EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000005719 (Gene tree)
Gene ID: 111223760
Gene Symbol: si:dkey-16l2.16
Alias: -
Full Name: ras-related protein Rab-35-like
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 7601 bases
Position: chrBDQW01000113.1:19681-27281
Accession: 111223760
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000007792	MMR_HSR1	PF01926.23	3.4e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000007934	-	2653	XM_022748023	ENSSDUP00000007792	209 (aa)	XP_022603744	UPI000BBE79AD
ENSSDUT00000007959	-	630	-	ENSSDUP00000007817	209 (aa)	-	-

Gene Model

Click here to download ENSSDUG00000005719's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu04144	Endocytosis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000005719's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000005719	si:dkey-16l2.16	77	35.802	ENSSDUG00000017779	kras	88	33.929
ENSSDUG00000005719	si:dkey-16l2.16	82	34.091	ENSSDUG00000014082	si:cabz01085950.1	83	34.132
ENSSDUG00000005719	si:dkey-16l2.16	99	70.531	ENSSDUG00000004950	rab35b	86	79.191
ENSSDUG00000005719	si:dkey-16l2.16	98	40.191	ENSSDUG00000013558	rab11bb	80	44.253
ENSSDUG00000005719	si:dkey-16l2.16	77	61.728	ENSSDUG00000004445	zgc:171927	76	61.728
ENSSDUG00000005719	si:dkey-16l2.16	55	30.508	ENSSDUG00000010935	arl4d	58	30.508
ENSSDUG00000005719	si:dkey-16l2.16	78	36.686	ENSSDUG00000009122	rheb	88	36.686
ENSSDUG00000005719	si:dkey-16l2.16	95	30.348	ENSSDUG00000006618	RAB17	70	32.919
ENSSDUG00000005719	si:dkey-16l2.16	78	37.500	ENSSDUG00000005037	-	78	37.500
ENSSDUG00000005719	si:dkey-16l2.16	82	42.857	ENSSDUG00000011851	rab42a	80	42.857
ENSSDUG00000005719	si:dkey-16l2.16	98	38.942	ENSSDUG00000006278	rab11al	81	43.678
ENSSDUG00000005719	si:dkey-16l2.16	99	50.242	ENSSDUG00000004698	rab1ba	81	59.259
ENSSDUG00000005719	si:dkey-16l2.16	77	40.000	ENSSDUG00000009251	rab6bb	79	38.788
ENSSDUG00000005719	si:dkey-16l2.16	87	47.802	ENSSDUG00000006307	-	85	50.625
ENSSDUG00000005719	si:dkey-16l2.16	77	33.129	ENSSDUG00000010675	si:ch73-116o1.2	74	32.515
ENSSDUG00000005719	si:dkey-16l2.16	80	41.667	ENSSDUG00000009835	rab5aa	78	41.667
ENSSDUG00000005719	si:dkey-16l2.16	82	44.571	ENSSDUG00000003823	rab18a	84	45.087
ENSSDUG00000005719	si:dkey-16l2.16	73	32.258	ENSSDUG00000020340	-	74	32.258
ENSSDUG00000005719	si:dkey-16l2.16	55	30.172	ENSSDUG00000013976	arl3	61	30.172
ENSSDUG00000005719	si:dkey-16l2.16	80	30.000	ENSSDUG00000023163	rras2	83	30.769
ENSSDUG00000005719	si:dkey-16l2.16	76	45.283	ENSSDUG00000013724	rab2a	78	45.513
ENSSDUG00000005719	si:dkey-16l2.16	69	48.649	ENSSDUG00000001791	rab33ba	61	48.649
ENSSDUG00000005719	si:dkey-16l2.16	76	61.250	ENSSDUG00000016888	rab1ab	72	62.025
ENSSDUG00000005719	si:dkey-16l2.16	95	32.195	ENSSDUG00000016760	rab34b	52	34.337
ENSSDUG00000005719	si:dkey-16l2.16	55	31.356	ENSSDUG00000000586	arl4aa	59	31.356
ENSSDUG00000005719	si:dkey-16l2.16	78	44.512	ENSSDUG00000013050	-	80	42.442
ENSSDUG00000005719	si:dkey-16l2.16	96	35.821	ENSSDUG00000023008	rab5c	76	39.881
ENSSDUG00000005719	si:dkey-16l2.16	80	39.306	ENSSDUG00000019738	si:dkey-13a21.4	84	39.306
ENSSDUG00000005719	si:dkey-16l2.16	97	33.493	ENSSDUG00000006543	RAB29	84	38.095
ENSSDUG00000005719	si:dkey-16l2.16	93	42.512	ENSSDUG00000004633	RAB15	82	46.552
ENSSDUG00000005719	si:dkey-16l2.16	78	59.756	ENSSDUG00000022535	RAB1A	79	61.250
ENSSDUG00000005719	si:dkey-16l2.16	81	34.463	ENSSDUG00000016858	-	88	34.524
ENSSDUG00000005719	si:dkey-16l2.16	98	41.827	ENSSDUG00000002580	rab11a	96	40.777
ENSSDUG00000005719	si:dkey-16l2.16	75	44.304	ENSSDUG00000009735	rab25a	76	44.304
ENSSDUG00000005719	si:dkey-16l2.16	85	42.778	ENSSDUG00000008151	zgc:101559	73	44.118
ENSSDUG00000005719	si:dkey-16l2.16	82	35.057	ENSSDUG00000019086	hrasb	89	35.673
ENSSDUG00000005719	si:dkey-16l2.16	98	39.713	ENSSDUG00000002965	rab11ba	80	44.253
ENSSDUG00000005719	si:dkey-16l2.16	53	34.821	ENSSDUG00000017824	-	86	34.677
ENSSDUG00000005719	si:dkey-16l2.16	78	36.310	ENSSDUG00000003386	rab9a	83	36.310
ENSSDUG00000005719	si:dkey-16l2.16	74	34.161	ENSSDUG00000003036	dnajc27	59	34.161
ENSSDUG00000005719	si:dkey-16l2.16	99	34.762	ENSSDUG00000013496	-	74	40.260
ENSSDUG00000005719	si:dkey-16l2.16	90	43.299	ENSSDUG00000013968	rab33a	72	45.930
ENSSDUG00000005719	si:dkey-16l2.16	83	33.520	ENSSDUG00000007311	rhebl1	90	33.526
ENSSDUG00000005719	si:dkey-16l2.16	78	47.273	ENSSDUG00000014091	-	76	48.447
ENSSDUG00000005719	si:dkey-16l2.16	98	40.670	ENSSDUG00000002934	-	80	44.253
ENSSDUG00000005719	si:dkey-16l2.16	86	43.407	ENSSDUG00000005960	rab18b	80	46.951
ENSSDUG00000005719	si:dkey-16l2.16	77	32.919	ENSSDUG00000023508	rab23	78	33.125
ENSSDUG00000005719	si:dkey-16l2.16	53	34.821	ENSSDUG00000014258	RAP2B	88	34.677
ENSSDUG00000005719	si:dkey-16l2.16	85	31.667	ENSSDUG00000015982	rasd4	80	31.765
ENSSDUG00000005719	si:dkey-16l2.16	95	30.097	ENSSDUG00000014765	rabl2	75	31.609
ENSSDUG00000005719	si:dkey-16l2.16	88	42.781	ENSSDUG00000006260	rab25b	78	47.059
ENSSDUG00000005719	si:dkey-16l2.16	78	39.634	ENSSDUG00000017131	rab22a	83	39.752
ENSSDUG00000005719	si:dkey-16l2.16	61	30.000	ENSSDUG00000020599	-	70	30.000
ENSSDUG00000005719	si:dkey-16l2.16	77	39.634	ENSSDUG00000021882	rab6ba	79	39.634
ENSSDUG00000005719	si:dkey-16l2.16	82	43.878	ENSSDUG00000019885	-	79	43.750
ENSSDUG00000005719	si:dkey-16l2.16	80	38.068	ENSSDUG00000004119	rab36	58	38.068
ENSSDUG00000005719	si:dkey-16l2.16	81	40.698	ENSSDUG00000008505	rab12	71	40.698
ENSSDUG00000005719	si:dkey-16l2.16	95	35.071	ENSSDUG00000010942	rab34a	66	37.714
ENSSDUG00000005719	si:dkey-16l2.16	92	45.361	ENSSDUG00000005627	rab15	82	48.276
ENSSDUG00000005719	si:dkey-16l2.16	85	47.191	ENSSDUG00000013325	rab30	88	47.191
ENSSDUG00000005719	si:dkey-16l2.16	84	37.569	ENSSDUG00000007575	rab9b	88	37.569
ENSSDUG00000005719	si:dkey-16l2.16	79	30.726	ENSSDUG00000015078	rasl11a	69	30.387
ENSSDUG00000005719	si:dkey-16l2.16	78	39.053	ENSSDUG00000008011	-	81	39.053
ENSSDUG00000005719	si:dkey-16l2.16	95	34.000	ENSSDUG00000018970	RAB6B	73	38.961
ENSSDUG00000005719	si:dkey-16l2.16	81	41.279	ENSSDUG00000004551	rab14	80	41.279

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000005719	si:dkey-16l2.16	100	95.694	ENSAPOG00000008263	si:dkey-16l2.16	100	95.694	Acanthochromis_polyacanthus
ENSSDUG00000005719	si:dkey-16l2.16	100	97.129	ENSAOCG00000016825	si:dkey-16l2.16	100	97.129	Amphiprion_ocellaris
ENSSDUG00000005719	si:dkey-16l2.16	100	97.129	ENSAPEG00000006500	si:dkey-16l2.16	100	97.129	Amphiprion_percula
ENSSDUG00000005719	si:dkey-16l2.16	100	96.651	ENSATEG00000019238	si:dkey-16l2.16	100	96.651	Anabas_testudineus
ENSSDUG00000005719	si:dkey-16l2.16	100	95.694	ENSACLG00000018721	si:dkey-16l2.16	100	95.694	Astatotilapia_calliptera
ENSSDUG00000005719	si:dkey-16l2.16	100	94.737	ENSAMXG00000038243	si:dkey-16l2.16	100	94.737	Astyanax_mexicanus
ENSSDUG00000005719	si:dkey-16l2.16	56	96.610	ENSCSEG00000009988	si:dkey-16l2.16	90	96.610	Cynoglossus_semilaevis
ENSSDUG00000005719	si:dkey-16l2.16	100	96.651	ENSCVAG00000003537	si:dkey-16l2.16	100	96.651	Cyprinodon_variegatus
ENSSDUG00000005719	si:dkey-16l2.16	100	92.344	ENSDARG00000037967	si:dkey-16l2.16	99	96.610	Danio_rerio
ENSSDUG00000005719	si:dkey-16l2.16	99	87.019	ENSELUG00000023247	si:dkey-16l2.16	99	85.577	Esox_lucius
ENSSDUG00000005719	si:dkey-16l2.16	58	95.041	ENSFHEG00000000767	si:dkey-16l2.16	78	95.041	Fundulus_heteroclitus
ENSSDUG00000005719	si:dkey-16l2.16	77	84.472	ENSGMOG00000015174	si:dkey-16l2.16	98	84.472	Gadus_morhua
ENSSDUG00000005719	si:dkey-16l2.16	100	90.431	ENSGAFG00000005388	si:dkey-16l2.16	100	90.431	Gambusia_affinis
ENSSDUG00000005719	si:dkey-16l2.16	100	94.737	ENSGACG00000014915	si:dkey-16l2.16	98	94.737	Gasterosteus_aculeatus
ENSSDUG00000005719	si:dkey-16l2.16	100	96.172	ENSHBUG00000019261	si:dkey-16l2.16	100	96.172	Haplochromis_burtoni
ENSSDUG00000005719	si:dkey-16l2.16	100	94.737	ENSHCOG00000006538	si:dkey-16l2.16	100	94.737	Hippocampus_comes
ENSSDUG00000005719	si:dkey-16l2.16	100	92.823	ENSKMAG00000003494	si:dkey-16l2.16	100	92.823	Kryptolebias_marmoratus
ENSSDUG00000005719	si:dkey-16l2.16	100	97.129	ENSLBEG00000007681	si:dkey-16l2.16	100	97.129	Labrus_bergylta
ENSSDUG00000005719	si:dkey-16l2.16	100	97.608	ENSMAMG00000019230	si:dkey-16l2.16	100	97.608	Mastacembelus_armatus
ENSSDUG00000005719	si:dkey-16l2.16	100	95.694	ENSMZEG00005002081	si:dkey-16l2.16	100	95.694	Maylandia_zebra
ENSSDUG00000005719	si:dkey-16l2.16	99	97.087	ENSMMOG00000020140	si:dkey-16l2.16	97	97.087	Mola_mola
ENSSDUG00000005719	si:dkey-16l2.16	100	95.215	ENSMALG00000014727	si:dkey-16l2.16	99	95.215	Monopterus_albus
ENSSDUG00000005719	si:dkey-16l2.16	100	95.694	ENSNBRG00000008930	si:dkey-16l2.16	100	95.694	Neolamprologus_brichardi
ENSSDUG00000005719	si:dkey-16l2.16	100	95.694	ENSONIG00000009443	si:dkey-16l2.16	100	95.694	Oreochromis_niloticus
ENSSDUG00000005719	si:dkey-16l2.16	100	89.952	ENSORLG00000001098	si:dkey-16l2.16	99	89.952	Oryzias_latipes
ENSSDUG00000005719	si:dkey-16l2.16	100	89.952	ENSORLG00020000867	si:dkey-16l2.16	99	89.952	Oryzias_latipes_hni
ENSSDUG00000005719	si:dkey-16l2.16	100	88.038	ENSOMEG00000015474	si:dkey-16l2.16	100	88.038	Oryzias_melastigma
ENSSDUG00000005719	si:dkey-16l2.16	100	93.301	ENSPKIG00000005686	-	100	93.301	Paramormyrops_kingsleyae
ENSSDUG00000005719	si:dkey-16l2.16	100	79.426	ENSPKIG00000018888	si:dkey-16l2.16	94	82.143	Paramormyrops_kingsleyae
ENSSDUG00000005719	si:dkey-16l2.16	100	94.737	ENSPMGG00000000751	si:dkey-16l2.16	100	94.737	Periophthalmus_magnuspinnatus
ENSSDUG00000005719	si:dkey-16l2.16	100	90.431	ENSPFOG00000004746	si:dkey-16l2.16	100	90.431	Poecilia_formosa
ENSSDUG00000005719	si:dkey-16l2.16	100	89.952	ENSPLAG00000021043	si:dkey-16l2.16	100	89.952	Poecilia_latipinna
ENSSDUG00000005719	si:dkey-16l2.16	100	90.431	ENSPMEG00000007165	si:dkey-16l2.16	100	90.431	Poecilia_mexicana
ENSSDUG00000005719	si:dkey-16l2.16	100	89.952	ENSPREG00000005323	si:dkey-16l2.16	100	89.952	Poecilia_reticulata
ENSSDUG00000005719	si:dkey-16l2.16	100	96.172	ENSPNYG00000009490	si:dkey-16l2.16	100	96.172	Pundamilia_nyererei
ENSSDUG00000005719	si:dkey-16l2.16	100	94.258	ENSPNAG00000018986	si:dkey-16l2.16	100	94.258	Pygocentrus_nattereri
ENSSDUG00000005719	si:dkey-16l2.16	99	80.288	ENSSFOG00015006414	-	85	83.616	Scleropages_formosus
ENSSDUG00000005719	si:dkey-16l2.16	100	92.344	ENSSFOG00015021448	-	100	92.344	Scleropages_formosus
ENSSDUG00000005719	si:dkey-16l2.16	100	92.344	ENSSMAG00000011769	si:dkey-16l2.16	94	92.344	Scophthalmus_maximus
ENSSDUG00000005719	si:dkey-16l2.16	100	100.000	ENSSLDG00000003631	si:dkey-16l2.16	100	100.000	Seriola_lalandi_dorsalis
ENSSDUG00000005719	si:dkey-16l2.16	100	97.608	ENSSPAG00000006302	si:dkey-16l2.16	100	97.608	Stegastes_partitus
ENSSDUG00000005719	si:dkey-16l2.16	100	96.172	ENSTRUG00000025076	si:dkey-16l2.16	100	96.172	Takifugu_rubripes
ENSSDUG00000005719	si:dkey-16l2.16	100	95.694	ENSTNIG00000011300	si:dkey-16l2.16	100	95.694	Tetraodon_nigroviridis
ENSSDUG00000005719	si:dkey-16l2.16	100	90.909	ENSXMAG00000021767	si:dkey-16l2.16	100	90.909	Xiphophorus_maculatus