EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000005682 (Gene tree)
Gene ID: 111232505
Gene Symbol: upf3b
Alias: zgc:174674|zgc:66390
Full Name: UPF3B%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 3718 bases
Position: chrBDQW01000331.1:8733578-8737295
Accession: 111232505
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000007743	Smg4_UPF3	PF03467.15	9.7e-54	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000007884	-	2555	XM_022760063	ENSSDUP00000007743	461 (aa)	XP_022615784	UPI000BBE13A4

Gene Model

Click here to download ENSSDUG00000005682's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03013	RNA transport	KEGG
sdu03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000005682's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000005682	upf3b	92	45.972	ENSSDUG00000009680	upf3a	55	77.528

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000005682	upf3b	97	52.052	ENSG00000125351	UPF3B	96	66.667	Homo_sapiens
ENSSDUG00000005682	upf3b	100	87.852	ENSAPOG00000012775	upf3b	100	85.900	Acanthochromis_polyacanthus
ENSSDUG00000005682	upf3b	97	52.052	ENSAMEG00000000163	UPF3B	96	51.082	Ailuropoda_melanoleuca
ENSSDUG00000005682	upf3b	100	82.366	ENSACIG00000013582	upf3b	100	85.591	Amphilophus_citrinellus
ENSSDUG00000005682	upf3b	100	86.334	ENSAOCG00000000706	upf3b	100	85.033	Amphiprion_ocellaris
ENSSDUG00000005682	upf3b	100	86.768	ENSAPEG00000005545	upf3b	100	85.466	Amphiprion_percula
ENSSDUG00000005682	upf3b	100	88.817	ENSATEG00000018742	upf3b	100	87.957	Anabas_testudineus
ENSSDUG00000005682	upf3b	89	50.839	ENSACAG00000001540	UPF3A	53	63.203	Anolis_carolinensis
ENSSDUG00000005682	upf3b	98	58.723	ENSACAG00000003625	UPF3B	98	54.043	Anolis_carolinensis
ENSSDUG00000005682	upf3b	97	52.473	ENSANAG00000021894	-	97	66.507	Aotus_nancymaae
ENSSDUG00000005682	upf3b	97	52.665	ENSANAG00000025598	-	93	47.333	Aotus_nancymaae
ENSSDUG00000005682	upf3b	100	87.202	ENSACLG00000001649	upf3b	100	86.334	Astatotilapia_calliptera
ENSSDUG00000005682	upf3b	66	83.398	ENSAMXG00000000199	upf3b	98	83.398	Astyanax_mexicanus
ENSSDUG00000005682	upf3b	56	66.788	ENSBTAG00000035615	UPF3B	68	66.351	Bos_taurus
ENSSDUG00000005682	upf3b	97	51.836	ENSCJAG00000004975	UPF3B	97	66.029	Callithrix_jacchus
ENSSDUG00000005682	upf3b	97	54.428	ENSCAFG00000018426	UPF3B	98	54.506	Canis_familiaris
ENSSDUG00000005682	upf3b	97	52.700	ENSCAFG00020004074	UPF3B	96	52.790	Canis_lupus_dingo
ENSSDUG00000005682	upf3b	92	39.671	ENSCHIG00000011454	-	50	47.186	Capra_hircus
ENSSDUG00000005682	upf3b	97	51.464	ENSCHIG00000018011	-	88	52.347	Capra_hircus
ENSSDUG00000005682	upf3b	97	51.674	ENSCHIG00000000247	-	96	50.526	Capra_hircus
ENSSDUG00000005682	upf3b	97	53.763	ENSTSYG00000014690	UPF3B	96	61.395	Carlito_syrichta
ENSSDUG00000005682	upf3b	93	37.832	ENSCCAG00000029813	-	51	61.039	Cebus_capucinus
ENSSDUG00000005682	upf3b	97	52.052	ENSCATG00000017506	UPF3B	97	66.507	Cercocebus_atys
ENSSDUG00000005682	upf3b	68	61.446	ENSCLAG00000003260	UPF3B	96	51.732	Chinchilla_lanigera
ENSSDUG00000005682	upf3b	97	50.630	ENSCSAG00000018348	UPF3B	96	49.474	Chlorocebus_sabaeus
ENSSDUG00000005682	upf3b	94	58.559	ENSCPBG00000020685	UPF3B	93	57.240	Chrysemys_picta_bellii
ENSSDUG00000005682	upf3b	56	66.544	ENSCANG00000029220	UPF3B	66	66.351	Colobus_angolensis_palliatus
ENSSDUG00000005682	upf3b	94	52.954	ENSCGRG00001006858	-	83	57.037	Cricetulus_griseus_chok1gshd
ENSSDUG00000005682	upf3b	68	56.024	ENSCGRG00001013643	-	77	58.042	Cricetulus_griseus_chok1gshd
ENSSDUG00000005682	upf3b	86	57.178	ENSCGRG00000007627	Upf3b	93	56.858	Cricetulus_griseus_crigri
ENSSDUG00000005682	upf3b	99	77.292	ENSCSEG00000002046	upf3b	99	77.500	Cynoglossus_semilaevis
ENSSDUG00000005682	upf3b	100	81.169	ENSCVAG00000005030	upf3b	100	79.870	Cyprinodon_variegatus
ENSSDUG00000005682	upf3b	94	74.541	ENSDARG00000000489	upf3b	99	69.957	Danio_rerio
ENSSDUG00000005682	upf3b	92	51.147	ENSDARG00000069297	upf3a	50	65.126	Danio_rerio
ENSSDUG00000005682	upf3b	97	51.261	ENSDNOG00000008665	UPF3B	96	50.316	Dasypus_novemcinctus
ENSSDUG00000005682	upf3b	97	54.292	ENSDORG00000006077	Upf3b	93	54.444	Dipodomys_ordii
ENSSDUG00000005682	upf3b	97	50.540	ENSEASG00005012919	UPF3B	96	50.216	Equus_asinus_asinus
ENSSDUG00000005682	upf3b	97	50.540	ENSECAG00000016947	UPF3B	96	50.216	Equus_caballus
ENSSDUG00000005682	upf3b	99	69.421	ENSELUG00000020389	upf3b	100	71.959	Esox_lucius
ENSSDUG00000005682	upf3b	88	51.691	ENSELUG00000011050	upf3a	50	65.272	Esox_lucius
ENSSDUG00000005682	upf3b	97	55.224	ENSFCAG00000004388	UPF3B	83	58.519	Felis_catus
ENSSDUG00000005682	upf3b	97	56.998	ENSFALG00000001569	UPF3B	94	56.394	Ficedula_albicollis
ENSSDUG00000005682	upf3b	97	56.587	ENSFDAG00000018869	UPF3B	96	54.978	Fukomys_damarensis
ENSSDUG00000005682	upf3b	100	79.526	ENSFHEG00000017895	upf3b	100	80.172	Fundulus_heteroclitus
ENSSDUG00000005682	upf3b	100	70.613	ENSGMOG00000001621	upf3b	100	71.247	Gadus_morhua
ENSSDUG00000005682	upf3b	99	57.083	ENSGALG00000008618	UPF3B	99	56.394	Gallus_gallus
ENSSDUG00000005682	upf3b	100	78.788	ENSGAFG00000000829	upf3b	100	79.004	Gambusia_affinis
ENSSDUG00000005682	upf3b	100	78.710	ENSGACG00000017435	upf3b	94	88.672	Gasterosteus_aculeatus
ENSSDUG00000005682	upf3b	94	62.022	ENSGAGG00000001219	UPF3B	94	61.312	Gopherus_agassizii
ENSSDUG00000005682	upf3b	97	52.052	ENSGGOG00000023995	UPF3B	96	50.866	Gorilla_gorilla
ENSSDUG00000005682	upf3b	100	86.768	ENSHBUG00000017393	upf3b	100	85.900	Haplochromis_burtoni
ENSSDUG00000005682	upf3b	97	51.620	ENSHGLG00000019582	-	96	50.433	Heterocephalus_glaber_female
ENSSDUG00000005682	upf3b	69	55.655	ENSHGLG00000011189	-	54	67.100	Heterocephalus_glaber_female
ENSSDUG00000005682	upf3b	72	55.429	ENSHGLG00100001889	-	55	67.100	Heterocephalus_glaber_male
ENSSDUG00000005682	upf3b	97	51.620	ENSHGLG00100002042	-	60	65.714	Heterocephalus_glaber_male
ENSSDUG00000005682	upf3b	100	75.267	ENSHCOG00000017004	upf3b	100	75.053	Hippocampus_comes
ENSSDUG00000005682	upf3b	100	71.734	ENSIPUG00000019249	upf3b	100	70.450	Ictalurus_punctatus
ENSSDUG00000005682	upf3b	97	52.052	ENSSTOG00000001101	UPF3B	59	66.786	Ictidomys_tridecemlineatus
ENSSDUG00000005682	upf3b	68	59.337	ENSJJAG00000000053	Upf3b	83	56.359	Jaculus_jaculus
ENSSDUG00000005682	upf3b	100	82.646	ENSKMAG00000020300	upf3b	100	81.996	Kryptolebias_marmoratus
ENSSDUG00000005682	upf3b	60	88.448	ENSLBEG00000028689	upf3b	59	88.806	Labrus_bergylta
ENSSDUG00000005682	upf3b	100	62.076	ENSLACG00000008691	UPF3B	100	62.712	Latimeria_chalumnae
ENSSDUG00000005682	upf3b	100	65.086	ENSLOCG00000015238	upf3b	100	65.733	Lepisosteus_oculatus
ENSSDUG00000005682	upf3b	91	54.079	ENSLOCG00000002665	upf3a	87	52.009	Lepisosteus_oculatus
ENSSDUG00000005682	upf3b	97	52.361	ENSLAFG00000001267	UPF3B	96	51.515	Loxodonta_africana
ENSSDUG00000005682	upf3b	97	51.836	ENSMFAG00000045414	UPF3B	97	66.507	Macaca_fascicularis
ENSSDUG00000005682	upf3b	87	49.140	ENSMMUG00000007449	UPF3A	50	63.362	Macaca_mulatta
ENSSDUG00000005682	upf3b	97	51.836	ENSMMUG00000020222	UPF3B	97	66.507	Macaca_mulatta
ENSSDUG00000005682	upf3b	97	51.836	ENSMNEG00000039794	UPF3B	97	66.507	Macaca_nemestrina
ENSSDUG00000005682	upf3b	97	52.052	ENSMLEG00000010999	UPF3B	97	66.507	Mandrillus_leucophaeus
ENSSDUG00000005682	upf3b	87	50.123	ENSMLEG00000014726	UPF3A	52	53.017	Mandrillus_leucophaeus
ENSSDUG00000005682	upf3b	100	87.202	ENSMZEG00005007871	upf3b	100	86.334	Maylandia_zebra
ENSSDUG00000005682	upf3b	85	50.000	ENSMGAG00000014837	UPF3A	51	63.551	Meleagris_gallopavo
ENSSDUG00000005682	upf3b	83	59.126	ENSMGAG00000007728	UPF3B	98	57.584	Meleagris_gallopavo
ENSSDUG00000005682	upf3b	94	51.435	ENSMAUG00000008705	Upf3b	83	55.112	Mesocricetus_auratus
ENSSDUG00000005682	upf3b	56	66.788	ENSMICG00000001743	UPF3B	85	66.176	Microcebus_murinus
ENSSDUG00000005682	upf3b	97	50.833	ENSMOCG00000017893	Upf3b	83	54.699	Microtus_ochrogaster
ENSSDUG00000005682	upf3b	100	82.035	ENSMMOG00000004183	upf3b	100	80.952	Mola_mola
ENSSDUG00000005682	upf3b	92	50.808	ENSMODG00000003159	UPF3A	53	65.106	Monodelphis_domestica
ENSSDUG00000005682	upf3b	90	60.952	ENSMODG00000010232	UPF3B	93	58.750	Monodelphis_domestica
ENSSDUG00000005682	upf3b	100	84.516	ENSMALG00000008042	upf3b	100	84.731	Monopterus_albus
ENSSDUG00000005682	upf3b	94	53.524	MGP_CAROLIEiJ_G0032999	Upf3b	83	56.468	Mus_caroli
ENSSDUG00000005682	upf3b	94	53.084	ENSMUSG00000036572	Upf3b	83	56.716	Mus_musculus
ENSSDUG00000005682	upf3b	94	53.524	MGP_PahariEiJ_G0031543	Upf3b	83	56.468	Mus_pahari
ENSSDUG00000005682	upf3b	94	53.084	MGP_SPRETEiJ_G0034152	Upf3b	83	56.716	Mus_spretus
ENSSDUG00000005682	upf3b	97	53.763	ENSMPUG00000001531	UPF3B	98	54.860	Mustela_putorius_furo
ENSSDUG00000005682	upf3b	87	46.929	ENSMLUG00000015905	UPF3A	54	64.017	Myotis_lucifugus
ENSSDUG00000005682	upf3b	97	55.914	ENSMLUG00000010821	UPF3B	83	59.102	Myotis_lucifugus
ENSSDUG00000005682	upf3b	94	54.967	ENSNGAG00000008231	Upf3b	83	57.107	Nannospalax_galili
ENSSDUG00000005682	upf3b	92	54.118	ENSNLEG00000014897	UPF3B	86	52.785	Nomascus_leucogenys
ENSSDUG00000005682	upf3b	97	54.230	ENSODEG00000002186	-	65	65.836	Octodon_degus
ENSSDUG00000005682	upf3b	100	85.622	ENSONIG00000002536	upf3b	100	85.408	Oreochromis_niloticus
ENSSDUG00000005682	upf3b	82	40.625	ENSOANG00000006985	-	55	53.846	Ornithorhynchus_anatinus
ENSSDUG00000005682	upf3b	97	50.208	ENSOCUG00000010213	UPF3B	86	51.643	Oryctolagus_cuniculus
ENSSDUG00000005682	upf3b	100	77.440	ENSORLG00000001026	upf3b	100	76.356	Oryzias_latipes
ENSSDUG00000005682	upf3b	100	77.007	ENSORLG00020003758	upf3b	100	77.432	Oryzias_latipes_hni
ENSSDUG00000005682	upf3b	100	76.790	ENSORLG00015012954	upf3b	100	75.705	Oryzias_latipes_hsok
ENSSDUG00000005682	upf3b	88	51.699	ENSOMEG00000014425	upf3a	50	66.946	Oryzias_melastigma
ENSSDUG00000005682	upf3b	100	77.223	ENSOMEG00000014736	upf3b	100	76.356	Oryzias_melastigma
ENSSDUG00000005682	upf3b	97	50.862	ENSOGAG00000033003	-	88	50.966	Otolemur_garnettii
ENSSDUG00000005682	upf3b	97	51.620	ENSOGAG00000004643	-	96	50.433	Otolemur_garnettii
ENSSDUG00000005682	upf3b	97	51.351	ENSOARG00000016051	-	96	50.209	Ovis_aries
ENSSDUG00000005682	upf3b	97	52.052	ENSPPAG00000040390	UPF3B	96	50.866	Pan_paniscus
ENSSDUG00000005682	upf3b	97	52.473	ENSPPRG00000023536	UPF3B	83	54.613	Panthera_pardus
ENSSDUG00000005682	upf3b	97	51.033	ENSPTIG00000015264	UPF3B	83	57.349	Panthera_tigris_altaica
ENSSDUG00000005682	upf3b	97	52.052	ENSPTRG00000022228	UPF3B	96	50.866	Pan_troglodytes
ENSSDUG00000005682	upf3b	97	52.052	ENSPANG00000000900	UPF3B	97	66.507	Papio_anubis
ENSSDUG00000005682	upf3b	90	48.458	ENSPKIG00000004422	upf3a	50	58.159	Paramormyrops_kingsleyae
ENSSDUG00000005682	upf3b	99	68.750	ENSPKIG00000019226	upf3b	93	86.111	Paramormyrops_kingsleyae
ENSSDUG00000005682	upf3b	56	63.498	ENSPSIG00000005833	UPF3B	67	76.190	Pelodiscus_sinensis
ENSSDUG00000005682	upf3b	88	52.246	ENSPSIG00000007468	UPF3A	54	64.655	Pelodiscus_sinensis
ENSSDUG00000005682	upf3b	57	86.641	ENSPMGG00000016067	upf3b	95	86.641	Periophthalmus_magnuspinnatus
ENSSDUG00000005682	upf3b	94	53.187	ENSPEMG00000012352	Upf3b	83	55.583	Peromyscus_maniculatus_bairdii
ENSSDUG00000005682	upf3b	89	60.194	ENSPCIG00000028914	UPF3B	83	56.500	Phascolarctos_cinereus
ENSSDUG00000005682	upf3b	80	52.766	ENSPCIG00000019590	-	63	69.655	Phascolarctos_cinereus
ENSSDUG00000005682	upf3b	100	79.221	ENSPLAG00000005105	upf3b	100	79.221	Poecilia_latipinna
ENSSDUG00000005682	upf3b	92	50.114	ENSPLAG00000011960	upf3a	51	77.528	Poecilia_latipinna
ENSSDUG00000005682	upf3b	100	79.221	ENSPLAG00000019922	upf3b	100	79.221	Poecilia_latipinna
ENSSDUG00000005682	upf3b	100	79.004	ENSPMEG00000023532	upf3b	100	79.004	Poecilia_mexicana
ENSSDUG00000005682	upf3b	56	66.300	ENSPPYG00000020675	-	63	66.351	Pongo_abelii
ENSSDUG00000005682	upf3b	98	49.795	ENSPCAG00000009464	UPF3B	87	50.805	Procavia_capensis
ENSSDUG00000005682	upf3b	97	53.617	ENSPCOG00000021960	UPF3B	93	52.222	Propithecus_coquereli
ENSSDUG00000005682	upf3b	97	46.234	ENSPVAG00000014075	UPF3B	50	58.607	Pteropus_vampyrus
ENSSDUG00000005682	upf3b	100	86.985	ENSPNYG00000009846	upf3b	100	85.466	Pundamilia_nyererei
ENSSDUG00000005682	upf3b	100	74.090	ENSPNAG00000021528	upf3b	100	85.271	Pygocentrus_nattereri
ENSSDUG00000005682	upf3b	94	53.084	ENSRNOG00000039994	Upf3b	83	56.716	Rattus_norvegicus
ENSSDUG00000005682	upf3b	87	49.510	ENSRBIG00000034007	UPF3A	51	63.362	Rhinopithecus_bieti
ENSSDUG00000005682	upf3b	81	51.070	ENSRBIG00000037219	UPF3B	95	50.133	Rhinopithecus_bieti
ENSSDUG00000005682	upf3b	97	52.052	ENSRROG00000041031	UPF3B	97	66.507	Rhinopithecus_roxellana
ENSSDUG00000005682	upf3b	97	52.484	ENSSBOG00000019740	UPF3B	99	66.029	Saimiri_boliviensis_boliviensis
ENSSDUG00000005682	upf3b	93	50.230	ENSSHAG00000009895	UPF3A	54	64.407	Sarcophilus_harrisii
ENSSDUG00000005682	upf3b	98	56.108	ENSSHAG00000008634	UPF3B	99	54.583	Sarcophilus_harrisii
ENSSDUG00000005682	upf3b	100	69.612	ENSSFOG00015005614	upf3b	100	69.330	Scleropages_formosus
ENSSDUG00000005682	upf3b	100	84.549	ENSSMAG00000012913	upf3b	100	92.969	Scophthalmus_maximus
ENSSDUG00000005682	upf3b	100	99.132	ENSSLDG00000003130	upf3b	100	99.132	Seriola_lalandi_dorsalis
ENSSDUG00000005682	upf3b	86	52.555	ENSSARG00000004147	UPF3B	55	70.000	Sorex_araneus
ENSSDUG00000005682	upf3b	98	57.676	ENSSPUG00000013082	UPF3B	99	55.809	Sphenodon_punctatus
ENSSDUG00000005682	upf3b	99	87.118	ENSSPAG00000009989	upf3b	99	87.336	Stegastes_partitus
ENSSDUG00000005682	upf3b	97	52.239	ENSSSCG00000012617	UPF3B	86	53.269	Sus_scrofa
ENSSDUG00000005682	upf3b	89	44.337	ENSSSCG00000024679	UPF3A	55	62.288	Sus_scrofa
ENSSDUG00000005682	upf3b	87	53.171	ENSTGUG00000009493	UPF3A	65	59.176	Taeniopygia_guttata
ENSSDUG00000005682	upf3b	90	62.110	ENSTGUG00000003413	UPF3B	96	62.110	Taeniopygia_guttata
ENSSDUG00000005682	upf3b	100	79.610	ENSTRUG00000010645	upf3b	100	78.525	Takifugu_rubripes
ENSSDUG00000005682	upf3b	100	69.612	ENSTNIG00000015763	upf3b	100	65.517	Tetraodon_nigroviridis
ENSSDUG00000005682	upf3b	94	47.639	ENSTBEG00000003229	UPF3B	56	56.410	Tupaia_belangeri
ENSSDUG00000005682	upf3b	97	54.604	ENSUAMG00000024565	UPF3B	96	53.219	Ursus_americanus
ENSSDUG00000005682	upf3b	89	52.771	ENSUMAG00000002150	UPF3B	87	49.637	Ursus_maritimus
ENSSDUG00000005682	upf3b	84	51.493	ENSVPAG00000009971	UPF3B	95	50.374	Vicugna_pacos
ENSSDUG00000005682	upf3b	97	52.484	ENSVVUG00000011594	UPF3B	97	66.507	Vulpes_vulpes
ENSSDUG00000005682	upf3b	94	53.620	ENSXETG00000007440	upf3b	85	77.041	Xenopus_tropicalis
ENSSDUG00000005682	upf3b	100	72.078	ENSXCOG00000016586	upf3b	98	90.816	Xiphophorus_couchianus
ENSSDUG00000005682	upf3b	100	78.355	ENSXMAG00000013680	upf3b	100	78.571	Xiphophorus_maculatus