	-	99	94.089	Oryzias_melastigma
ENSSDUG00000005388	-	98	82.827	ENSOMEG00000007486	smarca4a	99	86.364	Oryzias_melastigma
ENSSDUG00000005388	-	93	81.567	ENSOGAG00000016148	SMARCA4	100	84.704	Otolemur_garnettii
ENSSDUG00000005388	-	98	83.229	ENSOARG00000017454	SMARCA4	94	86.701	Ovis_aries
ENSSDUG00000005388	-	95	86.849	ENSPPAG00000043191	SMARCA4	99	86.049	Pan_paniscus
ENSSDUG00000005388	-	95	86.989	ENSPPRG00000000064	SMARCA4	99	86.128	Panthera_pardus
ENSSDUG00000005388	-	91	87.440	ENSPTIG00000017447	SMARCA4	99	80.593	Panthera_tigris_altaica
ENSSDUG00000005388	-	95	86.849	ENSPTRG00000010488	SMARCA4	99	86.049	Pan_troglodytes
ENSSDUG00000005388	-	98	84.467	ENSPANG00000011042	SMARCA4	98	86.156	Papio_anubis
ENSSDUG00000005388	-	98	87.414	ENSPKIG00000007770	SMARCA4	99	87.277	Paramormyrops_kingsleyae
ENSSDUG00000005388	-	96	85.906	ENSPKIG00000010087	-	96	87.099	Paramormyrops_kingsleyae
ENSSDUG00000005388	-	82	82.658	ENSPSIG00000005547	SMARCA4	99	79.735	Pelodiscus_sinensis
ENSSDUG00000005388	-	95	86.555	ENSPEMG00000020389	Smarca4	99	85.697	Peromyscus_maniculatus_bairdii
ENSSDUG00000005388	-	95	87.019	ENSPCIG00000017138	SMARCA4	99	86.218	Phascolarctos_cinereus
ENSSDUG00000005388	-	98	95.104	ENSPFOG00000012930	-	99	93.803	Poecilia_formosa
ENSSDUG00000005388	-	98	83.282	ENSPFOG00000007892	smarca4a	99	85.071	Poecilia_formosa
ENSSDUG00000005388	-	98	83.468	ENSPLAG00000014294	smarca4a	99	85.256	Poecilia_latipinna
ENSSDUG00000005388	-	80	97.615	ENSPLAG00000018616	-	99	94.626	Poecilia_latipinna
ENSSDUG00000005388	-	98	83.344	ENSPMEG00000003725	smarca4a	96	85.824	Poecilia_mexicana
ENSSDUG00000005388	-	98	94.539	ENSPMEG00000008929	-	99	92.840	Poecilia_mexicana
ENSSDUG00000005388	-	98	95.289	ENSPREG00000014823	-	98	93.723	Poecilia_reticulata
ENSSDUG00000005388	-	98	80.663	ENSPREG00000014608	smarca4a	99	84.800	Poecilia_reticulata
ENSSDUG00000005388	-	98	82.678	ENSPPYG00000009568	SMARCA4	99	83.848	Pongo_abelii
ENSSDUG00000005388	-	78	90.110	ENSPCAG00000014054	SMARCA4	73	89.888	Procavia_capensis
ENSSDUG00000005388	-	95	86.911	ENSPCOG00000023011	SMARCA4	99	85.943	Propithecus_coquereli
ENSSDUG00000005388	-	91	82.018	ENSPVAG00000007787	SMARCA4	94	80.218	Pteropus_vampyrus
ENSSDUG00000005388	-	93	93.487	ENSPNYG00000023995	-	99	93.614	Pundamilia_nyererei
ENSSDUG00000005388	-	98	84.211	ENSPNYG00000000717	smarca4a	96	86.987	Pundamilia_nyererei
ENSSDUG00000005388	-	98	80.690	ENSPNAG00000024136	smarca4a	99	83.211	Pygocentrus_nattereri
ENSSDUG00000005388	-	98	87.797	ENSPNAG00000006636	-	93	90.416	Pygocentrus_nattereri
ENSSDUG00000005388	-	95	86.663	ENSRNOG00000009271	Smarca4	99	85.802	Rattus_norvegicus
ENSSDUG00000005388	-	98	84.279	ENSRBIG00000038696	SMARCA4	98	86.049	Rhinopithecus_bieti
ENSSDUG00000005388	-	98	84.342	ENSRROG00000045509	SMARCA4	99	86.111	Rhinopithecus_roxellana
ENSSDUG00000005388	-	95	86.787	ENSSBOG00000026896	SMARCA4	99	86.111	Saimiri_boliviensis_boliviensis
ENSSDUG00000005388	-	95	86.708	ENSSHAG00000001642	SMARCA4	99	86.032	Sarcophilus_harrisii
ENSSDUG00000005388	-	98	86.742	ENSSFOG00015013823	smarca4	99	87.252	Scleropages_formosus
ENSSDUG00000005388	-	87	91.736	ENSSFOG00015009921	-	92	91.073	Scleropages_formosus
ENSSDUG00000005388	-	100	84.029	ENSSMAG00000003200	smarca4a	99	84.681	Scophthalmus_maximus
ENSSDUG00000005388	-	100	95.062	ENSSMAG00000014082	-	98	94.763	Scophthalmus_maximus
ENSSDUG00000005388	-	99	93.878	ENSSLDG00000023663	-	99	98.340	Seriola_lalandi_dorsalis
ENSSDUG00000005388	-	98	83.303	ENSSLDG00000024486	smarca4a	100	85.665	Seriola_lalandi_dorsalis
ENSSDUG00000005388	-	59	97.516	ENSSARG00000013477	SMARCA4	82	97.516	Sorex_araneus
ENSSDUG00000005388	-	98	80.561	ENSSPUG00000004558	SMARCA4	98	82.853	Sphenodon_punctatus
ENSSDUG00000005388	-	100	97.850	ENSSPAG00000012533	-	97	97.850	Stegastes_partitus
ENSSDUG00000005388	-	98	82.750	ENSSPAG00000004248	smarca4a	99	85.278	Stegastes_partitus
ENSSDUG00000005388	-	95	87.051	ENSSSCG00000013629	SMARCA4	99	86.190	Sus_scrofa
ENSSDUG00000005388	-	52	84.670	ENSTGUG00000015488	-	99	84.688	Taeniopygia_guttata
ENSSDUG00000005388	-	99	92.517	ENSTRUG00000001378	SMARCA4	99	92.517	Takifugu_rubripes
ENSSDUG00000005388	-	93	79.349	ENSTRUG00000004885	smarca4a	100	81.509	Takifugu_rubripes
ENSSDUG00000005388	-	73	83.911	ENSTNIG00000004859	-	100	83.746	Tetraodon_nigroviridis
ENSSDUG00000005388	-	99	90.977	ENSTNIG00000004536	SMARCA4	99	92.782	Tetraodon_nigroviridis
ENSSDUG00000005388	-	52	98.649	ENSTBEG00000000707	-	52	98.571	Tupaia_belangeri
ENSSDUG00000005388	-	98	81.857	ENSTTRG00000009519	SMARCA4	99	82.677	Tursiops_truncatus
ENSSDUG00000005388	-	95	87.035	ENSUAMG00000014661	SMARCA4	99	86.173	Ursus_americanus
ENSSDUG00000005388	-	95	89.092	ENSUMAG00000022005	SMARCA4	98	90.433	Ursus_maritimus
ENSSDUG00000005388	-	99	84.433	ENSVVUG00000017820	SMARCA4	96	86.173	Vulpes_vulpes
ENSSDUG00000005388	-	99	79.027	ENSXETG00000009355	smarca4	99	81.016	Xenopus_tropicalis
ENSSDUG00000005388	-	96	90.600	ENSXCOG00000013494	-	99	90.724	Xiphophorus_couchianus
ENSSDUG00000005388	-	95	85.290	ENSXMAG00000006321	smarca4a	99	84.479	Xiphophorus_maculatus
ENSSDUG00000005388	-	98	94.849	ENSXMAG00000007030	-	99	94.357	Xiphophorus_maculatus