EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000006349 (Gene tree)
Gene ID: 111238942
Gene Symbol: rcl1
Alias: zgc:109921
Full Name: RNA terminal phosphate cyclase like 1
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 11096 bases
Position: chrBDQW01001815.1:83297-94392
Accession: 111238942
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000008652	RTC	PF01137.21	3e-57	1	1
ENSSDUP00000008652	RTC_insert	PF05189.13	4.9e-36	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000008819	-	2162	XM_022768674	ENSSDUP00000008652	372 (aa)	XP_022624395	UPI000BBF1215

Gene Model

Click here to download ENSSDUG00000006349's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000006349's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000006349	rcl1	100	78.075	ENSG00000120158	RCL1	100	80.556	Homo_sapiens
ENSSDUG00000006349	rcl1	100	92.473	ENSAPOG00000015666	rcl1	100	92.473	Acanthochromis_polyacanthus
ENSSDUG00000006349	rcl1	100	79.144	ENSAMEG00000002631	RCL1	100	79.144	Ailuropoda_melanoleuca
ENSSDUG00000006349	rcl1	100	91.667	ENSACIG00000021195	rcl1	100	91.667	Amphilophus_citrinellus
ENSSDUG00000006349	rcl1	100	92.204	ENSAOCG00000002223	rcl1	100	92.204	Amphiprion_ocellaris
ENSSDUG00000006349	rcl1	100	92.742	ENSAPEG00000006905	rcl1	100	92.742	Amphiprion_percula
ENSSDUG00000006349	rcl1	100	91.398	ENSATEG00000020026	rcl1	100	91.398	Anabas_testudineus
ENSSDUG00000006349	rcl1	88	76.292	ENSAPLG00000006031	RCL1	100	76.292	Anas_platyrhynchos
ENSSDUG00000006349	rcl1	100	73.797	ENSACAG00000003640	RCL1	100	73.797	Anolis_carolinensis
ENSSDUG00000006349	rcl1	100	77.540	ENSANAG00000037372	RCL1	100	77.540	Aotus_nancymaae
ENSSDUG00000006349	rcl1	100	91.398	ENSACLG00000021724	rcl1	100	91.398	Astatotilapia_calliptera
ENSSDUG00000006349	rcl1	99	82.065	ENSAMXG00000033394	rcl1	99	82.065	Astyanax_mexicanus
ENSSDUG00000006349	rcl1	99	45.503	WBGene00022852	ZK1127.5	99	45.503	Caenorhabditis_elegans
ENSSDUG00000006349	rcl1	100	77.807	ENSCJAG00000011202	RCL1	100	77.807	Callithrix_jacchus
ENSSDUG00000006349	rcl1	100	79.144	ENSCAFG00000002091	RCL1	100	79.144	Canis_familiaris
ENSSDUG00000006349	rcl1	100	79.412	ENSCAFG00020000638	RCL1	78	79.412	Canis_lupus_dingo
ENSSDUG00000006349	rcl1	100	77.807	ENSCHIG00000012407	RCL1	100	77.807	Capra_hircus
ENSSDUG00000006349	rcl1	88	80.793	ENSTSYG00000009592	RCL1	97	81.319	Carlito_syrichta
ENSSDUG00000006349	rcl1	66	69.136	ENSCAPG00000013575	RCL1	100	69.136	Cavia_aperea
ENSSDUG00000006349	rcl1	100	78.075	ENSCPOG00000015354	RCL1	100	78.075	Cavia_porcellus
ENSSDUG00000006349	rcl1	100	77.807	ENSCCAG00000033505	RCL1	100	77.807	Cebus_capucinus
ENSSDUG00000006349	rcl1	100	77.807	ENSCATG00000034721	RCL1	100	77.807	Cercocebus_atys
ENSSDUG00000006349	rcl1	100	78.610	ENSCLAG00000007445	RCL1	100	78.610	Chinchilla_lanigera
ENSSDUG00000006349	rcl1	100	78.075	ENSCSAG00000008811	RCL1	100	78.075	Chlorocebus_sabaeus
ENSSDUG00000006349	rcl1	86	68.421	ENSCHOG00000007216	RCL1	100	68.421	Choloepus_hoffmanni
ENSSDUG00000006349	rcl1	100	76.203	ENSCPBG00000025481	RCL1	94	77.273	Chrysemys_picta_bellii
ENSSDUG00000006349	rcl1	100	58.667	ENSCING00000019565	-	99	58.667	Ciona_intestinalis
ENSSDUG00000006349	rcl1	100	78.075	ENSCANG00000027099	RCL1	100	78.075	Colobus_angolensis_palliatus
ENSSDUG00000006349	rcl1	100	78.342	ENSCGRG00001013748	Rcl1	100	78.342	Cricetulus_griseus_chok1gshd
ENSSDUG00000006349	rcl1	88	80.243	ENSCGRG00000005843	Rcl1	99	80.243	Cricetulus_griseus_crigri
ENSSDUG00000006349	rcl1	100	89.247	ENSCSEG00000000712	rcl1	98	89.247	Cynoglossus_semilaevis
ENSSDUG00000006349	rcl1	100	92.204	ENSCVAG00000011536	rcl1	100	92.204	Cyprinodon_variegatus
ENSSDUG00000006349	rcl1	99	79.019	ENSDARG00000038312	rcl1	100	79.019	Danio_rerio
ENSSDUG00000006349	rcl1	72	79.699	ENSDNOG00000019911	RCL1	100	81.019	Dasypus_novemcinctus
ENSSDUG00000006349	rcl1	99	79.189	ENSDORG00000015645	Rcl1	99	79.189	Dipodomys_ordii
ENSSDUG00000006349	rcl1	98	53.639	FBgn0020909	Rtc1	98	53.968	Drosophila_melanogaster
ENSSDUG00000006349	rcl1	88	55.183	ENSETEG00000014087	-	100	55.183	Echinops_telfairi
ENSSDUG00000006349	rcl1	100	55.228	ENSEBUG00000016621	-	99	55.228	Eptatretus_burgeri
ENSSDUG00000006349	rcl1	100	77.273	ENSEASG00005010653	RCL1	100	77.273	Equus_asinus_asinus
ENSSDUG00000006349	rcl1	100	77.273	ENSECAG00000015973	RCL1	100	77.273	Equus_caballus
ENSSDUG00000006349	rcl1	99	66.216	ENSEEUG00000009801	RCL1	99	66.216	Erinaceus_europaeus
ENSSDUG00000006349	rcl1	100	80.645	ENSELUG00000007353	rcl1	100	80.645	Esox_lucius
ENSSDUG00000006349	rcl1	99	78.108	ENSFCAG00000014557	RCL1	99	78.108	Felis_catus
ENSSDUG00000006349	rcl1	99	70.000	ENSFALG00000010553	RCL1	96	70.000	Ficedula_albicollis
ENSSDUG00000006349	rcl1	88	78.659	ENSFDAG00000004209	RCL1	100	78.659	Fukomys_damarensis
ENSSDUG00000006349	rcl1	100	91.398	ENSFHEG00000011228	rcl1	100	91.398	Fundulus_heteroclitus
ENSSDUG00000006349	rcl1	99	82.656	ENSGMOG00000004677	rcl1	99	82.656	Gadus_morhua
ENSSDUG00000006349	rcl1	99	75.135	ENSGALG00000015024	RCL1	99	75.135	Gallus_gallus
ENSSDUG00000006349	rcl1	100	91.667	ENSGAFG00000007257	rcl1	100	91.667	Gambusia_affinis
ENSSDUG00000006349	rcl1	100	90.323	ENSGACG00000017474	rcl1	100	90.323	Gasterosteus_aculeatus
ENSSDUG00000006349	rcl1	100	75.936	ENSGAGG00000003689	RCL1	100	75.936	Gopherus_agassizii
ENSSDUG00000006349	rcl1	100	77.540	ENSGGOG00000015041	RCL1	100	77.540	Gorilla_gorilla
ENSSDUG00000006349	rcl1	100	91.398	ENSHBUG00000001393	rcl1	100	91.398	Haplochromis_burtoni
ENSSDUG00000006349	rcl1	100	78.075	ENSHGLG00000016452	RCL1	100	78.075	Heterocephalus_glaber_female
ENSSDUG00000006349	rcl1	100	65.241	ENSHGLG00000005368	-	100	65.241	Heterocephalus_glaber_female
ENSSDUG00000006349	rcl1	100	66.043	ENSHGLG00100018010	-	100	66.043	Heterocephalus_glaber_male
ENSSDUG00000006349	rcl1	100	73.529	ENSHGLG00100008718	-	100	73.529	Heterocephalus_glaber_male
ENSSDUG00000006349	rcl1	100	91.398	ENSHCOG00000020170	rcl1	100	91.398	Hippocampus_comes
ENSSDUG00000006349	rcl1	100	83.065	ENSIPUG00000018054	RCL1	100	83.065	Ictalurus_punctatus
ENSSDUG00000006349	rcl1	100	77.273	ENSSTOG00000000023	RCL1	100	77.273	Ictidomys_tridecemlineatus
ENSSDUG00000006349	rcl1	99	78.919	ENSJJAG00000022803	-	99	78.919	Jaculus_jaculus
ENSSDUG00000006349	rcl1	54	62.376	ENSJJAG00000000764	-	98	62.376	Jaculus_jaculus
ENSSDUG00000006349	rcl1	99	68.649	ENSJJAG00000015632	-	99	68.649	Jaculus_jaculus
ENSSDUG00000006349	rcl1	100	92.742	ENSKMAG00000011946	rcl1	100	92.742	Kryptolebias_marmoratus
ENSSDUG00000006349	rcl1	100	87.097	ENSLBEG00000003957	rcl1	100	87.097	Labrus_bergylta
ENSSDUG00000006349	rcl1	93	75.434	ENSLACG00000004594	RCL1	100	79.814	Latimeria_chalumnae
ENSSDUG00000006349	rcl1	100	82.527	ENSLOCG00000010148	rcl1	98	82.527	Lepisosteus_oculatus
ENSSDUG00000006349	rcl1	99	77.297	ENSLAFG00000017495	RCL1	99	77.297	Loxodonta_africana
ENSSDUG00000006349	rcl1	100	78.075	ENSMFAG00000037906	RCL1	100	78.075	Macaca_fascicularis
ENSSDUG00000006349	rcl1	100	78.075	ENSMNEG00000012288	RCL1	100	78.075	Macaca_nemestrina
ENSSDUG00000006349	rcl1	100	78.075	ENSMLEG00000043088	RCL1	100	78.075	Mandrillus_leucophaeus
ENSSDUG00000006349	rcl1	100	93.011	ENSMAMG00000008311	rcl1	100	93.011	Mastacembelus_armatus
ENSSDUG00000006349	rcl1	100	91.398	ENSMZEG00005017292	rcl1	100	91.398	Maylandia_zebra
ENSSDUG00000006349	rcl1	58	73.636	ENSMGAG00000002245	RCL1	100	73.636	Meleagris_gallopavo
ENSSDUG00000006349	rcl1	58	80.556	ENSMAUG00000008922	Rcl1	100	80.556	Mesocricetus_auratus
ENSSDUG00000006349	rcl1	100	78.342	ENSMICG00000015562	RCL1	100	78.342	Microcebus_murinus
ENSSDUG00000006349	rcl1	100	78.075	ENSMOCG00000012145	Rcl1	100	78.075	Microtus_ochrogaster
ENSSDUG00000006349	rcl1	100	87.936	ENSMMOG00000021264	rcl1	100	87.936	Mola_mola
ENSSDUG00000006349	rcl1	95	77.528	ENSMODG00000015377	RCL1	94	77.528	Monodelphis_domestica
ENSSDUG00000006349	rcl1	100	92.473	ENSMALG00000018618	rcl1	100	92.473	Monopterus_albus
ENSSDUG00000006349	rcl1	100	78.075	MGP_CAROLIEiJ_G0022853	Rcl1	100	78.075	Mus_caroli
ENSSDUG00000006349	rcl1	100	77.540	ENSMUSG00000024785	Rcl1	100	77.540	Mus_musculus
ENSSDUG00000006349	rcl1	100	78.342	MGP_PahariEiJ_G0014346	Rcl1	100	79.532	Mus_pahari
ENSSDUG00000006349	rcl1	100	77.540	MGP_SPRETEiJ_G0023771	Rcl1	100	78.947	Mus_spretus
ENSSDUG00000006349	rcl1	100	78.877	ENSMPUG00000004998	RCL1	100	78.877	Mustela_putorius_furo
ENSSDUG00000006349	rcl1	100	76.738	ENSMLUG00000009654	RCL1	100	76.738	Myotis_lucifugus
ENSSDUG00000006349	rcl1	100	78.075	ENSNGAG00000015327	Rcl1	100	78.075	Nannospalax_galili
ENSSDUG00000006349	rcl1	92	88.921	ENSNBRG00000019854	rcl1	99	85.124	Neolamprologus_brichardi
ENSSDUG00000006349	rcl1	100	75.401	ENSNLEG00000008891	RCL1	100	75.401	Nomascus_leucogenys
ENSSDUG00000006349	rcl1	100	71.390	ENSMEUG00000007653	RCL1	100	71.390	Notamacropus_eugenii
ENSSDUG00000006349	rcl1	100	76.203	ENSOPRG00000010965	RCL1	100	76.203	Ochotona_princeps
ENSSDUG00000006349	rcl1	88	66.869	ENSODEG00000004151	RCL1	96	66.869	Octodon_degus
ENSSDUG00000006349	rcl1	100	91.935	ENSONIG00000003871	rcl1	100	91.935	Oreochromis_niloticus
ENSSDUG00000006349	rcl1	67	76.285	ENSOANG00000013193	-	99	76.285	Ornithorhynchus_anatinus
ENSSDUG00000006349	rcl1	100	77.540	ENSOCUG00000008161	RCL1	100	77.540	Oryctolagus_cuniculus
ENSSDUG00000006349	rcl1	100	88.441	ENSORLG00000010443	rcl1	100	88.441	Oryzias_latipes
ENSSDUG00000006349	rcl1	100	88.710	ENSORLG00020012211	rcl1	100	88.710	Oryzias_latipes_hni
ENSSDUG00000006349	rcl1	100	88.172	ENSORLG00015001122	rcl1	100	88.172	Oryzias_latipes_hsok
ENSSDUG00000006349	rcl1	100	91.129	ENSOMEG00000022976	rcl1	88	91.129	Oryzias_melastigma
ENSSDUG00000006349	rcl1	99	78.108	ENSOGAG00000007480	RCL1	99	78.108	Otolemur_garnettii
ENSSDUG00000006349	rcl1	100	77.807	ENSOARG00000013463	RCL1	100	77.807	Ovis_aries
ENSSDUG00000006349	rcl1	100	77.807	ENSPPAG00000037958	RCL1	100	77.807	Pan_paniscus
ENSSDUG00000006349	rcl1	99	77.568	ENSPPRG00000022645	RCL1	99	77.568	Panthera_pardus
ENSSDUG00000006349	rcl1	88	79.511	ENSPTIG00000019031	RCL1	100	79.630	Panthera_tigris_altaica
ENSSDUG00000006349	rcl1	100	77.540	ENSPTRG00000020743	RCL1	100	77.540	Pan_troglodytes
ENSSDUG00000006349	rcl1	100	78.075	ENSPANG00000025151	RCL1	100	78.075	Papio_anubis
ENSSDUG00000006349	rcl1	100	81.183	ENSPKIG00000021022	rcl1	100	81.183	Paramormyrops_kingsleyae
ENSSDUG00000006349	rcl1	88	77.508	ENSPSIG00000012302	RCL1	100	77.508	Pelodiscus_sinensis
ENSSDUG00000006349	rcl1	100	89.247	ENSPMGG00000024007	rcl1	100	89.247	Periophthalmus_magnuspinnatus
ENSSDUG00000006349	rcl1	100	78.342	ENSPEMG00000023275	Rcl1	100	78.342	Peromyscus_maniculatus_bairdii
ENSSDUG00000006349	rcl1	100	77.540	ENSPCIG00000000188	RCL1	100	77.540	Phascolarctos_cinereus
ENSSDUG00000006349	rcl1	100	91.667	ENSPFOG00000019682	rcl1	99	91.667	Poecilia_formosa
ENSSDUG00000006349	rcl1	100	91.667	ENSPLAG00000022354	rcl1	100	91.667	Poecilia_latipinna
ENSSDUG00000006349	rcl1	100	91.667	ENSPMEG00000008131	rcl1	100	91.667	Poecilia_mexicana
ENSSDUG00000006349	rcl1	100	91.129	ENSPREG00000008032	rcl1	100	91.129	Poecilia_reticulata
ENSSDUG00000006349	rcl1	100	78.342	ENSPPYG00000019244	RCL1	100	78.342	Pongo_abelii
ENSSDUG00000006349	rcl1	99	72.432	ENSPCAG00000001440	RCL1	99	72.432	Procavia_capensis
ENSSDUG00000006349	rcl1	100	78.610	ENSPCOG00000009611	RCL1	100	78.610	Propithecus_coquereli
ENSSDUG00000006349	rcl1	100	77.540	ENSPVAG00000015752	RCL1	100	77.540	Pteropus_vampyrus
ENSSDUG00000006349	rcl1	100	91.398	ENSPNYG00000012910	rcl1	100	91.398	Pundamilia_nyererei
ENSSDUG00000006349	rcl1	99	82.337	ENSPNAG00000028307	rcl1	91	82.337	Pygocentrus_nattereri
ENSSDUG00000006349	rcl1	100	77.540	ENSRNOG00000015491	Rcl1	100	77.540	Rattus_norvegicus
ENSSDUG00000006349	rcl1	100	77.807	ENSRBIG00000035818	RCL1	100	77.807	Rhinopithecus_bieti
ENSSDUG00000006349	rcl1	100	78.075	ENSRROG00000029781	RCL1	100	78.075	Rhinopithecus_roxellana
ENSSDUG00000006349	rcl1	99	37.701	YOL010W	-	99	37.701	Saccharomyces_cerevisiae
ENSSDUG00000006349	rcl1	100	78.075	ENSSBOG00000026369	RCL1	100	78.075	Saimiri_boliviensis_boliviensis
ENSSDUG00000006349	rcl1	89	78.248	ENSSHAG00000014086	RCL1	100	78.248	Sarcophilus_harrisii
ENSSDUG00000006349	rcl1	100	81.720	ENSSFOG00015023020	rcl1	100	81.720	Scleropages_formosus
ENSSDUG00000006349	rcl1	100	94.624	ENSSMAG00000019751	rcl1	86	94.624	Scophthalmus_maximus
ENSSDUG00000006349	rcl1	100	99.194	ENSSLDG00000022076	rcl1	100	99.194	Seriola_lalandi_dorsalis
ENSSDUG00000006349	rcl1	100	78.075	ENSSARG00000009260	RCL1	100	78.075	Sorex_araneus
ENSSDUG00000006349	rcl1	99	76.486	ENSSPUG00000016330	RCL1	99	76.486	Sphenodon_punctatus
ENSSDUG00000006349	rcl1	100	93.280	ENSSPAG00000018038	rcl1	100	93.280	Stegastes_partitus
ENSSDUG00000006349	rcl1	100	78.075	ENSSSCG00000005217	RCL1	83	78.075	Sus_scrofa
ENSSDUG00000006349	rcl1	99	74.731	ENSTGUG00000005138	RCL1	99	74.731	Taeniopygia_guttata
ENSSDUG00000006349	rcl1	100	88.172	ENSTRUG00000010493	rcl1	100	88.172	Takifugu_rubripes
ENSSDUG00000006349	rcl1	100	86.022	ENSTNIG00000013214	rcl1	99	86.022	Tetraodon_nigroviridis
ENSSDUG00000006349	rcl1	100	73.529	ENSTBEG00000016339	RCL1	100	73.529	Tupaia_belangeri
ENSSDUG00000006349	rcl1	100	78.075	ENSTTRG00000016525	RCL1	100	78.075	Tursiops_truncatus
ENSSDUG00000006349	rcl1	100	79.144	ENSUAMG00000005598	RCL1	100	80.247	Ursus_americanus
ENSSDUG00000006349	rcl1	88	80.488	ENSUMAG00000017890	RCL1	97	80.488	Ursus_maritimus
ENSSDUG00000006349	rcl1	88	79.878	ENSVPAG00000009188	RCL1	100	79.878	Vicugna_pacos
ENSSDUG00000006349	rcl1	88	81.459	ENSVVUG00000007304	RCL1	89	81.459	Vulpes_vulpes
ENSSDUG00000006349	rcl1	100	72.267	ENSXETG00000000592	rcl1	100	72.267	Xenopus_tropicalis
ENSSDUG00000006349	rcl1	100	91.935	ENSXCOG00000004922	rcl1	100	91.935	Xiphophorus_couchianus
ENSSDUG00000006349	rcl1	100	91.935	ENSXMAG00000022366	RCL1	100	91.935	Xiphophorus_maculatus