EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000006433 (Gene tree)
Gene ID: 111219757
Gene Symbol: -
Alias: -
Full Name: RNA-binding protein with serine-rich domain 1-like
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 4460 bases
Position: chrBDQW01000068.1:14709374-14713833
Accession: 111219757
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000008778	RRM_1	PF00076.22	3.7e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000008949	-	903	XM_022742523	ENSSDUP00000008778	300 (aa)	XP_022598244	-

Gene Model

Click here to download ENSSDUG00000006433's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03013	RNA transport	KEGG
sdu03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000006433's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000006433	-	85	67.939	ENSG00000205937	RNPS1	91	67.176	Homo_sapiens
ENSSDUG00000006433	-	76	77.489	ENSAPOG00000017310	RNPS1	74	65.368	Acanthochromis_polyacanthus
ENSSDUG00000006433	-	91	97.810	ENSAPOG00000014649	-	99	97.810	Acanthochromis_polyacanthus
ENSSDUG00000006433	-	69	68.095	ENSACIG00000014367	-	76	78.571	Amphilophus_citrinellus
ENSSDUG00000006433	-	92	97.826	ENSAPEG00000019263	-	95	97.826	Amphiprion_percula
ENSSDUG00000006433	-	85	67.557	ENSANAG00000028802	RNPS1	52	84.404	Aotus_nancymaae
ENSSDUG00000006433	-	77	66.807	ENSBTAG00000009969	RNPS1	78	65.833	Bos_taurus
ENSSDUG00000006433	-	85	67.939	ENSCJAG00000014969	RNPS1	98	62.869	Callithrix_jacchus
ENSSDUG00000006433	-	85	67.939	ENSCAFG00020026159	RNPS1	95	64.286	Canis_lupus_dingo
ENSSDUG00000006433	-	65	66.176	ENSCHIG00000014621	-	69	65.854	Capra_hircus
ENSSDUG00000006433	-	75	64.957	ENSTSYG00000031848	-	95	63.675	Carlito_syrichta
ENSSDUG00000006433	-	85	67.939	ENSTSYG00000001629	RNPS1	52	84.404	Carlito_syrichta
ENSSDUG00000006433	-	85	67.557	ENSCCAG00000034480	RNPS1	78	65.842	Cebus_capucinus
ENSSDUG00000006433	-	94	60.825	ENSCATG00000042361	-	53	80.734	Cercocebus_atys
ENSSDUG00000006433	-	85	67.939	ENSCATG00000013756	RNPS1	97	62.500	Cercocebus_atys
ENSSDUG00000006433	-	85	67.939	ENSCLAG00000015546	RNPS1	85	67.176	Chinchilla_lanigera
ENSSDUG00000006433	-	88	70.696	ENSCSAG00000005219	-	80	67.917	Chlorocebus_sabaeus
ENSSDUG00000006433	-	85	67.939	ENSCANG00000041307	RNPS1	79	66.502	Colobus_angolensis_palliatus
ENSSDUG00000006433	-	77	66.667	ENSCGRG00000014021	Rnps1	78	65.833	Cricetulus_griseus_crigri
ENSSDUG00000006433	-	84	93.281	ENSCSEG00000000402	RNPS1	84	93.281	Cynoglossus_semilaevis
ENSSDUG00000006433	-	75	59.322	ENSECAG00000023288	RNPS1	83	62.821	Equus_caballus
ENSSDUG00000006433	-	85	68.321	ENSFCAG00000007690	RNPS1	52	84.404	Felis_catus
ENSSDUG00000006433	-	85	67.939	ENSGGOG00000014275	RNPS1	95	64.317	Gorilla_gorilla
ENSSDUG00000006433	-	66	67.150	ENSGGOG00000026421	-	79	66.184	Gorilla_gorilla
ENSSDUG00000006433	-	78	65.145	ENSHGLG00000006292	-	91	64.069	Heterocephalus_glaber_female
ENSSDUG00000006433	-	70	97.156	ENSLBEG00000015904	-	100	97.156	Labrus_bergylta
ENSSDUG00000006433	-	85	67.939	ENSMFAG00000042142	RNPS1	79	66.502	Macaca_fascicularis
ENSSDUG00000006433	-	81	62.000	ENSMFAG00000044121	-	82	57.692	Macaca_fascicularis
ENSSDUG00000006433	-	65	67.488	ENSMMUG00000019238	-	79	66.502	Macaca_mulatta
ENSSDUG00000006433	-	85	67.939	ENSMLEG00000036928	RNPS1	79	66.502	Mandrillus_leucophaeus
ENSSDUG00000006433	-	93	96.403	ENSMAMG00000021148	-	92	96.403	Mastacembelus_armatus
ENSSDUG00000006433	-	77	65.000	ENSMGAG00000010042	RNPS1	98	64.017	Meleagris_gallopavo
ENSSDUG00000006433	-	85	67.557	ENSMICG00000031543	RNPS1	52	84.404	Microcebus_murinus
ENSSDUG00000006433	-	88	66.790	ENSNLEG00000009243	RNPS1	87	67.431	Nomascus_leucogenys
ENSSDUG00000006433	-	76	91.266	ENSORLG00015011183	RNPS1	73	91.266	Oryzias_latipes_hsok
ENSSDUG00000006433	-	85	67.176	ENSOARG00000018056	-	72	67.176	Ovis_aries
ENSSDUG00000006433	-	73	64.758	ENSPPAG00000037836	-	95	63.877	Pan_paniscus
ENSSDUG00000006433	-	85	68.321	ENSPPRG00000011255	RNPS1	52	84.404	Panthera_pardus
ENSSDUG00000006433	-	50	70.861	ENSPTIG00000015643	RNPS1	57	84.404	Panthera_tigris_altaica
ENSSDUG00000006433	-	85	67.557	ENSPTRG00000031310	RNPS1	52	84.404	Pan_troglodytes
ENSSDUG00000006433	-	85	67.939	ENSPANG00000015748	RNPS1	79	66.502	Papio_anubis
ENSSDUG00000006433	-	85	66.412	ENSPSIG00000006048	RNPS1	84	65.900	Pelodiscus_sinensis
ENSSDUG00000006433	-	50	72.185	ENSPCIG00000016114	-	53	82.569	Phascolarctos_cinereus
ENSSDUG00000006433	-	85	67.557	ENSPCOG00000005478	RNPS1	52	84.404	Propithecus_coquereli
ENSSDUG00000006433	-	82	67.442	ENSRBIG00000038965	-	94	66.667	Rhinopithecus_bieti
ENSSDUG00000006433	-	85	67.939	ENSRROG00000041252	RNPS1	85	69.167	Rhinopithecus_roxellana
ENSSDUG00000006433	-	85	67.939	ENSSBOG00000027927	RNPS1	78	66.337	Saimiri_boliviensis_boliviensis
ENSSDUG00000006433	-	76	77.682	ENSSFOG00015019341	-	74	77.350	Scleropages_formosus
ENSSDUG00000006433	-	76	71.179	ENSSMAG00000016933	RNPS1	82	69.163	Scophthalmus_maximus
ENSSDUG00000006433	-	56	96.407	ENSSMAG00000005367	-	97	96.407	Scophthalmus_maximus
ENSSDUG00000006433	-	74	78.571	ENSSLDG00000021341	RNPS1	81	66.071	Seriola_lalandi_dorsalis
ENSSDUG00000006433	-	86	98.054	ENSSPAG00000005411	-	99	98.054	Stegastes_partitus
ENSSDUG00000006433	-	88	68.635	ENSTBEG00000009098	RNPS1	95	67.176	Tupaia_belangeri
ENSSDUG00000006433	-	85	67.939	ENSUAMG00000004462	RNPS1	95	67.176	Ursus_americanus