EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000006278 (Gene tree)
Gene ID: 111222643
Gene Symbol: rab11al
Alias: fc54g10|wu:fc54g10|zgc:63565
Full Name: ras-related protein Rab-11A-like
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 9244 bases
Position: chrBDQW01000104.1:461129-470372
Accession: 111222643
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000008559	MMR_HSR1	PF01926.23	3.7e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000008718	-	1131	XM_022746439	ENSSDUP00000008559	216 (aa)	XP_022602160	UPI000875700B

Gene Model

Click here to download ENSSDUG00000006278's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu04144	Endocytosis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000006278's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000006278	rab11al	73	49.045	ENSSDUG00000023008	rab5c	71	49.045
ENSSDUG00000006278	rab11al	77	74.850	ENSSDUG00000009735	rab25a	80	74.850
ENSSDUG00000006278	rab11al	78	42.012	ENSSDUG00000006618	RAB17	74	42.012
ENSSDUG00000006278	rab11al	72	32.278	ENSSDUG00000010675	si:ch73-116o1.2	91	30.542
ENSSDUG00000006278	rab11al	53	33.333	ENSSDUG00000017586	-	58	33.333
ENSSDUG00000006278	rab11al	79	31.818	ENSSDUG00000010942	rab34a	66	31.818
ENSSDUG00000006278	rab11al	96	47.826	ENSSDUG00000022535	RAB1A	99	47.826
ENSSDUG00000006278	rab11al	94	33.971	ENSSDUG00000003386	rab9a	97	33.971
ENSSDUG00000006278	rab11al	73	36.306	ENSSDUG00000014765	rabl2	69	36.306
ENSSDUG00000006278	rab11al	75	30.233	ENSSDUG00000022959	rasl11b	68	30.233
ENSSDUG00000006278	rab11al	80	52.023	ENSSDUG00000013050	-	80	52.023
ENSSDUG00000006278	rab11al	74	30.435	ENSSDUG00000016858	-	87	30.435
ENSSDUG00000006278	rab11al	94	42.857	ENSSDUG00000014091	-	97	42.857
ENSSDUG00000006278	rab11al	74	46.875	ENSSDUG00000013325	rab30	79	46.875
ENSSDUG00000006278	rab11al	73	47.771	ENSSDUG00000009835	rab5aa	73	47.771
ENSSDUG00000006278	rab11al	73	42.675	ENSSDUG00000017131	rab22a	81	42.675
ENSSDUG00000006278	rab11al	99	86.047	ENSSDUG00000002580	rab11a	99	86.047
ENSSDUG00000006278	rab11al	75	45.062	ENSSDUG00000003823	rab18a	79	45.062
ENSSDUG00000006278	rab11al	92	50.000	ENSSDUG00000013724	rab2a	97	49.744
ENSSDUG00000006278	rab11al	74	44.654	ENSSDUG00000005627	rab15	75	44.654
ENSSDUG00000006278	rab11al	98	46.009	ENSSDUG00000016888	rab1ab	99	41.350
ENSSDUG00000006278	rab11al	79	38.150	ENSSDUG00000008151	zgc:101559	74	38.150
ENSSDUG00000006278	rab11al	99	82.949	ENSSDUG00000002934	-	99	82.949
ENSSDUG00000006278	rab11al	67	40.816	ENSSDUG00000001791	rab33ba	61	40.816
ENSSDUG00000006278	rab11al	72	40.994	ENSSDUG00000007575	rab9b	79	40.994
ENSSDUG00000006278	rab11al	75	37.267	ENSSDUG00000018970	RAB6B	76	37.267
ENSSDUG00000006278	rab11al	93	32.367	ENSSDUG00000016760	rab34b	64	32.367
ENSSDUG00000006278	rab11al	74	33.540	ENSSDUG00000009122	rheb	87	33.540
ENSSDUG00000006278	rab11al	88	33.158	ENSSDUG00000021882	rab6ba	91	33.158
ENSSDUG00000006278	rab11al	75	41.975	ENSSDUG00000004633	RAB15	76	41.975
ENSSDUG00000006278	rab11al	99	82.028	ENSSDUG00000013558	rab11bb	99	82.028
ENSSDUG00000006278	rab11al	86	33.333	ENSSDUG00000009251	rab6bb	91	33.333
ENSSDUG00000006278	rab11al	99	83.871	ENSSDUG00000002965	rab11ba	99	83.871
ENSSDUG00000006278	rab11al	96	41.063	ENSSDUG00000004950	rab35b	99	42.654
ENSSDUG00000006278	rab11al	76	41.818	ENSSDUG00000008505	rab12	84	37.619
ENSSDUG00000006278	rab11al	78	33.728	ENSSDUG00000023508	rab23	90	34.043
ENSSDUG00000006278	rab11al	72	35.404	ENSSDUG00000019738	si:dkey-13a21.4	78	35.625
ENSSDUG00000006278	rab11al	67	43.333	ENSSDUG00000019885	-	62	43.333
ENSSDUG00000006278	rab11al	77	54.217	ENSSDUG00000004551	rab14	77	54.217
ENSSDUG00000006278	rab11al	71	32.704	ENSSDUG00000006543	RAB29	79	32.704
ENSSDUG00000006278	rab11al	96	46.377	ENSSDUG00000004698	rab1ba	99	46.377
ENSSDUG00000006278	rab11al	69	34.667	ENSSDUG00000017779	kras	85	35.802
ENSSDUG00000006278	rab11al	53	30.252	ENSSDUG00000012868	arl4cb	60	30.252
ENSSDUG00000006278	rab11al	78	39.306	ENSSDUG00000008011	-	82	39.306
ENSSDUG00000006278	rab11al	66	31.944	ENSSDUG00000014082	si:cabz01085950.1	71	31.944
ENSSDUG00000006278	rab11al	74	49.057	ENSSDUG00000006307	-	83	49.359
ENSSDUG00000006278	rab11al	93	33.168	ENSSDUG00000013496	-	93	33.168
ENSSDUG00000006278	rab11al	69	35.333	ENSSDUG00000019086	hrasb	85	36.420
ENSSDUG00000006278	rab11al	80	70.930	ENSSDUG00000006260	rab25b	88	70.930
ENSSDUG00000006278	rab11al	81	43.678	ENSSDUG00000005719	si:dkey-16l2.16	98	38.942
ENSSDUG00000006278	rab11al	95	40.000	ENSSDUG00000011851	rab42a	98	40.000
ENSSDUG00000006278	rab11al	75	36.747	ENSSDUG00000005037	-	78	36.747
ENSSDUG00000006278	rab11al	75	46.296	ENSSDUG00000005960	rab18b	79	46.296
ENSSDUG00000006278	rab11al	73	41.104	ENSSDUG00000013968	rab33a	68	41.104
ENSSDUG00000006278	rab11al	71	32.121	ENSSDUG00000015078	rasl11a	64	32.121
ENSSDUG00000006278	rab11al	96	44.550	ENSSDUG00000004445	zgc:171927	99	44.550

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000006278	rab11al	100	95.833	ENSAPOG00000008251	rab11al	100	95.833	Acanthochromis_polyacanthus
ENSSDUG00000006278	rab11al	100	98.611	ENSACIG00000017403	rab11al	100	98.611	Amphilophus_citrinellus
ENSSDUG00000006278	rab11al	100	98.611	ENSAOCG00000015678	rab11al	100	98.611	Amphiprion_ocellaris
ENSSDUG00000006278	rab11al	100	98.611	ENSAPEG00000022135	rab11al	100	98.611	Amphiprion_percula
ENSSDUG00000006278	rab11al	100	97.685	ENSATEG00000006156	rab11al	100	97.685	Anabas_testudineus
ENSSDUG00000006278	rab11al	100	98.611	ENSACLG00000010268	rab11al	100	98.611	Astatotilapia_calliptera
ENSSDUG00000006278	rab11al	94	86.700	ENSAMXG00000024632	rab11al	93	86.700	Astyanax_mexicanus
ENSSDUG00000006278	rab11al	94	79.703	ENSCPBG00000025819	-	99	79.703	Chrysemys_picta_bellii
ENSSDUG00000006278	rab11al	100	97.222	ENSCSEG00000011996	rab11al	100	97.222	Cynoglossus_semilaevis
ENSSDUG00000006278	rab11al	100	93.519	ENSCVAG00000020016	rab11al	100	93.519	Cyprinodon_variegatus
ENSSDUG00000006278	rab11al	100	91.667	ENSDARG00000014340	rab11al	100	91.667	Danio_rerio
ENSSDUG00000006278	rab11al	100	93.056	ENSELUG00000012035	rab11al	100	93.056	Esox_lucius
ENSSDUG00000006278	rab11al	99	80.374	ENSFALG00000002594	-	91	80.374	Ficedula_albicollis
ENSSDUG00000006278	rab11al	96	94.712	ENSFHEG00000000832	rab11al	99	94.712	Fundulus_heteroclitus
ENSSDUG00000006278	rab11al	94	89.604	ENSGMOG00000006450	rab11al	100	89.604	Gadus_morhua
ENSSDUG00000006278	rab11al	99	78.140	ENSGALG00000037802	-	50	78.140	Gallus_gallus
ENSSDUG00000006278	rab11al	100	92.593	ENSGAFG00000021725	rab11al	100	92.593	Gambusia_affinis
ENSSDUG00000006278	rab11al	100	99.074	ENSGACG00000013259	rab11al	100	99.074	Gasterosteus_aculeatus
ENSSDUG00000006278	rab11al	99	80.000	ENSGAGG00000020702	-	99	80.000	Gopherus_agassizii
ENSSDUG00000006278	rab11al	100	98.611	ENSHBUG00000009333	rab11al	100	98.611	Haplochromis_burtoni
ENSSDUG00000006278	rab11al	100	96.296	ENSHCOG00000000232	rab11al	100	96.296	Hippocampus_comes
ENSSDUG00000006278	rab11al	100	93.056	ENSIPUG00000006091	RAB11A	100	93.056	Ictalurus_punctatus
ENSSDUG00000006278	rab11al	100	91.667	ENSKMAG00000015516	rab11al	100	91.667	Kryptolebias_marmoratus
ENSSDUG00000006278	rab11al	100	96.296	ENSLBEG00000016417	rab11al	100	96.296	Labrus_bergylta
ENSSDUG00000006278	rab11al	99	79.070	ENSLACG00000011380	rab11al	99	79.070	Latimeria_chalumnae
ENSSDUG00000006278	rab11al	100	93.981	ENSLOCG00000008865	rab11al	100	93.981	Lepisosteus_oculatus
ENSSDUG00000006278	rab11al	100	98.611	ENSMAMG00000010278	rab11al	100	98.611	Mastacembelus_armatus
ENSSDUG00000006278	rab11al	100	98.611	ENSMZEG00005017514	rab11al	100	98.611	Maylandia_zebra
ENSSDUG00000006278	rab11al	75	88.820	ENSMGAG00000004720	-	95	88.820	Meleagris_gallopavo
ENSSDUG00000006278	rab11al	79	97.661	ENSMMOG00000017117	rab11al	84	97.661	Mola_mola
ENSSDUG00000006278	rab11al	100	96.296	ENSMALG00000004093	rab11al	100	96.296	Monopterus_albus
ENSSDUG00000006278	rab11al	100	98.148	ENSNBRG00000005116	rab11al	100	98.148	Neolamprologus_brichardi
ENSSDUG00000006278	rab11al	100	99.074	ENSONIG00000002281	rab11al	100	99.074	Oreochromis_niloticus
ENSSDUG00000006278	rab11al	100	95.833	ENSORLG00000016126	rab11al	100	95.833	Oryzias_latipes
ENSSDUG00000006278	rab11al	100	95.833	ENSORLG00020013747	rab11al	100	95.833	Oryzias_latipes_hni
ENSSDUG00000006278	rab11al	100	95.833	ENSORLG00015019591	rab11al	100	95.833	Oryzias_latipes_hsok
ENSSDUG00000006278	rab11al	100	95.833	ENSOMEG00000020271	rab11al	100	95.833	Oryzias_melastigma
ENSSDUG00000006278	rab11al	100	90.741	ENSPKIG00000020893	rab11al	100	90.741	Paramormyrops_kingsleyae
ENSSDUG00000006278	rab11al	99	78.605	ENSPSIG00000013143	-	99	78.605	Pelodiscus_sinensis
ENSSDUG00000006278	rab11al	100	91.204	ENSPMGG00000004220	rab11al	100	91.204	Periophthalmus_magnuspinnatus
ENSSDUG00000006278	rab11al	100	93.519	ENSPFOG00000011316	rab11al	100	93.519	Poecilia_formosa
ENSSDUG00000006278	rab11al	100	93.519	ENSPLAG00000007986	rab11al	100	93.519	Poecilia_latipinna
ENSSDUG00000006278	rab11al	100	93.519	ENSPMEG00000000804	rab11al	100	93.519	Poecilia_mexicana
ENSSDUG00000006278	rab11al	100	93.519	ENSPREG00000017324	rab11al	100	93.519	Poecilia_reticulata
ENSSDUG00000006278	rab11al	100	98.611	ENSPNYG00000018244	rab11al	100	98.611	Pundamilia_nyererei
ENSSDUG00000006278	rab11al	100	93.056	ENSPNAG00000029085	rab11al	100	93.056	Pygocentrus_nattereri
ENSSDUG00000006278	rab11al	100	92.130	ENSSFOG00015008618	rab11al	100	92.130	Scleropages_formosus
ENSSDUG00000006278	rab11al	100	98.611	ENSSMAG00000016206	rab11al	100	98.611	Scophthalmus_maximus
ENSSDUG00000006278	rab11al	100	100.000	ENSSLDG00000012116	rab11al	100	100.000	Seriola_lalandi_dorsalis
ENSSDUG00000006278	rab11al	98	78.774	ENSSPUG00000002526	-	98	78.774	Sphenodon_punctatus
ENSSDUG00000006278	rab11al	100	97.685	ENSSPAG00000012044	rab11al	100	97.685	Stegastes_partitus
ENSSDUG00000006278	rab11al	94	82.178	ENSTGUG00000003680	-	99	82.178	Taeniopygia_guttata
ENSSDUG00000006278	rab11al	99	95.327	ENSTRUG00000007556	rab11al	99	95.327	Takifugu_rubripes
ENSSDUG00000006278	rab11al	100	92.593	ENSXCOG00000004226	rab11al	100	92.593	Xiphophorus_couchianus
ENSSDUG00000006278	rab11al	100	92.593	ENSXMAG00000027071	rab11al	100	92.593	Xiphophorus_maculatus