EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000006128 (Gene tree)
Gene ID: 111227087
Gene Symbol: ncl
Alias: fa12d03|wu:fa12d03|zgc:152810
Full Name: nucleolin
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 9988 bases
Position: chrBDQW01000002.1:4800227-4810214
Accession: 111227087
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000008453	RRM_1	PF00076.22	1.2e-61	1	4
ENSSDUP00000008453	RRM_1	PF00076.22	1.2e-61	2	4
ENSSDUP00000008453	RRM_1	PF00076.22	1.2e-61	3	4
ENSSDUP00000008453	RRM_1	PF00076.22	1.2e-61	4	4
ENSSDUP00000008369	RRM_1	PF00076.22	9e-61	1	4
ENSSDUP00000008369	RRM_1	PF00076.22	9e-61	2	4
ENSSDUP00000008369	RRM_1	PF00076.22	9e-61	3	4
ENSSDUP00000008369	RRM_1	PF00076.22	9e-61	4	4
ENSSDUP00000008403	RRM_1	PF00076.22	9.2e-61	1	4
ENSSDUP00000008403	RRM_1	PF00076.22	9.2e-61	2	4
ENSSDUP00000008403	RRM_1	PF00076.22	9.2e-61	3	4
ENSSDUP00000008403	RRM_1	PF00076.22	9.2e-61	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000008519	-	3360	-	ENSSDUP00000008369	628 (aa)	-	-
ENSSDUT00000008553	-	3177	XM_022752518	ENSSDUP00000008403	630 (aa)	XP_022608239	-
ENSSDUT00000008604	-	1302	-	ENSSDUP00000008453	433 (aa)	-	-

Gene Model

Click here to download ENSSDUG00000006128's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000006128's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000006128	ncl	92	42.823	ENSSDUG00000010922	-	70	44.416
ENSSDUG00000006128	ncl	79	30.303	ENSSDUG00000012683	pabpc4	64	30.303
ENSSDUG00000006128	ncl	79	31.515	ENSSDUG00000014743	pabpc1l	58	31.515
ENSSDUG00000006128	ncl	79	31.496	ENSSDUG00000011965	pabpc1b	58	30.909
ENSSDUG00000006128	ncl	79	30.909	ENSSDUG00000006675	pabpc1a	58	30.909
ENSSDUG00000006128	ncl	52	31.081	ENSSDUG00000008140	ELAVL2	78	31.081

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000006128	ncl	91	42.005	ENSAPOG00000014534	-	67	41.582	Acanthochromis_polyacanthus
ENSSDUG00000006128	ncl	86	92.267	ENSAPOG00000023888	ncl	75	83.673	Acanthochromis_polyacanthus
ENSSDUG00000006128	ncl	86	81.867	ENSACIG00000013234	ncl	63	81.867	Amphilophus_citrinellus
ENSSDUG00000006128	ncl	91	39.952	ENSAOCG00000014792	-	61	40.722	Amphiprion_ocellaris
ENSSDUG00000006128	ncl	86	93.067	ENSAOCG00000003133	ncl	81	93.750	Amphiprion_ocellaris
ENSSDUG00000006128	ncl	91	40.191	ENSAPEG00000013612	-	60	40.979	Amphiprion_percula
ENSSDUG00000006128	ncl	88	93.067	ENSAPEG00000002769	ncl	77	83.734	Amphiprion_percula
ENSSDUG00000006128	ncl	96	43.864	ENSATEG00000019862	-	81	44.444	Anabas_testudineus
ENSSDUG00000006128	ncl	86	93.067	ENSATEG00000013343	ncl	66	91.540	Anabas_testudineus
ENSSDUG00000006128	ncl	95	55.450	ENSAPLG00000012897	-	89	60.267	Anas_platyrhynchos
ENSSDUG00000006128	ncl	85	63.802	ENSACAG00000001006	-	52	63.708	Anolis_carolinensis
ENSSDUG00000006128	ncl	85	79.677	ENSACLG00000026031	ncl	85	79.677	Astatotilapia_calliptera
ENSSDUG00000006128	ncl	84	72.848	ENSAMXG00000001647	ncl	84	73.667	Astyanax_mexicanus
ENSSDUG00000006128	ncl	73	49.550	ENSCHIG00000003401	-	52	49.333	Capra_hircus
ENSSDUG00000006128	ncl	79	44.160	ENSCHIG00000012665	-	54	44.330	Capra_hircus
ENSSDUG00000006128	ncl	85	63.492	ENSCPBG00000016444	-	56	63.130	Chrysemys_picta_bellii
ENSSDUG00000006128	ncl	86	86.544	ENSCSEG00000015089	ncl	83	83.333	Cynoglossus_semilaevis
ENSSDUG00000006128	ncl	85	83.065	ENSCVAG00000012600	ncl	61	81.754	Cyprinodon_variegatus
ENSSDUG00000006128	ncl	84	77.850	ENSDARG00000002710	ncl	83	78.176	Danio_rerio
ENSSDUG00000006128	ncl	82	49.036	ENSDNOG00000040257	-	71	46.868	Dasypus_novemcinctus
ENSSDUG00000006128	ncl	90	44.724	ENSDNOG00000031611	-	67	46.381	Dasypus_novemcinctus
ENSSDUG00000006128	ncl	54	54.362	ENSDNOG00000040440	-	96	54.167	Dasypus_novemcinctus
ENSSDUG00000006128	ncl	89	48.768	ENSEBUG00000016173	ncl	50	48.586	Eptatretus_burgeri
ENSSDUG00000006128	ncl	87	50.000	ENSELUG00000022826	-	80	50.402	Esox_lucius
ENSSDUG00000006128	ncl	86	75.726	ENSELUG00000006033	ncl	63	76.526	Esox_lucius
ENSSDUG00000006128	ncl	85	60.158	ENSFALG00000007592	-	55	59.845	Ficedula_albicollis
ENSSDUG00000006128	ncl	86	79.467	ENSFHEG00000018000	ncl	84	79.858	Fundulus_heteroclitus
ENSSDUG00000006128	ncl	86	69.657	ENSGMOG00000001341	ncl	67	68.545	Gadus_morhua
ENSSDUG00000006128	ncl	85	60.847	ENSGALG00000032930	NCL	56	60.519	Gallus_gallus
ENSSDUG00000006128	ncl	87	83.465	ENSGAFG00000015375	ncl	67	70.803	Gambusia_affinis
ENSSDUG00000006128	ncl	97	71.649	ENSGACG00000008970	ncl	73	82.632	Gasterosteus_aculeatus
ENSSDUG00000006128	ncl	85	63.660	ENSGAGG00000013330	-	56	63.298	Gopherus_agassizii
ENSSDUG00000006128	ncl	85	81.452	ENSHBUG00000006869	ncl	77	75.926	Haplochromis_burtoni
ENSSDUG00000006128	ncl	86	86.096	ENSHCOG00000010234	ncl	65	77.612	Hippocampus_comes
ENSSDUG00000006128	ncl	84	75.329	ENSIPUG00000024556	ncl	97	67.624	Ictalurus_punctatus
ENSSDUG00000006128	ncl	85	85.294	ENSKMAG00000008111	ncl	84	69.682	Kryptolebias_marmoratus
ENSSDUG00000006128	ncl	86	90.933	ENSLBEG00000019073	ncl	94	81.944	Labrus_bergylta
ENSSDUG00000006128	ncl	91	43.171	ENSLBEG00000007915	-	66	43.478	Labrus_bergylta
ENSSDUG00000006128	ncl	84	42.559	ENSLBEG00000014278	-	82	42.857	Labrus_bergylta
ENSSDUG00000006128	ncl	85	65.517	ENSLACG00000009328	ncl	73	61.751	Latimeria_chalumnae
ENSSDUG00000006128	ncl	84	53.887	ENSLACG00000022167	-	79	54.011	Latimeria_chalumnae
ENSSDUG00000006128	ncl	94	67.606	ENSLOCG00000004828	ncl	73	67.024	Lepisosteus_oculatus
ENSSDUG00000006128	ncl	90	41.849	ENSMAMG00000003479	-	69	41.558	Mastacembelus_armatus
ENSSDUG00000006128	ncl	85	91.421	ENSMAMG00000002086	ncl	59	83.162	Mastacembelus_armatus
ENSSDUG00000006128	ncl	85	81.452	ENSMZEG00005017438	ncl	77	75.325	Maylandia_zebra
ENSSDUG00000006128	ncl	84	60.054	ENSMGAG00000008147	-	89	60.000	Meleagris_gallopavo
ENSSDUG00000006128	ncl	86	90.794	ENSMMOG00000008553	ncl	85	90.794	Mola_mola
ENSSDUG00000006128	ncl	84	57.702	ENSMODG00000002470	-	55	57.398	Monodelphis_domestica
ENSSDUG00000006128	ncl	92	87.749	ENSMALG00000014827	ncl	68	84.966	Monopterus_albus
ENSSDUG00000006128	ncl	80	45.631	ENSMPUG00000001663	-	57	45.631	Mustela_putorius_furo
ENSSDUG00000006128	ncl	85	81.597	ENSNBRG00000000146	-	86	81.597	Neolamprologus_brichardi
ENSSDUG00000006128	ncl	83	81.597	ENSNBRG00000001232	ncl	100	75.070	Neolamprologus_brichardi
ENSSDUG00000006128	ncl	84	59.309	ENSMEUG00000012335	-	55	58.961	Notamacropus_eugenii
ENSSDUG00000006128	ncl	85	81.452	ENSONIG00000012508	ncl	76	76.067	Oreochromis_niloticus
ENSSDUG00000006128	ncl	60	39.370	ENSONIG00000010631	-	97	39.623	Oreochromis_niloticus
ENSSDUG00000006128	ncl	89	60.622	ENSOANG00000008732	-	78	58.980	Ornithorhynchus_anatinus
ENSSDUG00000006128	ncl	83	87.088	ENSORLG00000007055	ncl	85	81.562	Oryzias_latipes
ENSSDUG00000006128	ncl	89	38.000	ENSORLG00000004645	-	84	39.426	Oryzias_latipes
ENSSDUG00000006128	ncl	91	83.095	ENSORLG00020017943	ncl	85	81.562	Oryzias_latipes_hni
ENSSDUG00000006128	ncl	89	38.000	ENSORLG00020003497	-	74	38.903	Oryzias_latipes_hni
ENSSDUG00000006128	ncl	91	83.427	ENSORLG00015013815	ncl	98	82.865	Oryzias_latipes_hsok
ENSSDUG00000006128	ncl	89	38.404	ENSORLG00015006613	-	77	39.426	Oryzias_latipes_hsok
ENSSDUG00000006128	ncl	86	86.933	ENSOMEG00000020786	ncl	67	82.505	Oryzias_melastigma
ENSSDUG00000006128	ncl	89	38.765	ENSOMEG00000015864	-	82	39.119	Oryzias_melastigma
ENSSDUG00000006128	ncl	87	80.423	ENSPKIG00000002604	ncl	68	75.325	Paramormyrops_kingsleyae
ENSSDUG00000006128	ncl	89	62.078	ENSPSIG00000002361	-	55	61.979	Pelodiscus_sinensis
ENSSDUG00000006128	ncl	98	77.829	ENSPMGG00000004709	ncl	84	81.639	Periophthalmus_magnuspinnatus
ENSSDUG00000006128	ncl	84	57.702	ENSPCIG00000003293	-	53	57.963	Phascolarctos_cinereus
ENSSDUG00000006128	ncl	87	83.202	ENSPFOG00000024205	ncl	52	83.246	Poecilia_formosa
ENSSDUG00000006128	ncl	87	82.677	ENSPLAG00000024026	ncl	52	82.723	Poecilia_latipinna
ENSSDUG00000006128	ncl	87	83.202	ENSPMEG00000006000	ncl	52	83.508	Poecilia_mexicana
ENSSDUG00000006128	ncl	85	81.452	ENSPNYG00000020494	ncl	53	81.452	Pundamilia_nyererei
ENSSDUG00000006128	ncl	86	73.545	ENSPNAG00000006192	ncl	73	67.161	Pygocentrus_nattereri
ENSSDUG00000006128	ncl	84	53.298	ENSSHAG00000002702	-	60	53.608	Sarcophilus_harrisii
ENSSDUG00000006128	ncl	88	50.965	ENSSHAG00000007489	-	50	51.504	Sarcophilus_harrisii
ENSSDUG00000006128	ncl	98	76.636	ENSSFOG00015008583	ncl	72	78.465	Scleropages_formosus
ENSSDUG00000006128	ncl	81	43.944	ENSSFOG00015013153	-	78	47.039	Scleropages_formosus
ENSSDUG00000006128	ncl	88	44.192	ENSSMAG00000007582	-	61	44.882	Scophthalmus_maximus
ENSSDUG00000006128	ncl	85	90.186	ENSSMAG00000021241	ncl	100	78.793	Scophthalmus_maximus
ENSSDUG00000006128	ncl	98	93.187	ENSSLDG00000002012	ncl	86	100.000	Seriola_lalandi_dorsalis
ENSSDUG00000006128	ncl	91	43.596	ENSSLDG00000015784	-	66	44.386	Seriola_lalandi_dorsalis
ENSSDUG00000006128	ncl	85	60.560	ENSSPUG00000008244	-	60	60.925	Sphenodon_punctatus
ENSSDUG00000006128	ncl	93	42.548	ENSSPAG00000001859	-	61	42.969	Stegastes_partitus
ENSSDUG00000006128	ncl	83	92.553	ENSSPAG00000002637	ncl	100	81.285	Stegastes_partitus
ENSSDUG00000006128	ncl	85	58.163	ENSTGUG00000009782	-	60	59.474	Taeniopygia_guttata
ENSSDUG00000006128	ncl	82	84.167	ENSTRUG00000008185	ncl	75	73.674	Takifugu_rubripes
ENSSDUG00000006128	ncl	86	82.447	ENSTNIG00000012186	ncl	77	77.962	Tetraodon_nigroviridis
ENSSDUG00000006128	ncl	85	62.599	ENSXETG00000009517	ncl	61	56.674	Xenopus_tropicalis
ENSSDUG00000006128	ncl	85	41.361	ENSXCOG00000007369	-	89	41.579	Xiphophorus_couchianus
ENSSDUG00000006128	ncl	99	55.191	ENSXCOG00000003524	ncl	99	66.947	Xiphophorus_couchianus
ENSSDUG00000006128	ncl	87	84.252	ENSXMAG00000005914	ncl	52	84.293	Xiphophorus_maculatus