EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000005912 (Gene tree)
Gene ID: 111216367
Gene Symbol: hnrnpub
Alias: hnrnpu|hnrpu|wu:fa66f11|wu:fc18b08|wu:fi89c08|zgc:111835|zgc:136480
Full Name: heterogeneous nuclear ribonucleoprotein U
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 11170 bases
Position: chrBDQW01000025.1:5169979-5181148
Accession: 111216367
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000008063	SAP	PF02037.27	2.9e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000008209	-	5276	XM_022737871	ENSSDUP00000008063	816 (aa)	XP_022593592	UPI000BBE18FB

Gene Model

Click here to download ENSSDUG00000005912's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000005912's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000005912	hnrnpub	87	40.228	ENSSDUG00000000399	HNRNPUL1	80	42.750

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000005912	hnrnpub	85	70.588	ENSG00000153187	HNRNPU	99	64.667	Homo_sapiens
ENSSDUG00000005912	hnrnpub	100	89.706	ENSAPOG00000017400	hnrnpub	100	88.480	Acanthochromis_polyacanthus
ENSSDUG00000005912	hnrnpub	85	70.588	ENSAMEG00000009145	HNRNPU	77	70.588	Ailuropoda_melanoleuca
ENSSDUG00000005912	hnrnpub	100	85.366	ENSACIG00000012138	hnrnpub	96	87.299	Amphilophus_citrinellus
ENSSDUG00000005912	hnrnpub	100	91.176	ENSAOCG00000015843	hnrnpub	100	89.338	Amphiprion_ocellaris
ENSSDUG00000005912	hnrnpub	100	91.176	ENSAPEG00000014679	hnrnpub	100	89.338	Amphiprion_percula
ENSSDUG00000005912	hnrnpub	98	93.383	ENSATEG00000016178	hnrnpub	97	92.385	Anabas_testudineus
ENSSDUG00000005912	hnrnpub	86	68.750	ENSACAG00000004511	HNRNPU	79	63.333	Anolis_carolinensis
ENSSDUG00000005912	hnrnpub	79	56.287	ENSANAG00000033895	-	79	60.000	Aotus_nancymaae
ENSSDUG00000005912	hnrnpub	100	87.745	ENSACLG00000008165	hnrnpub	100	87.010	Astatotilapia_calliptera
ENSSDUG00000005912	hnrnpub	85	70.588	ENSBTAG00000007606	HNRNPU	89	55.007	Bos_taurus
ENSSDUG00000005912	hnrnpub	85	70.588	ENSCJAG00000016914	HNRNPU	79	70.588	Callithrix_jacchus
ENSSDUG00000005912	hnrnpub	77	58.703	ENSCAFG00020000918	HNRNPU	69	61.268	Canis_lupus_dingo
ENSSDUG00000005912	hnrnpub	79	56.437	ENSCHIG00000004900	HNRNPU	75	55.102	Capra_hircus
ENSSDUG00000005912	hnrnpub	85	72.549	ENSCPOG00000011887	HNRNPU	80	72.549	Cavia_porcellus
ENSSDUG00000005912	hnrnpub	85	70.588	ENSCCAG00000037859	-	79	70.588	Cebus_capucinus
ENSSDUG00000005912	hnrnpub	85	70.588	ENSCATG00000035273	HNRNPU	79	70.588	Cercocebus_atys
ENSSDUG00000005912	hnrnpub	85	72.549	ENSCLAG00000007100	HNRNPU	80	72.549	Chinchilla_lanigera
ENSSDUG00000005912	hnrnpub	79	56.287	ENSCSAG00000009219	HNRNPU	75	55.117	Chlorocebus_sabaeus
ENSSDUG00000005912	hnrnpub	85	70.588	ENSCHOG00000001387	HNRNPU	77	70.588	Choloepus_hoffmanni
ENSSDUG00000005912	hnrnpub	67	62.587	ENSCPBG00000009415	HNRNPU	79	68.519	Chrysemys_picta_bellii
ENSSDUG00000005912	hnrnpub	85	70.588	ENSCANG00000022780	HNRNPU	78	70.588	Colobus_angolensis_palliatus
ENSSDUG00000005912	hnrnpub	81	55.507	ENSCGRG00001020525	Hnrnpu	77	83.721	Cricetulus_griseus_chok1gshd
ENSSDUG00000005912	hnrnpub	100	79.067	ENSCSEG00000010804	hnrnpub	100	83.134	Cynoglossus_semilaevis
ENSSDUG00000005912	hnrnpub	89	86.792	ENSCVAG00000004280	hnrnpub	100	74.598	Cyprinodon_variegatus
ENSSDUG00000005912	hnrnpub	100	59.790	ENSDARG00000004735	hnrnpub	100	57.442	Danio_rerio
ENSSDUG00000005912	hnrnpub	100	61.220	ENSDARG00000015206	hnrnpua	84	63.235	Danio_rerio
ENSSDUG00000005912	hnrnpub	99	51.074	ENSDNOG00000000215	HNRNPU	87	75.510	Dasypus_novemcinctus
ENSSDUG00000005912	hnrnpub	79	56.437	ENSDORG00000015491	Hnrnpu	74	55.940	Dipodomys_ordii
ENSSDUG00000005912	hnrnpub	85	70.588	ENSETEG00000014565	HNRNPU	79	70.588	Echinops_telfairi
ENSSDUG00000005912	hnrnpub	80	56.112	ENSEASG00005003017	HNRNPU	75	54.928	Equus_asinus_asinus
ENSSDUG00000005912	hnrnpub	80	55.965	ENSECAG00000007955	HNRNPU	75	54.783	Equus_caballus
ENSSDUG00000005912	hnrnpub	100	76.297	ENSELUG00000010733	hnrnpub	100	75.472	Esox_lucius
ENSSDUG00000005912	hnrnpub	77	58.517	ENSFCAG00000002156	HNRNPU	74	56.951	Felis_catus
ENSSDUG00000005912	hnrnpub	90	72.549	ENSFDAG00000006026	HNRNPU	99	72.549	Fukomys_damarensis
ENSSDUG00000005912	hnrnpub	100	81.611	ENSFHEG00000022639	hnrnpub	100	81.731	Fundulus_heteroclitus
ENSSDUG00000005912	hnrnpub	100	73.484	ENSGMOG00000001755	hnrnpub	99	72.455	Gadus_morhua
ENSSDUG00000005912	hnrnpub	70	81.395	ENSGALG00000010671	HNRNPU	77	78.261	Gallus_gallus
ENSSDUG00000005912	hnrnpub	100	82.796	ENSGAFG00000009369	hnrnpub	100	79.857	Gambusia_affinis
ENSSDUG00000005912	hnrnpub	100	77.408	ENSGACG00000004679	hnrnpub	99	75.709	Gasterosteus_aculeatus
ENSSDUG00000005912	hnrnpub	85	70.588	ENSGGOG00000004061	HNRNPU	79	70.588	Gorilla_gorilla
ENSSDUG00000005912	hnrnpub	100	88.113	ENSHBUG00000012290	hnrnpub	100	87.377	Haplochromis_burtoni
ENSSDUG00000005912	hnrnpub	85	74.510	ENSHGLG00000010594	-	77	74.510	Heterocephalus_glaber_female
ENSSDUG00000005912	hnrnpub	90	74.510	ENSHGLG00100015093	HNRNPU	99	74.510	Heterocephalus_glaber_male
ENSSDUG00000005912	hnrnpub	100	73.141	ENSHCOG00000020091	hnrnpub	83	79.942	Hippocampus_comes
ENSSDUG00000005912	hnrnpub	76	93.617	ENSIPUG00000007749	hnrnpu	94	83.051	Ictalurus_punctatus
ENSSDUG00000005912	hnrnpub	79	56.372	ENSJJAG00000011371	Hnrnpu	83	60.526	Jaculus_jaculus
ENSSDUG00000005912	hnrnpub	100	83.273	ENSKMAG00000004532	hnrnpub	100	84.000	Kryptolebias_marmoratus
ENSSDUG00000005912	hnrnpub	84	92.609	ENSLBEG00000022520	hnrnpub	100	89.104	Labrus_bergylta
ENSSDUG00000005912	hnrnpub	99	46.720	ENSLACG00000017463	HNRNPU	74	50.294	Latimeria_chalumnae
ENSSDUG00000005912	hnrnpub	86	93.617	ENSLOCG00000016652	hnrnpua	78	93.617	Lepisosteus_oculatus
ENSSDUG00000005912	hnrnpub	85	70.588	ENSLAFG00000021377	HNRNPU	79	70.588	Loxodonta_africana
ENSSDUG00000005912	hnrnpub	85	70.588	ENSMFAG00000037308	HNRNPU	79	70.588	Macaca_fascicularis
ENSSDUG00000005912	hnrnpub	79	56.287	ENSMMUG00000021098	HNRNPU	75	55.117	Macaca_mulatta
ENSSDUG00000005912	hnrnpub	85	70.588	ENSMNEG00000043645	HNRNPU	79	70.588	Macaca_nemestrina
ENSSDUG00000005912	hnrnpub	100	92.044	ENSMAMG00000007196	hnrnpub	100	92.166	Mastacembelus_armatus
ENSSDUG00000005912	hnrnpub	100	87.745	ENSMZEG00005003185	hnrnpub	100	87.010	Maylandia_zebra
ENSSDUG00000005912	hnrnpub	86	83.721	ENSMAUG00000008842	Hnrnpu	79	83.721	Mesocricetus_auratus
ENSSDUG00000005912	hnrnpub	85	70.588	ENSMICG00000004616	HNRNPU	79	70.588	Microcebus_murinus
ENSSDUG00000005912	hnrnpub	81	55.556	ENSMOCG00000015623	Hnrnpu	79	83.721	Microtus_ochrogaster
ENSSDUG00000005912	hnrnpub	85	75.510	ENSMODG00000006515	HNRNPU	78	75.510	Monodelphis_domestica
ENSSDUG00000005912	hnrnpub	96	90.458	ENSMALG00000018243	hnrnpub	96	89.050	Monopterus_albus
ENSSDUG00000005912	hnrnpub	79	56.372	MGP_CAROLIEiJ_G0014962	Hnrnpu	75	55.198	Mus_caroli
ENSSDUG00000005912	hnrnpub	79	56.372	ENSMUSG00000039630	Hnrnpu	70	61.239	Mus_musculus
ENSSDUG00000005912	hnrnpub	79	56.072	MGP_PahariEiJ_G0028193	Hnrnpu	75	54.905	Mus_pahari
ENSSDUG00000005912	hnrnpub	79	56.372	MGP_SPRETEiJ_G0015761	Hnrnpu	75	55.198	Mus_spretus
ENSSDUG00000005912	hnrnpub	85	68.627	ENSMLUG00000000475	HNRNPU	84	57.143	Myotis_lucifugus
ENSSDUG00000005912	hnrnpub	99	51.189	ENSNGAG00000019075	Hnrnpu	75	55.117	Nannospalax_galili
ENSSDUG00000005912	hnrnpub	100	87.745	ENSNBRG00000017855	hnrnpub	100	87.010	Neolamprologus_brichardi
ENSSDUG00000005912	hnrnpub	71	75.510	ENSMEUG00000000541	HNRNPU	73	75.510	Notamacropus_eugenii
ENSSDUG00000005912	hnrnpub	100	84.681	ENSONIG00000001260	hnrnpub	100	84.804	Oreochromis_niloticus
ENSSDUG00000005912	hnrnpub	84	70.588	ENSOCUG00000014469	HNRNPU	70	70.588	Oryctolagus_cuniculus
ENSSDUG00000005912	hnrnpub	100	84.804	ENSORLG00000016114	hnrnpub	100	85.294	Oryzias_latipes
ENSSDUG00000005912	hnrnpub	100	85.172	ENSORLG00020005363	hnrnpub	100	85.662	Oryzias_latipes_hni
ENSSDUG00000005912	hnrnpub	100	86.275	ENSORLG00015001190	hnrnpub	100	85.662	Oryzias_latipes_hsok
ENSSDUG00000005912	hnrnpub	100	81.273	ENSOMEG00000014951	hnrnpub	100	84.191	Oryzias_melastigma
ENSSDUG00000005912	hnrnpub	99	51.178	ENSOGAG00000014024	HNRNPU	75	55.263	Otolemur_garnettii
ENSSDUG00000005912	hnrnpub	85	70.588	ENSOARG00000004985	HNRNPU	86	70.588	Ovis_aries
ENSSDUG00000005912	hnrnpub	85	70.588	ENSPPAG00000038652	HNRNPU	79	70.588	Pan_paniscus
ENSSDUG00000005912	hnrnpub	85	70.588	ENSPPRG00000002662	HNRNPU	79	70.588	Panthera_pardus
ENSSDUG00000005912	hnrnpub	85	70.588	ENSPTRG00000002182	HNRNPU	79	70.588	Pan_troglodytes
ENSSDUG00000005912	hnrnpub	79	56.287	ENSPANG00000011643	HNRNPU	79	60.000	Papio_anubis
ENSSDUG00000005912	hnrnpub	100	68.924	ENSPKIG00000022332	hnrnpub	100	66.707	Paramormyrops_kingsleyae
ENSSDUG00000005912	hnrnpub	100	68.440	ENSPKIG00000006885	hnrnpua	81	69.795	Paramormyrops_kingsleyae
ENSSDUG00000005912	hnrnpub	85	75.510	ENSPCIG00000008657	HNRNPU	78	75.510	Phascolarctos_cinereus
ENSSDUG00000005912	hnrnpub	100	83.758	ENSPFOG00000002908	hnrnpub	100	82.667	Poecilia_formosa
ENSSDUG00000005912	hnrnpub	100	83.273	ENSPLAG00000004160	hnrnpub	100	81.774	Poecilia_latipinna
ENSSDUG00000005912	hnrnpub	77	56.556	ENSPCOG00000003883	-	77	53.869	Propithecus_coquereli
ENSSDUG00000005912	hnrnpub	85	70.588	ENSPCOG00000018655	-	79	70.588	Propithecus_coquereli
ENSSDUG00000005912	hnrnpub	85	70.588	ENSPVAG00000002581	HNRNPU	79	70.588	Pteropus_vampyrus
ENSSDUG00000005912	hnrnpub	100	88.113	ENSPNYG00000021642	hnrnpub	100	87.377	Pundamilia_nyererei
ENSSDUG00000005912	hnrnpub	100	67.223	ENSPNAG00000001055	hnrnpub	83	62.534	Pygocentrus_nattereri
ENSSDUG00000005912	hnrnpub	79	56.372	ENSRNOG00000033790	Hnrnpu	75	55.344	Rattus_norvegicus
ENSSDUG00000005912	hnrnpub	79	55.539	ENSRBIG00000031519	HNRNPU	78	59.138	Rhinopithecus_bieti
ENSSDUG00000005912	hnrnpub	81	55.362	ENSRROG00000041642	HNRNPU	76	60.847	Rhinopithecus_roxellana
ENSSDUG00000005912	hnrnpub	100	68.133	ENSSFOG00015001124	hnrnpub	82	72.595	Scleropages_formosus
ENSSDUG00000005912	hnrnpub	100	67.384	ENSSFOG00015019004	hnrnpu	80	71.429	Scleropages_formosus
ENSSDUG00000005912	hnrnpub	100	88.180	ENSSMAG00000003607	hnrnpub	100	85.934	Scophthalmus_maximus
ENSSDUG00000005912	hnrnpub	100	98.782	ENSSLDG00000004899	hnrnpub	100	98.782	Seriola_lalandi_dorsalis
ENSSDUG00000005912	hnrnpub	81	55.783	ENSSPUG00000011393	HNRNPU	99	51.305	Sphenodon_punctatus
ENSSDUG00000005912	hnrnpub	100	91.544	ENSSPAG00000011853	hnrnpub	100	89.583	Stegastes_partitus
ENSSDUG00000005912	hnrnpub	85	70.588	ENSSSCG00000010877	HNRNPU	79	70.588	Sus_scrofa
ENSSDUG00000005912	hnrnpub	100	81.630	ENSTRUG00000007759	hnrnpub	100	82.282	Takifugu_rubripes
ENSSDUG00000005912	hnrnpub	85	70.588	ENSUAMG00000021120	HNRNPU	79	70.588	Ursus_americanus
ENSSDUG00000005912	hnrnpub	85	63.462	ENSUMAG00000012322	HNRNPU	89	54.366	Ursus_maritimus
ENSSDUG00000005912	hnrnpub	79	70.588	ENSVPAG00000010520	HNRNPU	86	58.442	Vicugna_pacos
ENSSDUG00000005912	hnrnpub	77	58.703	ENSVVUG00000026524	HNRNPU	69	61.268	Vulpes_vulpes
ENSSDUG00000005912	hnrnpub	99	50.058	ENSXETG00000011386	hnrnpu	77	53.275	Xenopus_tropicalis
ENSSDUG00000005912	hnrnpub	100	83.758	ENSXMAG00000010356	hnrnpub	100	82.909	Xiphophorus_maculatus