EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000006164 (Gene tree)
Gene ID: 111235597
Gene Symbol: si:ch211-212k18.5
Alias: fb25b09|wu:fb25b09
Full Name: spalt like transcription factor 2
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 5586 bases
Position: chrBDQW01000531.1:289218-294803
Accession: 111235597
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000008397	zf-C2H2	PF00096.26	5.9e-19	1	2
ENSSDUP00000008397	zf-C2H2	PF00096.26	5.9e-19	2	2
ENSSDUP00000008397	zf-met	PF12874.7	8.2e-11	1	2
ENSSDUP00000008397	zf-met	PF12874.7	8.2e-11	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000008547	-	3624	XM_022764106	ENSSDUP00000008397	1207 (aa)	XP_022619827	-

Gene Model

Click here to download ENSSDUG00000006164's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000006164's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000006164	si:ch211-212k18.5	95	39.478	ENSSDUG00000012274	sall2	69	39.782

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000006164	si:ch211-212k18.5	100	82.834	ENSAPOG00000013387	si:ch211-212k18.5	100	82.915	Acanthochromis_polyacanthus
ENSSDUG00000006164	si:ch211-212k18.5	95	40.000	ENSAPOG00000015347	sall2	87	40.627	Acanthochromis_polyacanthus
ENSSDUG00000006164	si:ch211-212k18.5	79	83.809	ENSACIG00000019922	si:ch211-212k18.5	99	85.321	Amphilophus_citrinellus
ENSSDUG00000006164	si:ch211-212k18.5	70	40.538	ENSAOCG00000016559	sall2	94	40.304	Amphiprion_ocellaris
ENSSDUG00000006164	si:ch211-212k18.5	100	83.706	ENSAOCG00000010737	si:ch211-212k18.5	100	84.450	Amphiprion_ocellaris
ENSSDUG00000006164	si:ch211-212k18.5	100	83.706	ENSAPEG00000006751	si:ch211-212k18.5	100	84.450	Amphiprion_percula
ENSSDUG00000006164	si:ch211-212k18.5	50	46.705	ENSAPEG00000020215	sall2	84	48.205	Amphiprion_percula
ENSSDUG00000006164	si:ch211-212k18.5	77	85.714	ENSATEG00000001254	si:ch211-212k18.5	100	86.514	Anabas_testudineus
ENSSDUG00000006164	si:ch211-212k18.5	100	77.635	ENSACLG00000009709	si:ch211-212k18.5	100	77.796	Astatotilapia_calliptera
ENSSDUG00000006164	si:ch211-212k18.5	99	57.541	ENSAMXG00000010979	si:ch211-212k18.5	99	56.864	Astyanax_mexicanus
ENSSDUG00000006164	si:ch211-212k18.5	99	75.990	ENSCSEG00000004426	si:ch211-212k18.5	99	75.667	Cynoglossus_semilaevis
ENSSDUG00000006164	si:ch211-212k18.5	99	72.528	ENSCVAG00000007475	si:ch211-212k18.5	99	73.987	Cyprinodon_variegatus
ENSSDUG00000006164	si:ch211-212k18.5	65	46.644	ENSDARG00000075116	sall2	59	48.023	Danio_rerio
ENSSDUG00000006164	si:ch211-212k18.5	96	56.748	ENSDARG00000103316	si:ch211-212k18.5	96	56.329	Danio_rerio
ENSSDUG00000006164	si:ch211-212k18.5	99	58.725	ENSELUG00000024534	si:ch211-212k18.5	99	57.803	Esox_lucius
ENSSDUG00000006164	si:ch211-212k18.5	71	65.714	ENSELUG00000004389	sall2	66	51.441	Esox_lucius
ENSSDUG00000006164	si:ch211-212k18.5	53	46.606	ENSFHEG00000017550	sall2	59	46.255	Fundulus_heteroclitus
ENSSDUG00000006164	si:ch211-212k18.5	99	74.838	ENSFHEG00000017264	si:ch211-212k18.5	99	75.325	Fundulus_heteroclitus
ENSSDUG00000006164	si:ch211-212k18.5	99	74.209	ENSGAFG00000003746	si:ch211-212k18.5	100	74.311	Gambusia_affinis
ENSSDUG00000006164	si:ch211-212k18.5	53	47.258	ENSGAFG00000015194	sall2	59	46.702	Gambusia_affinis
ENSSDUG00000006164	si:ch211-212k18.5	100	77.796	ENSHBUG00000019672	si:ch211-212k18.5	100	77.957	Haplochromis_burtoni
ENSSDUG00000006164	si:ch211-212k18.5	69	44.135	ENSHBUG00000002882	sall2	74	39.151	Haplochromis_burtoni
ENSSDUG00000006164	si:ch211-212k18.5	97	64.626	ENSHCOG00000002842	si:ch211-212k18.5	98	63.384	Hippocampus_comes
ENSSDUG00000006164	si:ch211-212k18.5	98	54.184	ENSIPUG00000002559	sall2	99	52.862	Ictalurus_punctatus
ENSSDUG00000006164	si:ch211-212k18.5	99	73.226	ENSKMAG00000019657	si:ch211-212k18.5	100	73.994	Kryptolebias_marmoratus
ENSSDUG00000006164	si:ch211-212k18.5	100	78.798	ENSLBEG00000020887	si:ch211-212k18.5	100	78.554	Labrus_bergylta
ENSSDUG00000006164	si:ch211-212k18.5	69	89.070	ENSMAMG00000015887	si:ch211-212k18.5	99	88.605	Mastacembelus_armatus
ENSSDUG00000006164	si:ch211-212k18.5	69	44.135	ENSMZEG00005012103	sall2	74	39.151	Maylandia_zebra
ENSSDUG00000006164	si:ch211-212k18.5	100	77.715	ENSMZEG00005021214	si:ch211-212k18.5	100	77.876	Maylandia_zebra
ENSSDUG00000006164	si:ch211-212k18.5	92	84.797	ENSMMOG00000012726	si:ch211-212k18.5	100	84.459	Mola_mola
ENSSDUG00000006164	si:ch211-212k18.5	92	81.288	ENSMALG00000000979	si:ch211-212k18.5	97	81.984	Monopterus_albus
ENSSDUG00000006164	si:ch211-212k18.5	94	78.051	ENSNBRG00000023948	si:ch211-212k18.5	96	78.051	Neolamprologus_brichardi
ENSSDUG00000006164	si:ch211-212k18.5	68	46.801	ENSNBRG00000017645	sall2	76	45.866	Neolamprologus_brichardi
ENSSDUG00000006164	si:ch211-212k18.5	99	71.652	ENSORLG00000030429	si:ch211-212k18.5	99	71.675	Oryzias_latipes
ENSSDUG00000006164	si:ch211-212k18.5	99	71.323	ENSORLG00020008145	si:ch211-212k18.5	99	71.593	Oryzias_latipes_hni
ENSSDUG00000006164	si:ch211-212k18.5	99	71.241	ENSORLG00015004982	si:ch211-212k18.5	99	71.346	Oryzias_latipes_hsok
ENSSDUG00000006164	si:ch211-212k18.5	100	69.984	ENSOMEG00000013949	si:ch211-212k18.5	100	70.379	Oryzias_melastigma
ENSSDUG00000006164	si:ch211-212k18.5	53	46.466	ENSOMEG00000012904	sall2	59	45.729	Oryzias_melastigma
ENSSDUG00000006164	si:ch211-212k18.5	94	66.580	ENSPMGG00000018714	si:ch211-212k18.5	99	67.012	Periophthalmus_magnuspinnatus
ENSSDUG00000006164	si:ch211-212k18.5	61	63.415	ENSPFOG00000016504	sall2	65	47.125	Poecilia_formosa
ENSSDUG00000006164	si:ch211-212k18.5	99	75.347	ENSPFOG00000023705	si:ch211-212k18.5	99	76.511	Poecilia_formosa
ENSSDUG00000006164	si:ch211-212k18.5	61	63.415	ENSPLAG00000018320	sall2	59	46.675	Poecilia_latipinna
ENSSDUG00000006164	si:ch211-212k18.5	99	74.551	ENSPLAG00000002577	si:ch211-212k18.5	100	75.223	Poecilia_latipinna
ENSSDUG00000006164	si:ch211-212k18.5	56	63.415	ENSPMEG00000006335	sall2	59	45.893	Poecilia_mexicana
ENSSDUG00000006164	si:ch211-212k18.5	99	75.184	ENSPMEG00000016395	si:ch211-212k18.5	99	76.339	Poecilia_mexicana
ENSSDUG00000006164	si:ch211-212k18.5	100	74.413	ENSPREG00000005292	si:ch211-212k18.5	100	74.494	Poecilia_reticulata
ENSSDUG00000006164	si:ch211-212k18.5	100	77.467	ENSPNYG00000021576	si:ch211-212k18.5	100	77.714	Pundamilia_nyererei
ENSSDUG00000006164	si:ch211-212k18.5	57	45.385	ENSPNAG00000021463	sall2	58	48.506	Pygocentrus_nattereri
ENSSDUG00000006164	si:ch211-212k18.5	98	58.477	ENSPNAG00000006123	si:ch211-212k18.5	98	57.959	Pygocentrus_nattereri
ENSSDUG00000006164	si:ch211-212k18.5	100	85.430	ENSSMAG00000006241	si:ch211-212k18.5	100	85.596	Scophthalmus_maximus
ENSSDUG00000006164	si:ch211-212k18.5	100	98.840	ENSSLDG00000003393	si:ch211-212k18.5	100	98.840	Seriola_lalandi_dorsalis
ENSSDUG00000006164	si:ch211-212k18.5	68	44.838	ENSSLDG00000001653	sall2	69	40.020	Seriola_lalandi_dorsalis
ENSSDUG00000006164	si:ch211-212k18.5	94	85.727	ENSSPAG00000013435	si:ch211-212k18.5	97	85.727	Stegastes_partitus
ENSSDUG00000006164	si:ch211-212k18.5	87	40.345	ENSSPAG00000023009	sall2	94	38.610	Stegastes_partitus
ENSSDUG00000006164	si:ch211-212k18.5	87	78.813	ENSTRUG00000025082	si:ch211-212k18.5	95	76.993	Takifugu_rubripes
ENSSDUG00000006164	si:ch211-212k18.5	99	75.187	ENSXCOG00000000762	si:ch211-212k18.5	100	75.083	Xiphophorus_couchianus
ENSSDUG00000006164	si:ch211-212k18.5	53	46.632	ENSXMAG00000000902	sall2	59	46.224	Xiphophorus_maculatus
ENSSDUG00000006164	si:ch211-212k18.5	99	74.041	ENSXMAG00000001461	si:ch211-212k18.5	100	73.948	Xiphophorus_maculatus