EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000006103 (Gene tree)
Gene ID: 111225282
Gene Symbol: srsf5a
Alias: fb49e01|im:6906390|sfrs5|sfrs5a|wu:fb49e01|wu:fj09b12
Full Name: serine/arginine-rich splicing factor 5-like
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 8494 bases
Position: chrBDQW01000149.1:3601077-3609570
Accession: 111225282
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000008331	RRM_1	PF00076.22	2.5e-33	1	2
ENSSDUP00000008331	RRM_1	PF00076.22	2.5e-33	2	2
ENSSDUP00000008331	RRM_3	PF08777.11	1.8e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000008482	-	2177	XM_022750052	ENSSDUP00000008331	288 (aa)	XP_022605773	UPI000BBECDEC

Gene Model

Click here to download ENSSDUG00000006103's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03040	Spliceosome	KEGG
sdu05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000006103's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000006103	srsf5a	73	39.535	ENSSDUG00000018908	srsf9	74	38.342
ENSSDUG00000006103	srsf5a	64	69.519	ENSSDUG00000005766	srsf5b	65	70.652
ENSSDUG00000006103	srsf5a	59	42.703	ENSSDUG00000003887	-	68	41.209
ENSSDUG00000006103	srsf5a	59	42.286	ENSSDUG00000011303	-	71	41.714
ENSSDUG00000006103	srsf5a	62	64.641	ENSSDUG00000016097	srsf6a	52	63.536
ENSSDUG00000006103	srsf5a	59	40.000	ENSSDUG00000003929	-	70	38.286
ENSSDUG00000006103	srsf5a	62	62.921	ENSSDUG00000007387	srsf4	70	54.202

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000006103	srsf5a	100	95.608	ENSAPOG00000017395	srsf5a	100	95.608	Acanthochromis_polyacanthus
ENSSDUG00000006103	srsf5a	91	78.927	ENSACIG00000011892	srsf5a	98	86.029	Amphilophus_citrinellus
ENSSDUG00000006103	srsf5a	81	87.764	ENSAOCG00000014967	srsf5a	100	92.833	Amphiprion_ocellaris
ENSSDUG00000006103	srsf5a	81	87.764	ENSAPEG00000009297	srsf5a	100	92.833	Amphiprion_percula
ENSSDUG00000006103	srsf5a	100	91.468	ENSATEG00000000198	srsf5a	100	89.420	Anabas_testudineus
ENSSDUG00000006103	srsf5a	63	78.804	ENSAPLG00000002469	-	70	75.543	Anas_platyrhynchos
ENSSDUG00000006103	srsf5a	63	79.781	ENSACAG00000029015	-	68	75.824	Anolis_carolinensis
ENSSDUG00000006103	srsf5a	80	90.795	ENSACLG00000027166	srsf5a	91	86.716	Astatotilapia_calliptera
ENSSDUG00000006103	srsf5a	92	65.799	ENSAMXG00000030476	srsf5a	67	88.108	Astyanax_mexicanus
ENSSDUG00000006103	srsf5a	63	81.421	ENSCPBG00000021518	-	70	77.473	Chrysemys_picta_bellii
ENSSDUG00000006103	srsf5a	63	54.082	ENSCSAVG00000011376	-	78	56.122	Ciona_savignyi
ENSSDUG00000006103	srsf5a	81	89.300	ENSCSEG00000008109	srsf5a	78	88.889	Cynoglossus_semilaevis
ENSSDUG00000006103	srsf5a	79	78.189	ENSCVAG00000016982	srsf5a	97	74.627	Cyprinodon_variegatus
ENSSDUG00000006103	srsf5a	63	88.587	ENSDARG00000029818	srsf5a	100	82.707	Danio_rerio
ENSSDUG00000006103	srsf5a	63	80.311	ENSELUG00000020439	srsf5a	62	80.311	Esox_lucius
ENSSDUG00000006103	srsf5a	63	79.670	ENSFALG00000005098	-	64	75.824	Ficedula_albicollis
ENSSDUG00000006103	srsf5a	81	76.357	ENSFHEG00000003955	srsf5a	97	68.276	Fundulus_heteroclitus
ENSSDUG00000006103	srsf5a	63	90.110	ENSGMOG00000000869	srsf5a	94	86.813	Gadus_morhua
ENSSDUG00000006103	srsf5a	63	79.121	ENSGALG00000033259	SRSF5A	63	75.824	Gallus_gallus
ENSSDUG00000006103	srsf5a	82	74.793	ENSGAFG00000018237	srsf5a	74	64.854	Gambusia_affinis
ENSSDUG00000006103	srsf5a	63	81.421	ENSGAGG00000007312	-	70	77.473	Gopherus_agassizii
ENSSDUG00000006103	srsf5a	80	90.756	ENSHBUG00000014048	srsf5a	91	87.778	Haplochromis_burtoni
ENSSDUG00000006103	srsf5a	63	89.247	ENSHCOG00000017557	srsf5a	62	89.785	Hippocampus_comes
ENSSDUG00000006103	srsf5a	100	64.423	ENSIPUG00000003439	srsf5a	69	84.211	Ictalurus_punctatus
ENSSDUG00000006103	srsf5a	80	70.763	ENSKMAG00000014937	srsf5a	72	79.832	Kryptolebias_marmoratus
ENSSDUG00000006103	srsf5a	63	83.077	ENSLBEG00000017153	srsf5a	91	79.253	Labrus_bergylta
ENSSDUG00000006103	srsf5a	63	84.615	ENSLACG00000017874	-	98	66.667	Latimeria_chalumnae
ENSSDUG00000006103	srsf5a	63	87.027	ENSLOCG00000014075	srsf5a	61	85.946	Lepisosteus_oculatus
ENSSDUG00000006103	srsf5a	100	92.361	ENSMAMG00000000192	srsf5a	93	87.786	Mastacembelus_armatus
ENSSDUG00000006103	srsf5a	80	91.176	ENSMZEG00005010485	srsf5a	91	88.148	Maylandia_zebra
ENSSDUG00000006103	srsf5a	68	77.041	ENSMGAG00000011888	-	96	73.780	Meleagris_gallopavo
ENSSDUG00000006103	srsf5a	100	88.176	ENSMMOG00000009793	srsf5a	90	86.567	Mola_mola
ENSSDUG00000006103	srsf5a	100	84.375	ENSMALG00000021194	srsf5a	100	82.292	Monopterus_albus
ENSSDUG00000006103	srsf5a	80	91.561	ENSNBRG00000000771	srsf5a	91	88.476	Neolamprologus_brichardi
ENSSDUG00000006103	srsf5a	80	91.561	ENSONIG00000019583	srsf5a	91	88.476	Oreochromis_niloticus
ENSSDUG00000006103	srsf5a	80	77.826	ENSORLG00000009268	srsf5a	92	80.916	Oryzias_latipes
ENSSDUG00000006103	srsf5a	80	77.826	ENSORLG00020003281	srsf5	92	80.916	Oryzias_latipes_hni
ENSSDUG00000006103	srsf5a	80	77.826	ENSORLG00015023075	srsf5	92	80.916	Oryzias_latipes_hsok
ENSSDUG00000006103	srsf5a	80	76.419	ENSOMEG00000000628	srsf5a	92	82.443	Oryzias_melastigma
ENSSDUG00000006103	srsf5a	91	75.451	ENSPKIG00000002054	srsf5a	68	86.559	Paramormyrops_kingsleyae
ENSSDUG00000006103	srsf5a	63	80.874	ENSPSIG00000008238	-	69	78.142	Pelodiscus_sinensis
ENSSDUG00000006103	srsf5a	93	71.777	ENSPMGG00000020125	srsf5a	55	83.060	Periophthalmus_magnuspinnatus
ENSSDUG00000006103	srsf5a	82	77.647	ENSPFOG00000022993	srsf5a	79	67.063	Poecilia_formosa
ENSSDUG00000006103	srsf5a	81	77.559	ENSPLAG00000005508	srsf5a	78	66.932	Poecilia_latipinna
ENSSDUG00000006103	srsf5a	82	78.039	ENSPMEG00000016339	srsf5a	79	67.063	Poecilia_mexicana
ENSSDUG00000006103	srsf5a	90	75.427	ENSPREG00000018091	srsf5a	80	66.403	Poecilia_reticulata
ENSSDUG00000006103	srsf5a	80	91.176	ENSPNYG00000021245	srsf5a	91	88.148	Pundamilia_nyererei
ENSSDUG00000006103	srsf5a	93	64.945	ENSPNAG00000021333	srsf5a	66	86.957	Pygocentrus_nattereri
ENSSDUG00000006103	srsf5a	80	79.839	ENSSFOG00015008377	srsf5	88	70.800	Scleropages_formosus
ENSSDUG00000006103	srsf5a	100	80.707	ENSSMAG00000010899	srsf5a	100	83.280	Scophthalmus_maximus
ENSSDUG00000006103	srsf5a	100	98.966	ENSSLDG00000004146	srsf5a	100	98.966	Seriola_lalandi_dorsalis
ENSSDUG00000006103	srsf5a	63	77.049	ENSSPUG00000002052	-	68	74.176	Sphenodon_punctatus
ENSSDUG00000006103	srsf5a	80	94.397	ENSSPAG00000002821	srsf5a	92	94.340	Stegastes_partitus
ENSSDUG00000006103	srsf5a	63	79.670	ENSTGUG00000011492	-	68	75.824	Taeniopygia_guttata
ENSSDUG00000006103	srsf5a	100	88.591	ENSTRUG00000022908	srsf5a	82	88.430	Takifugu_rubripes
ENSSDUG00000006103	srsf5a	99	61.512	ENSXETG00000017937	srsf5a	72	76.596	Xenopus_tropicalis
ENSSDUG00000006103	srsf5a	90	77.224	ENSXCOG00000015338	srsf5a	79	80.083	Xiphophorus_couchianus
ENSSDUG00000006103	srsf5a	90	75.342	ENSXMAG00000012823	srsf5a	80	67.460	Xiphophorus_maculatus