EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000006139 (Gene tree)
Gene ID: 111220827
Gene Symbol: chd9
Alias: fb08b06|fb34c12|wu:fb08b06|wu:fb34c12
Full Name: chromodomain helicase DNA binding protein 9
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 66624 bases
Position: chrBDQW01000003.1:9144910-9211533
Accession: 111220827
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000008747	ResIII	PF04851.15	1.8e-05	1	1
ENSSDUP00000008637	ResIII	PF04851.15	1.9e-05	1	1
ENSSDUP00000008747	BRK	PF07533.16	5.2e-32	1	2
ENSSDUP00000008747	BRK	PF07533.16	5.2e-32	2	2
ENSSDUP00000008637	BRK	PF07533.16	5.3e-32	1	2
ENSSDUP00000008637	BRK	PF07533.16	5.3e-32	2	2
ENSSDUP00000008556	BRK	PF07533.16	8.5e-32	1	2
ENSSDUP00000008556	BRK	PF07533.16	8.5e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000008916	-	7341	-	ENSSDUP00000008747	2446 (aa)	-	-
ENSSDUT00000008800	-	10732	XM_022744083	ENSSDUP00000008637	2484 (aa)	XP_022599804	-
ENSSDUT00000008713	-	12257	XM_022744068	ENSSDUP00000008556	3016 (aa)	XP_022599789	UPI000BBE381B

Gene Model

Click here to download ENSSDUG00000006139's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000006139's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000006139	chd9	69	60.340	ENSSDUG00000012439	chd8	69	60.566
ENSSDUG00000006139	chd9	68	69.408	ENSSDUG00000013773	chd7	55	68.949

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000006139	chd9	99	68.070	ENSG00000177200	CHD9	97	69.075	Homo_sapiens
ENSSDUG00000006139	chd9	99	93.890	ENSAPOG00000023034	chd9	99	93.027	Acanthochromis_polyacanthus
ENSSDUG00000006139	chd9	98	68.364	ENSAMEG00000016232	CHD9	84	70.714	Ailuropoda_melanoleuca
ENSSDUG00000006139	chd9	97	87.081	ENSACIG00000004097	chd9	98	81.644	Amphilophus_citrinellus
ENSSDUG00000006139	chd9	99	93.873	ENSAOCG00000005487	chd9	99	93.229	Amphiprion_ocellaris
ENSSDUG00000006139	chd9	99	93.914	ENSAPEG00000009859	chd9	99	93.269	Amphiprion_percula
ENSSDUG00000006139	chd9	99	92.883	ENSATEG00000002748	chd9	99	87.724	Anabas_testudineus
ENSSDUG00000006139	chd9	98	70.073	ENSAPLG00000002826	CHD9	79	72.556	Anas_platyrhynchos
ENSSDUG00000006139	chd9	68	75.117	ENSACAG00000016150	CHD9	96	64.152	Anolis_carolinensis
ENSSDUG00000006139	chd9	98	68.357	ENSANAG00000015630	CHD9	91	70.070	Aotus_nancymaae
ENSSDUG00000006139	chd9	98	89.784	ENSACLG00000016899	chd9	99	86.919	Astatotilapia_calliptera
ENSSDUG00000006139	chd9	99	77.551	ENSAMXG00000005652	chd9	99	77.298	Astyanax_mexicanus
ENSSDUG00000006139	chd9	95	69.842	ENSBTAG00000002287	CHD9	84	70.553	Bos_taurus
ENSSDUG00000006139	chd9	98	68.639	ENSCJAG00000001573	CHD9	91	70.423	Callithrix_jacchus
ENSSDUG00000006139	chd9	67	74.985	ENSCAFG00000009699	CHD9	84	70.893	Canis_familiaris
ENSSDUG00000006139	chd9	67	74.985	ENSCAFG00020002879	CHD9	91	71.127	Canis_lupus_dingo
ENSSDUG00000006139	chd9	95	68.505	ENSCHIG00000021000	CHD9	61	74.426	Capra_hircus
ENSSDUG00000006139	chd9	95	69.329	ENSTSYG00000007693	CHD9	91	71.127	Carlito_syrichta
ENSSDUG00000006139	chd9	89	59.189	ENSCAPG00000011604	CHD9	74	61.017	Cavia_aperea
ENSSDUG00000006139	chd9	67	70.280	ENSCPOG00000036544	CHD9	79	67.050	Cavia_porcellus
ENSSDUG00000006139	chd9	99	60.124	ENSCCAG00000036178	CHD9	91	71.025	Cebus_capucinus
ENSSDUG00000006139	chd9	67	74.672	ENSCATG00000036753	CHD9	91	69.792	Cercocebus_atys
ENSSDUG00000006139	chd9	98	68.262	ENSCLAG00000007137	CHD9	99	78.135	Chinchilla_lanigera
ENSSDUG00000006139	chd9	65	75.805	ENSCSAG00000005311	CHD9	84	70.324	Chlorocebus_sabaeus
ENSSDUG00000006139	chd9	68	90.625	ENSCHOG00000003935	CHD9	52	90.576	Choloepus_hoffmanni
ENSSDUG00000006139	chd9	87	82.282	ENSCPBG00000012459	CHD9	84	79.190	Chrysemys_picta_bellii
ENSSDUG00000006139	chd9	99	59.779	ENSCANG00000030349	CHD9	91	70.423	Colobus_angolensis_palliatus
ENSSDUG00000006139	chd9	98	67.646	ENSCGRG00001016150	Chd9	84	70.021	Cricetulus_griseus_chok1gshd
ENSSDUG00000006139	chd9	98	67.646	ENSCGRG00000012850	Chd9	99	77.679	Cricetulus_griseus_crigri
ENSSDUG00000006139	chd9	99	87.430	ENSCSEG00000009209	chd9	99	86.761	Cynoglossus_semilaevis
ENSSDUG00000006139	chd9	97	88.388	ENSCVAG00000016195	chd9	99	81.171	Cyprinodon_variegatus
ENSSDUG00000006139	chd9	99	76.435	ENSDARG00000074498	chd9	99	76.263	Danio_rerio
ENSSDUG00000006139	chd9	93	70.611	ENSDNOG00000006045	CHD9	96	70.550	Dasypus_novemcinctus
ENSSDUG00000006139	chd9	82	68.538	ENSDORG00000008523	-	96	70.085	Dipodomys_ordii
ENSSDUG00000006139	chd9	57	91.270	ENSETEG00000009565	CHD9	76	91.129	Echinops_telfairi
ENSSDUG00000006139	chd9	93	74.447	ENSEASG00005014832	CHD9	95	79.215	Equus_asinus_asinus
ENSSDUG00000006139	chd9	65	76.245	ENSECAG00000011505	CHD9	79	70.576	Equus_caballus
ENSSDUG00000006139	chd9	74	85.714	ENSEEUG00000014515	CHD9	70	84.848	Erinaceus_europaeus
ENSSDUG00000006139	chd9	99	79.313	ENSELUG00000006031	chd9	99	79.509	Esox_lucius
ENSSDUG00000006139	chd9	95	69.740	ENSFCAG00000022534	CHD9	91	71.479	Felis_catus
ENSSDUG00000006139	chd9	99	68.807	ENSFALG00000013276	CHD9	97	70.780	Ficedula_albicollis
ENSSDUG00000006139	chd9	98	67.950	ENSFDAG00000021037	CHD9	84	70.397	Fukomys_damarensis
ENSSDUG00000006139	chd9	99	89.136	ENSFHEG00000006068	chd9	99	89.055	Fundulus_heteroclitus
ENSSDUG00000006139	chd9	80	87.331	ENSGMOG00000006040	chd9	84	87.195	Gadus_morhua
ENSSDUG00000006139	chd9	92	71.489	ENSGALG00000039178	CHD9	80	72.136	Gallus_gallus
ENSSDUG00000006139	chd9	99	89.931	ENSGAFG00000010014	chd9	99	90.133	Gambusia_affinis
ENSSDUG00000006139	chd9	96	87.583	ENSGACG00000016694	chd9	68	90.954	Gasterosteus_aculeatus
ENSSDUG00000006139	chd9	98	68.209	ENSGGOG00000014816	CHD9	91	70.775	Gorilla_gorilla
ENSSDUG00000006139	chd9	99	90.146	ENSHBUG00000023322	chd9	99	90.858	Haplochromis_burtoni
ENSSDUG00000006139	chd9	95	69.552	ENSHGLG00000014938	CHD9	99	77.580	Heterocephalus_glaber_female
ENSSDUG00000006139	chd9	96	84.124	ENSHCOG00000000937	chd9	97	84.323	Hippocampus_comes
ENSSDUG00000006139	chd9	99	79.167	ENSIPUG00000016448	chd9	97	82.807	Ictalurus_punctatus
ENSSDUG00000006139	chd9	94	70.735	ENSSTOG00000022273	CHD9	99	78.024	Ictidomys_tridecemlineatus
ENSSDUG00000006139	chd9	82	68.452	ENSJJAG00000015741	-	96	70.372	Jaculus_jaculus
ENSSDUG00000006139	chd9	99	89.484	ENSKMAG00000016784	chd9	99	89.751	Kryptolebias_marmoratus
ENSSDUG00000006139	chd9	99	91.241	ENSLBEG00000012077	chd9	99	91.359	Labrus_bergylta
ENSSDUG00000006139	chd9	95	65.831	ENSLACG00000005557	CHD9	97	59.547	Latimeria_chalumnae
ENSSDUG00000006139	chd9	99	76.423	ENSLOCG00000007225	chd9	99	75.902	Lepisosteus_oculatus
ENSSDUG00000006139	chd9	67	74.511	ENSLAFG00000015374	CHD9	84	70.008	Loxodonta_africana
ENSSDUG00000006139	chd9	94	69.521	ENSMFAG00000041354	CHD9	95	70.269	Macaca_fascicularis
ENSSDUG00000006139	chd9	67	74.672	ENSMMUG00000016310	CHD9	91	70.423	Macaca_mulatta
ENSSDUG00000006139	chd9	98	67.981	ENSMNEG00000031494	CHD9	85	71.887	Macaca_nemestrina
ENSSDUG00000006139	chd9	67	74.672	ENSMLEG00000043219	CHD9	91	70.423	Mandrillus_leucophaeus
ENSSDUG00000006139	chd9	99	92.367	ENSMAMG00000003909	chd9	99	88.668	Mastacembelus_armatus
ENSSDUG00000006139	chd9	99	91.995	ENSMZEG00005006581	chd9	99	92.196	Maylandia_zebra
ENSSDUG00000006139	chd9	98	65.111	ENSMGAG00000004642	CHD9	59	72.623	Meleagris_gallopavo
ENSSDUG00000006139	chd9	95	70.042	ENSMICG00000016679	CHD9	91	71.479	Microcebus_murinus
ENSSDUG00000006139	chd9	97	87.526	ENSMMOG00000016406	chd9	99	83.966	Mola_mola
ENSSDUG00000006139	chd9	86	65.263	ENSMODG00000013142	-	95	77.555	Monodelphis_domestica
ENSSDUG00000006139	chd9	97	89.761	ENSMALG00000013306	chd9	99	86.445	Monopterus_albus
ENSSDUG00000006139	chd9	67	73.903	MGP_CAROLIEiJ_G0031364	Chd9	60	75.258	Mus_caroli
ENSSDUG00000006139	chd9	95	69.311	ENSMUSG00000056608	Chd9	99	77.232	Mus_musculus
ENSSDUG00000006139	chd9	67	73.934	MGP_PahariEiJ_G0022964	Chd9	79	69.168	Mus_pahari
ENSSDUG00000006139	chd9	67	73.843	MGP_SPRETEiJ_G0032483	Chd9	79	70.128	Mus_spretus
ENSSDUG00000006139	chd9	98	68.072	ENSMPUG00000003285	CHD9	84	70.497	Mustela_putorius_furo
ENSSDUG00000006139	chd9	65	75.881	ENSMLUG00000004456	CHD9	79	69.853	Myotis_lucifugus
ENSSDUG00000006139	chd9	99	92.912	ENSNBRG00000009423	chd9	99	92.750	Neolamprologus_brichardi
ENSSDUG00000006139	chd9	85	70.956	ENSNLEG00000001026	CHD9	85	71.961	Nomascus_leucogenys
ENSSDUG00000006139	chd9	73	95.489	ENSMEUG00000008222	-	69	92.208	Notamacropus_eugenii
ENSSDUG00000006139	chd9	98	68.521	ENSODEG00000004466	CHD9	84	70.319	Octodon_degus
ENSSDUG00000006139	chd9	97	90.879	ENSONIG00000002816	chd9	98	90.797	Oreochromis_niloticus
ENSSDUG00000006139	chd9	68	75.000	ENSOANG00000013401	CHD9	79	71.659	Ornithorhynchus_anatinus
ENSSDUG00000006139	chd9	99	68.032	ENSOCUG00000001016	CHD9	96	69.077	Oryctolagus_cuniculus
ENSSDUG00000006139	chd9	96	88.398	ENSORLG00000013810	chd9	96	87.683	Oryzias_latipes
ENSSDUG00000006139	chd9	97	83.506	ENSORLG00020020665	chd9	95	81.712	Oryzias_latipes_hni
ENSSDUG00000006139	chd9	97	88.424	ENSORLG00015019126	chd9	97	87.611	Oryzias_latipes_hsok
ENSSDUG00000006139	chd9	55	90.598	ENSOMEG00000015978	chd9	99	82.729	Oryzias_melastigma
ENSSDUG00000006139	chd9	95	69.421	ENSOGAG00000002110	CHD9	89	67.075	Otolemur_garnettii
ENSSDUG00000006139	chd9	95	69.336	ENSOARG00000017664	CHD9	84	70.130	Ovis_aries
ENSSDUG00000006139	chd9	96	67.931	ENSPPAG00000039388	-	96	70.156	Pan_paniscus
ENSSDUG00000006139	chd9	95	69.781	ENSPPRG00000004801	CHD9	91	71.127	Panthera_pardus
ENSSDUG00000006139	chd9	95	68.665	ENSPTIG00000021854	CHD9	91	62.676	Panthera_tigris_altaica
ENSSDUG00000006139	chd9	98	68.249	ENSPTRG00000008113	CHD9	91	70.775	Pan_troglodytes
ENSSDUG00000006139	chd9	99	67.832	ENSPANG00000019307	CHD9	97	69.074	Papio_anubis
ENSSDUG00000006139	chd9	97	71.657	ENSPKIG00000025401	-	84	70.774	Paramormyrops_kingsleyae
ENSSDUG00000006139	chd9	97	78.230	ENSPKIG00000021876	chd9	96	79.808	Paramormyrops_kingsleyae
ENSSDUG00000006139	chd9	56	76.956	ENSPSIG00000008099	CHD9	78	78.640	Pelodiscus_sinensis
ENSSDUG00000006139	chd9	86	72.350	ENSPCIG00000017215	CHD9	99	72.373	Phascolarctos_cinereus
ENSSDUG00000006139	chd9	99	90.097	ENSPFOG00000015839	chd9	99	85.168	Poecilia_formosa
ENSSDUG00000006139	chd9	99	90.097	ENSPLAG00000011118	chd9	99	89.421	Poecilia_latipinna
ENSSDUG00000006139	chd9	99	86.758	ENSPMEG00000015106	chd9	99	81.457	Poecilia_mexicana
ENSSDUG00000006139	chd9	96	90.973	ENSPREG00000006473	chd9	99	89.964	Poecilia_reticulata
ENSSDUG00000006139	chd9	99	59.727	ENSPPYG00000007348	CHD9	84	70.197	Pongo_abelii
ENSSDUG00000006139	chd9	69	79.927	ENSPCAG00000007564	CHD9	74	81.461	Procavia_capensis
ENSSDUG00000006139	chd9	98	66.600	ENSPCOG00000028433	CHD9	91	70.423	Propithecus_coquereli
ENSSDUG00000006139	chd9	90	74.048	ENSPVAG00000015617	CHD9	81	73.889	Pteropus_vampyrus
ENSSDUG00000006139	chd9	99	91.794	ENSPNYG00000010947	chd9	99	91.472	Pundamilia_nyererei
ENSSDUG00000006139	chd9	99	77.605	ENSPNAG00000024141	chd9	99	77.467	Pygocentrus_nattereri
ENSSDUG00000006139	chd9	86	67.901	ENSRNOG00000049302	Chd9	75	81.121	Rattus_norvegicus
ENSSDUG00000006139	chd9	98	68.249	ENSRBIG00000035553	CHD9	96	70.412	Rhinopithecus_bieti
ENSSDUG00000006139	chd9	96	69.058	ENSRROG00000033278	CHD9	96	70.239	Rhinopithecus_roxellana
ENSSDUG00000006139	chd9	98	68.385	ENSSBOG00000030240	CHD9	91	70.423	Saimiri_boliviensis_boliviensis
ENSSDUG00000006139	chd9	98	68.745	ENSSHAG00000002719	CHD9	84	70.888	Sarcophilus_harrisii
ENSSDUG00000006139	chd9	99	73.245	ENSSFOG00015001327	chd9	96	75.010	Scleropages_formosus
ENSSDUG00000006139	chd9	96	79.682	ENSSFOG00015020209	chd9	99	77.719	Scleropages_formosus
ENSSDUG00000006139	chd9	99	92.530	ENSSMAG00000008953	chd9	99	92.794	Scophthalmus_maximus
ENSSDUG00000006139	chd9	100	99.000	ENSSLDG00000017818	chd9	100	99.000	Seriola_lalandi_dorsalis
ENSSDUG00000006139	chd9	71	77.000	ENSSARG00000010632	CHD9	56	76.955	Sorex_araneus
ENSSDUG00000006139	chd9	99	93.712	ENSSPAG00000021649	chd9	99	93.632	Stegastes_partitus
ENSSDUG00000006139	chd9	98	67.492	ENSSSCG00000033591	CHD9	61	75.423	Sus_scrofa
ENSSDUG00000006139	chd9	86	72.368	ENSTGUG00000007476	CHD9	86	73.660	Taeniopygia_guttata
ENSSDUG00000006139	chd9	99	86.093	ENSTRUG00000009125	chd9	99	81.453	Takifugu_rubripes
ENSSDUG00000006139	chd9	77	69.794	ENSTNIG00000003825	chd9	84	99.408	Tetraodon_nigroviridis
ENSSDUG00000006139	chd9	60	94.915	ENSTBEG00000016052	-	64	94.737	Tupaia_belangeri
ENSSDUG00000006139	chd9	81	75.489	ENSTTRG00000012674	CHD9	77	70.816	Tursiops_truncatus
ENSSDUG00000006139	chd9	76	66.632	ENSUAMG00000022706	CHD9	95	68.607	Ursus_americanus
ENSSDUG00000006139	chd9	77	86.225	ENSUMAG00000004043	CHD9	96	86.589	Ursus_maritimus
ENSSDUG00000006139	chd9	97	67.543	ENSVPAG00000001374	CHD9	81	69.107	Vicugna_pacos
ENSSDUG00000006139	chd9	67	74.926	ENSVVUG00000019435	CHD9	84	70.791	Vulpes_vulpes
ENSSDUG00000006139	chd9	97	67.250	ENSXETG00000000349	chd9	78	75.608	Xenopus_tropicalis
ENSSDUG00000006139	chd9	99	88.212	ENSXCOG00000012997	chd9	99	88.615	Xiphophorus_couchianus
ENSSDUG00000006139	chd9	99	89.520	ENSXMAG00000016192	chd9	99	89.799	Xiphophorus_maculatus