EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000006307 (Gene tree)
Gene ID: 111230159
Gene Symbol: -
Alias: -
Full Name: RAB13%2C member RAS oncogene family
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 5632 bases
Position: chrBDQW01000258.1:533853-539484
Accession: 111230159
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000008597	MMR_HSR1	PF01926.23	6.2e-05	1	1
ENSSDUP00000008620	MMR_HSR1	PF01926.23	6.3e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000008756	-	2851	XM_022756766	ENSSDUP00000008597	200 (aa)	XP_022612487	UPI000BBED05A
ENSSDUT00000008779	-	567	-	ENSSDUP00000008620	188 (aa)	-	-

Gene Model

Click here to download ENSSDUG00000006307's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu04530	Tight junction	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000006307's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000006307	-	77	32.237	ENSSDUG00000022959	rasl11b	61	32.237
ENSSDUG00000006307	-	86	55.280	ENSSDUG00000004950	rab35b	100	47.525
ENSSDUG00000006307	-	93	36.066	ENSSDUG00000019738	si:dkey-13a21.4	89	36.066
ENSSDUG00000006307	-	87	37.778	ENSSDUG00000006543	RAB29	88	37.778
ENSSDUG00000006307	-	90	44.865	ENSSDUG00000003823	rab18a	88	44.865
ENSSDUG00000006307	-	87	47.399	ENSSDUG00000013558	rab11bb	79	47.399
ENSSDUG00000006307	-	81	43.671	ENSSDUG00000017131	rab22a	83	39.752
ENSSDUG00000006307	-	84	42.012	ENSSDUG00000011851	rab42a	78	42.012
ENSSDUG00000006307	-	83	44.872	ENSSDUG00000009251	rab6bb	76	44.937
ENSSDUG00000006307	-	82	46.951	ENSSDUG00000005960	rab18b	80	46.951
ENSSDUG00000006307	-	96	34.896	ENSSDUG00000019086	hrasb	98	34.896
ENSSDUG00000006307	-	95	33.333	ENSSDUG00000009122	rheb	96	33.333
ENSSDUG00000006307	-	82	44.872	ENSSDUG00000008151	zgc:101559	70	43.902
ENSSDUG00000006307	-	93	37.629	ENSSDUG00000004119	rab36	64	37.629
ENSSDUG00000006307	-	97	38.942	ENSSDUG00000013050	-	97	38.942
ENSSDUG00000006307	-	85	56.875	ENSSDUG00000004633	RAB15	81	55.556
ENSSDUG00000006307	-	62	30.769	ENSSDUG00000013976	arl3	62	30.769
ENSSDUG00000006307	-	90	38.191	ENSSDUG00000001791	rab33ba	82	38.191
ENSSDUG00000006307	-	85	45.349	ENSSDUG00000014091	-	81	45.349
ENSSDUG00000006307	-	87	41.143	ENSSDUG00000023008	rab5c	80	41.143
ENSSDUG00000006307	-	80	40.260	ENSSDUG00000010942	rab34a	60	40.000
ENSSDUG00000006307	-	71	30.882	ENSSDUG00000021397	arl2	71	30.657
ENSSDUG00000006307	-	96	45.556	ENSSDUG00000013724	rab2a	88	45.556
ENSSDUG00000006307	-	90	32.973	ENSSDUG00000023163	rras2	94	33.503
ENSSDUG00000006307	-	81	30.769	ENSSDUG00000020340	-	74	30.769
ENSSDUG00000006307	-	85	50.625	ENSSDUG00000005719	si:dkey-16l2.16	87	47.802
ENSSDUG00000006307	-	91	56.906	ENSSDUG00000022535	RAB1A	89	56.906
ENSSDUG00000006307	-	60	36.283	ENSSDUG00000014258	RAP2B	89	36.800
ENSSDUG00000006307	-	86	48.538	ENSSDUG00000013325	rab30	84	48.538
ENSSDUG00000006307	-	86	32.317	ENSSDUG00000014765	rabl2	72	32.317
ENSSDUG00000006307	-	80	45.333	ENSSDUG00000006260	rab25b	83	44.720
ENSSDUG00000006307	-	81	32.370	ENSSDUG00000015078	rasl11a	67	32.370
ENSSDUG00000006307	-	84	39.157	ENSSDUG00000003386	rab9a	83	38.690
ENSSDUG00000006307	-	96	36.041	ENSSDUG00000017779	kras	98	35.751
ENSSDUG00000006307	-	75	30.065	ENSSDUG00000004762	-	80	30.065
ENSSDUG00000006307	-	95	35.922	ENSSDUG00000016760	rab34b	64	35.922
ENSSDUG00000006307	-	84	30.114	ENSSDUG00000003036	dnajc27	64	30.114
ENSSDUG00000006307	-	84	36.471	ENSSDUG00000010675	si:ch73-116o1.2	78	36.471
ENSSDUG00000006307	-	92	43.523	ENSSDUG00000002965	rab11ba	89	43.523
ENSSDUG00000006307	-	83	42.949	ENSSDUG00000018970	RAB6B	75	43.038
ENSSDUG00000006307	-	97	54.124	ENSSDUG00000004445	zgc:171927	88	54.124
ENSSDUG00000006307	-	59	35.714	ENSSDUG00000017824	-	86	36.290
ENSSDUG00000006307	-	83	44.872	ENSSDUG00000013496	-	76	44.937
ENSSDUG00000006307	-	94	41.837	ENSSDUG00000013968	rab33a	82	41.837
ENSSDUG00000006307	-	95	40.104	ENSSDUG00000009835	rab5aa	89	40.104
ENSSDUG00000006307	-	85	34.783	ENSSDUG00000006618	RAB17	71	34.356
ENSSDUG00000006307	-	82	45.806	ENSSDUG00000009735	rab25a	76	45.570
ENSSDUG00000006307	-	87	32.584	ENSSDUG00000014082	si:cabz01085950.1	87	32.584
ENSSDUG00000006307	-	87	47.399	ENSSDUG00000002934	-	79	47.399
ENSSDUG00000006307	-	88	35.593	ENSSDUG00000023508	rab23	90	35.450
ENSSDUG00000006307	-	88	37.989	ENSSDUG00000008011	-	86	37.989
ENSSDUG00000006307	-	84	41.566	ENSSDUG00000005037	-	78	41.667
ENSSDUG00000006307	-	95	54.359	ENSSDUG00000016888	rab1ab	98	47.162
ENSSDUG00000006307	-	83	49.359	ENSSDUG00000006278	rab11al	74	49.057
ENSSDUG00000006307	-	95	37.113	ENSSDUG00000007575	rab9b	95	37.113
ENSSDUG00000006307	-	83	44.231	ENSSDUG00000021882	rab6ba	83	42.197
ENSSDUG00000006307	-	86	50.581	ENSSDUG00000008505	rab12	71	50.581
ENSSDUG00000006307	-	82	35.897	ENSSDUG00000007311	rhebl1	84	35.897
ENSSDUG00000006307	-	80	32.258	ENSSDUG00000015982	rasd4	75	32.500
ENSSDUG00000006307	-	93	41.379	ENSSDUG00000004551	rab14	81	41.379
ENSSDUG00000006307	-	78	45.098	ENSSDUG00000019885	-	63	45.098
ENSSDUG00000006307	-	82	35.256	ENSSDUG00000016858	-	91	32.544
ENSSDUG00000006307	-	93	45.161	ENSSDUG00000002580	rab11a	87	45.161
ENSSDUG00000006307	-	88	55.429	ENSSDUG00000005627	rab15	82	55.429
ENSSDUG00000006307	-	91	54.696	ENSSDUG00000004698	rab1ba	89	54.696
ENSSDUG00000006307	-	61	30.894	ENSSDUG00000020599	-	66	30.894

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000006307	-	100	99.000	ENSAPOG00000001040	-	100	99.000	Acanthochromis_polyacanthus
ENSSDUG00000006307	-	100	66.667	ENSACIG00000003157	-	100	66.667	Amphilophus_citrinellus
ENSSDUG00000006307	-	100	99.000	ENSAOCG00000015908	-	100	99.000	Amphiprion_ocellaris
ENSSDUG00000006307	-	100	99.000	ENSAPEG00000004121	-	100	99.000	Amphiprion_percula
ENSSDUG00000006307	-	100	94.000	ENSATEG00000023662	-	100	94.000	Anabas_testudineus
ENSSDUG00000006307	-	100	96.500	ENSACLG00000019643	-	100	96.500	Astatotilapia_calliptera
ENSSDUG00000006307	-	100	94.000	ENSCVAG00000022649	-	100	94.000	Cyprinodon_variegatus
ENSSDUG00000006307	-	86	75.155	ENSDARG00000103934	megf8	99	73.837	Danio_rerio
ENSSDUG00000006307	-	100	92.500	ENSGAFG00000014787	-	100	92.500	Gambusia_affinis
ENSSDUG00000006307	-	100	96.500	ENSHBUG00000003728	-	100	96.500	Haplochromis_burtoni
ENSSDUG00000006307	-	100	96.500	ENSMZEG00005015817	-	100	96.500	Maylandia_zebra
ENSSDUG00000006307	-	100	96.000	ENSMMOG00000003924	-	100	96.000	Mola_mola
ENSSDUG00000006307	-	100	96.000	ENSMALG00000020807	-	100	96.000	Monopterus_albus
ENSSDUG00000006307	-	57	90.741	ENSOPRG00000014416	-	100	90.741	Ochotona_princeps
ENSSDUG00000006307	-	100	92.500	ENSORLG00000025395	-	100	92.500	Oryzias_latipes
ENSSDUG00000006307	-	100	92.500	ENSORLG00020009535	-	100	92.500	Oryzias_latipes_hni
ENSSDUG00000006307	-	100	93.000	ENSORLG00015015518	-	100	93.000	Oryzias_latipes_hsok
ENSSDUG00000006307	-	100	89.552	ENSPKIG00000014528	-	100	89.552	Paramormyrops_kingsleyae
ENSSDUG00000006307	-	100	94.000	ENSPFOG00000014418	-	100	94.000	Poecilia_formosa
ENSSDUG00000006307	-	100	94.000	ENSPLAG00000003181	-	100	94.000	Poecilia_latipinna
ENSSDUG00000006307	-	100	94.000	ENSPMEG00000022988	-	100	94.000	Poecilia_mexicana
ENSSDUG00000006307	-	100	94.000	ENSPMEG00000008020	-	100	94.000	Poecilia_mexicana
ENSSDUG00000006307	-	100	95.500	ENSPNYG00000004681	-	100	95.500	Pundamilia_nyererei
ENSSDUG00000006307	-	100	92.500	ENSSFOG00015021754	rab13	100	92.500	Scleropages_formosus
ENSSDUG00000006307	-	100	97.500	ENSSMAG00000016376	-	100	97.500	Scophthalmus_maximus
ENSSDUG00000006307	-	100	67.150	ENSSMAG00000002569	-	100	67.150	Scophthalmus_maximus
ENSSDUG00000006307	-	100	100.000	ENSSLDG00000015823	-	100	100.000	Seriola_lalandi_dorsalis
ENSSDUG00000006307	-	100	99.000	ENSSPAG00000022440	-	100	99.000	Stegastes_partitus
ENSSDUG00000006307	-	100	95.500	ENSTNIG00000018319	-	100	95.500	Tetraodon_nigroviridis
ENSSDUG00000006307	-	100	93.000	ENSXMAG00000016094	-	100	93.000	Xiphophorus_maculatus