EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000006600 (Gene tree)
Gene ID: 111228253
Gene Symbol: rnpc3
Alias: caliban|clbn|zgc:136847
Full Name: RNA binding region (RNP1%2C RRM) containing 3
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 17824 bases
Position: chrBDQW01000216.1:4882119-4899942
Accession: 111228253
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000008965	RRM_1	PF00076.22	1.6e-16	1	2
ENSSDUP00000008965	RRM_1	PF00076.22	1.6e-16	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000009141	-	1997	XM_022754098	ENSSDUP00000008965	513 (aa)	XP_022609819	UPI000BBE9A35

Gene Model

Click here to download ENSSDUG00000006600's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000006600's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000006600	rnpc3	96	54.781	ENSG00000185946	RNPC3	96	56.391	Homo_sapiens
ENSSDUG00000006600	rnpc3	100	85.770	ENSAPOG00000017371	rnpc3	100	85.770	Acanthochromis_polyacanthus
ENSSDUG00000006600	rnpc3	96	54.653	ENSAMEG00000001694	RNPC3	94	54.871	Ailuropoda_melanoleuca
ENSSDUG00000006600	rnpc3	99	79.804	ENSACIG00000021043	rnpc3	99	79.804	Amphilophus_citrinellus
ENSSDUG00000006600	rnpc3	100	86.745	ENSAOCG00000014052	rnpc3	98	86.745	Amphiprion_ocellaris
ENSSDUG00000006600	rnpc3	100	86.550	ENSAPEG00000008739	rnpc3	98	86.550	Amphiprion_percula
ENSSDUG00000006600	rnpc3	100	85.465	ENSATEG00000021263	rnpc3	100	85.465	Anabas_testudineus
ENSSDUG00000006600	rnpc3	89	55.531	ENSAPLG00000015605	RNPC3	99	55.531	Anas_platyrhynchos
ENSSDUG00000006600	rnpc3	96	55.263	ENSACAG00000002029	RNPC3	96	53.571	Anolis_carolinensis
ENSSDUG00000006600	rnpc3	96	54.257	ENSANAG00000019950	RNPC3	95	54.257	Aotus_nancymaae
ENSSDUG00000006600	rnpc3	99	83.922	ENSACLG00000014702	rnpc3	99	83.922	Astatotilapia_calliptera
ENSSDUG00000006600	rnpc3	99	67.054	ENSAMXG00000033372	rnpc3	99	67.054	Astyanax_mexicanus
ENSSDUG00000006600	rnpc3	96	55.179	ENSBTAG00000019091	RNPC3	95	55.179	Bos_taurus
ENSSDUG00000006600	rnpc3	96	54.491	ENSCJAG00000035686	RNPC3	94	54.491	Callithrix_jacchus
ENSSDUG00000006600	rnpc3	96	54.871	ENSCAFG00000019972	RNPC3	94	54.871	Canis_familiaris
ENSSDUG00000006600	rnpc3	96	54.871	ENSCAFG00020011300	RNPC3	94	54.871	Canis_lupus_dingo
ENSSDUG00000006600	rnpc3	96	55.378	ENSCHIG00000020361	RNPC3	95	54.890	Capra_hircus
ENSSDUG00000006600	rnpc3	96	54.400	ENSTSYG00000030256	RNPC3	95	54.400	Carlito_syrichta
ENSSDUG00000006600	rnpc3	86	46.205	ENSCAPG00000013600	RNPC3	97	45.946	Cavia_aperea
ENSSDUG00000006600	rnpc3	96	54.382	ENSCPOG00000031638	RNPC3	95	54.382	Cavia_porcellus
ENSSDUG00000006600	rnpc3	96	54.274	ENSCCAG00000024301	RNPC3	95	54.274	Cebus_capucinus
ENSSDUG00000006600	rnpc3	96	54.672	ENSCATG00000002086	RNPC3	94	54.672	Cercocebus_atys
ENSSDUG00000006600	rnpc3	96	41.800	ENSCATG00000035930	-	52	48.000	Cercocebus_atys
ENSSDUG00000006600	rnpc3	96	52.519	ENSCLAG00000005169	RNPC3	95	53.785	Chinchilla_lanigera
ENSSDUG00000006600	rnpc3	96	54.672	ENSCSAG00000001519	RNPC3	94	54.672	Chlorocebus_sabaeus
ENSSDUG00000006600	rnpc3	97	56.548	ENSCPBG00000028311	RNPC3	95	56.634	Chrysemys_picta_bellii
ENSSDUG00000006600	rnpc3	95	34.827	ENSCSAVG00000002800	-	76	53.077	Ciona_savignyi
ENSSDUG00000006600	rnpc3	96	55.050	ENSCANG00000031444	RNPC3	94	54.871	Colobus_angolensis_palliatus
ENSSDUG00000006600	rnpc3	97	54.092	ENSCGRG00001019276	Rnpc3	95	54.309	Cricetulus_griseus_chok1gshd
ENSSDUG00000006600	rnpc3	89	52.495	ENSCGRG00000000053	Rnpc3	99	52.495	Cricetulus_griseus_crigri
ENSSDUG00000006600	rnpc3	99	79.102	ENSCSEG00000013475	rnpc3	99	78.711	Cynoglossus_semilaevis
ENSSDUG00000006600	rnpc3	100	80.156	ENSCVAG00000002645	rnpc3	100	80.156	Cyprinodon_variegatus
ENSSDUG00000006600	rnpc3	99	66.732	ENSDARG00000011247	rnpc3	99	67.123	Danio_rerio
ENSSDUG00000006600	rnpc3	96	54.455	ENSDNOG00000047498	-	95	54.291	Dasypus_novemcinctus
ENSSDUG00000006600	rnpc3	96	54.059	ENSDNOG00000044555	-	95	53.892	Dasypus_novemcinctus
ENSSDUG00000006600	rnpc3	96	54.400	ENSDORG00000027343	Rnpc3	95	54.400	Dipodomys_ordii
ENSSDUG00000006600	rnpc3	99	50.380	ENSEBUG00000002068	rnpc3	99	50.476	Eptatretus_burgeri
ENSSDUG00000006600	rnpc3	96	55.689	ENSEASG00005015957	RNPC3	94	55.689	Equus_asinus_asinus
ENSSDUG00000006600	rnpc3	96	55.689	ENSECAG00000021148	RNPC3	94	55.689	Equus_caballus
ENSSDUG00000006600	rnpc3	99	69.866	ENSELUG00000002264	rnpc3	99	69.157	Esox_lucius
ENSSDUG00000006600	rnpc3	96	54.509	ENSFCAG00000024312	RNPC3	94	54.509	Felis_catus
ENSSDUG00000006600	rnpc3	89	55.940	ENSFALG00000002580	RNPC3	99	55.940	Ficedula_albicollis
ENSSDUG00000006600	rnpc3	96	54.563	ENSFDAG00000019948	RNPC3	95	54.563	Fukomys_damarensis
ENSSDUG00000006600	rnpc3	100	73.489	ENSFHEG00000020647	rnpc3	100	73.489	Fundulus_heteroclitus
ENSSDUG00000006600	rnpc3	100	69.052	ENSGMOG00000019213	rnpc3	99	68.798	Gadus_morhua
ENSSDUG00000006600	rnpc3	97	56.574	ENSGALG00000005162	RNPC3	88	56.687	Gallus_gallus
ENSSDUG00000006600	rnpc3	100	77.583	ENSGAFG00000017236	rnpc3	100	77.583	Gambusia_affinis
ENSSDUG00000006600	rnpc3	100	81.044	ENSGACG00000002048	rnpc3	99	81.853	Gasterosteus_aculeatus
ENSSDUG00000006600	rnpc3	97	57.199	ENSGAGG00000008438	RNPC3	94	57.087	Gopherus_agassizii
ENSSDUG00000006600	rnpc3	97	48.104	ENSGGOG00000026201	-	95	47.705	Gorilla_gorilla
ENSSDUG00000006600	rnpc3	82	85.417	ENSHBUG00000015966	rnpc3	85	85.417	Haplochromis_burtoni
ENSSDUG00000006600	rnpc3	96	54.150	ENSHGLG00000001708	RNPC3	95	53.968	Heterocephalus_glaber_female
ENSSDUG00000006600	rnpc3	96	54.150	ENSHGLG00100003005	RNPC3	95	53.968	Heterocephalus_glaber_male
ENSSDUG00000006600	rnpc3	99	74.609	ENSHCOG00000017135	rnpc3	100	74.609	Hippocampus_comes
ENSSDUG00000006600	rnpc3	99	65.497	ENSIPUG00000002916	rnpc3	99	65.887	Ictalurus_punctatus
ENSSDUG00000006600	rnpc3	96	53.892	ENSSTOG00000025020	RNPC3	95	53.892	Ictidomys_tridecemlineatus
ENSSDUG00000006600	rnpc3	96	54.491	ENSJJAG00000010203	Rnpc3	96	53.937	Jaculus_jaculus
ENSSDUG00000006600	rnpc3	99	79.216	ENSKMAG00000017358	rnpc3	99	78.824	Kryptolebias_marmoratus
ENSSDUG00000006600	rnpc3	100	81.128	ENSLBEG00000024901	rnpc3	98	81.128	Labrus_bergylta
ENSSDUG00000006600	rnpc3	99	58.560	ENSLACG00000005720	RNPC3	92	56.615	Latimeria_chalumnae
ENSSDUG00000006600	rnpc3	99	63.883	ENSLOCG00000007986	rnpc3	99	61.165	Lepisosteus_oculatus
ENSSDUG00000006600	rnpc3	96	54.960	ENSLAFG00000032342	RNPC3	95	54.960	Loxodonta_africana
ENSSDUG00000006600	rnpc3	96	54.672	ENSMFAG00000002004	RNPC3	94	54.672	Macaca_fascicularis
ENSSDUG00000006600	rnpc3	96	40.681	ENSMFAG00000002917	-	94	40.161	Macaca_fascicularis
ENSSDUG00000006600	rnpc3	96	54.473	ENSMMUG00000018039	RNPC3	94	54.473	Macaca_mulatta
ENSSDUG00000006600	rnpc3	79	49.550	ENSMMUG00000002098	-	85	49.550	Macaca_mulatta
ENSSDUG00000006600	rnpc3	96	51.292	ENSMNEG00000033950	RNPC3	94	51.292	Macaca_nemestrina
ENSSDUG00000006600	rnpc3	96	39.516	ENSMNEG00000029209	-	94	39.235	Macaca_nemestrina
ENSSDUG00000006600	rnpc3	96	54.672	ENSMLEG00000033628	RNPC3	94	54.672	Mandrillus_leucophaeus
ENSSDUG00000006600	rnpc3	96	41.365	ENSMLEG00000034644	-	95	40.864	Mandrillus_leucophaeus
ENSSDUG00000006600	rnpc3	100	76.413	ENSMAMG00000007496	rnpc3	100	76.413	Mastacembelus_armatus
ENSSDUG00000006600	rnpc3	99	83.658	ENSMZEG00005020233	rnpc3	99	83.658	Maylandia_zebra
ENSSDUG00000006600	rnpc3	89	56.197	ENSMGAG00000006381	RNPC3	99	56.867	Meleagris_gallopavo
ENSSDUG00000006600	rnpc3	96	54.839	ENSMAUG00000001358	Rnpc3	95	54.839	Mesocricetus_auratus
ENSSDUG00000006600	rnpc3	96	55.248	ENSMICG00000029591	RNPC3	95	55.248	Microcebus_murinus
ENSSDUG00000006600	rnpc3	96	54.509	ENSMOCG00000013423	Rnpc3	94	54.509	Microtus_ochrogaster
ENSSDUG00000006600	rnpc3	100	75.292	ENSMMOG00000005309	rnpc3	100	77.043	Mola_mola
ENSSDUG00000006600	rnpc3	97	54.672	ENSMODG00000002946	RNPC3	95	54.076	Monodelphis_domestica
ENSSDUG00000006600	rnpc3	99	81.018	ENSMALG00000015471	rnpc3	100	81.018	Monopterus_albus
ENSSDUG00000006600	rnpc3	96	54.509	MGP_CAROLIEiJ_G0025555	Rnpc3	96	54.509	Mus_caroli
ENSSDUG00000006600	rnpc3	96	54.527	ENSMUSG00000027981	Rnpc3	99	53.079	Mus_musculus
ENSSDUG00000006600	rnpc3	96	54.125	MGP_PahariEiJ_G0027001	Rnpc3	96	54.125	Mus_pahari
ENSSDUG00000006600	rnpc3	96	51.267	MGP_SPRETEiJ_G0026505	Rnpc3	96	54.326	Mus_spretus
ENSSDUG00000006600	rnpc3	96	55.090	ENSMPUG00000007349	RNPC3	94	54.617	Mustela_putorius_furo
ENSSDUG00000006600	rnpc3	96	55.110	ENSMLUG00000028743	RNPC3	94	55.110	Myotis_lucifugus
ENSSDUG00000006600	rnpc3	96	54.291	ENSNGAG00000010939	Rnpc3	95	54.291	Nannospalax_galili
ENSSDUG00000006600	rnpc3	99	84.314	ENSNBRG00000012196	rnpc3	96	84.314	Neolamprologus_brichardi
ENSSDUG00000006600	rnpc3	96	54.762	ENSNLEG00000012013	RNPC3	95	54.762	Nomascus_leucogenys
ENSSDUG00000006600	rnpc3	96	54.600	ENSODEG00000007612	RNPC3	95	54.582	Octodon_degus
ENSSDUG00000006600	rnpc3	99	84.902	ENSONIG00000004770	rnpc3	100	84.306	Oreochromis_niloticus
ENSSDUG00000006600	rnpc3	92	56.025	ENSOANG00000008220	RNPC3	99	56.933	Ornithorhynchus_anatinus
ENSSDUG00000006600	rnpc3	96	54.743	ENSOCUG00000004016	RNPC3	95	54.491	Oryctolagus_cuniculus
ENSSDUG00000006600	rnpc3	100	76.218	ENSORLG00000005694	rnpc3	100	76.218	Oryzias_latipes
ENSSDUG00000006600	rnpc3	100	77.388	ENSORLG00020005513	rnpc3	100	77.388	Oryzias_latipes_hni
ENSSDUG00000006600	rnpc3	100	76.803	ENSORLG00015002179	rnpc3	100	76.803	Oryzias_latipes_hsok
ENSSDUG00000006600	rnpc3	100	76.803	ENSOMEG00000017737	rnpc3	100	76.998	Oryzias_melastigma
ENSSDUG00000006600	rnpc3	96	55.467	ENSOGAG00000026182	RNPC3	95	55.467	Otolemur_garnettii
ENSSDUG00000006600	rnpc3	96	55.378	ENSOARG00000018719	RNPC3	95	54.890	Ovis_aries
ENSSDUG00000006600	rnpc3	97	48.810	ENSPPAG00000030278	-	97	49.008	Pan_paniscus
ENSSDUG00000006600	rnpc3	96	54.563	ENSPPAG00000037459	RNPC3	95	54.563	Pan_paniscus
ENSSDUG00000006600	rnpc3	96	54.582	ENSPPRG00000020246	RNPC3	94	54.509	Panthera_pardus
ENSSDUG00000006600	rnpc3	96	54.582	ENSPTIG00000009887	RNPC3	96	54.509	Panthera_tigris_altaica
ENSSDUG00000006600	rnpc3	96	54.473	ENSPTRG00000033902	RNPC3	95	54.473	Pan_troglodytes
ENSSDUG00000006600	rnpc3	97	48.303	ENSPTRG00000044227	-	97	48.303	Pan_troglodytes
ENSSDUG00000006600	rnpc3	96	44.048	ENSPANG00000029957	-	96	39.006	Papio_anubis
ENSSDUG00000006600	rnpc3	96	54.781	ENSPANG00000012137	RNPC3	94	54.781	Papio_anubis
ENSSDUG00000006600	rnpc3	99	66.342	ENSPKIG00000008828	rnpc3	99	64.202	Paramormyrops_kingsleyae
ENSSDUG00000006600	rnpc3	65	53.550	ENSPSIG00000007396	RNPC3	99	54.734	Pelodiscus_sinensis
ENSSDUG00000006600	rnpc3	99	65.302	ENSPMGG00000011742	rnpc3	100	65.302	Periophthalmus_magnuspinnatus
ENSSDUG00000006600	rnpc3	92	52.092	ENSPEMG00000020112	Rnpc3	99	53.348	Peromyscus_maniculatus_bairdii
ENSSDUG00000006600	rnpc3	95	41.760	ENSPMAG00000003778	rnpc3	95	43.353	Petromyzon_marinus
ENSSDUG00000006600	rnpc3	97	54.871	ENSPCIG00000004415	-	95	54.871	Phascolarctos_cinereus
ENSSDUG00000006600	rnpc3	99	78.431	ENSPFOG00000009895	rnpc3	99	78.431	Poecilia_formosa
ENSSDUG00000006600	rnpc3	99	78.824	ENSPLAG00000012023	rnpc3	99	78.824	Poecilia_latipinna
ENSSDUG00000006600	rnpc3	99	78.865	ENSPMEG00000003663	rnpc3	99	78.627	Poecilia_mexicana
ENSSDUG00000006600	rnpc3	100	77.388	ENSPREG00000010206	rnpc3	100	77.388	Poecilia_reticulata
ENSSDUG00000006600	rnpc3	81	50.711	ENSPPYG00000001102	RNPC3	93	50.711	Pongo_abelii
ENSSDUG00000006600	rnpc3	99	83.922	ENSPNYG00000020603	rnpc3	99	83.922	Pundamilia_nyererei
ENSSDUG00000006600	rnpc3	99	58.015	ENSPNAG00000000524	rnpc3	92	58.555	Pygocentrus_nattereri
ENSSDUG00000006600	rnpc3	96	54.309	ENSRNOG00000017310	Rnpc3	95	54.309	Rattus_norvegicus
ENSSDUG00000006600	rnpc3	96	51.786	ENSRBIG00000043897	RNPC3	94	51.786	Rhinopithecus_bieti
ENSSDUG00000006600	rnpc3	96	54.672	ENSRROG00000032334	RNPC3	94	54.672	Rhinopithecus_roxellana
ENSSDUG00000006600	rnpc3	96	54.582	ENSSBOG00000024473	RNPC3	95	54.582	Saimiri_boliviensis_boliviensis
ENSSDUG00000006600	rnpc3	97	55.336	ENSSHAG00000011859	RNPC3	95	55.336	Sarcophilus_harrisii
ENSSDUG00000006600	rnpc3	99	68.288	ENSSFOG00015013055	rnpc3	99	69.600	Scleropages_formosus
ENSSDUG00000006600	rnpc3	100	88.350	ENSSMAG00000020346	rnpc3	100	88.350	Scophthalmus_maximus
ENSSDUG00000006600	rnpc3	100	99.220	ENSSLDG00000007979	rnpc3	100	99.220	Seriola_lalandi_dorsalis
ENSSDUG00000006600	rnpc3	97	51.205	ENSSPUG00000003872	-	92	51.004	Sphenodon_punctatus
ENSSDUG00000006600	rnpc3	95	56.795	ENSSPUG00000008539	-	92	56.795	Sphenodon_punctatus
ENSSDUG00000006600	rnpc3	100	83.431	ENSSPAG00000005633	rnpc3	100	82.456	Stegastes_partitus
ENSSDUG00000006600	rnpc3	96	54.086	ENSSSCG00000037254	RNPC3	95	55.800	Sus_scrofa
ENSSDUG00000006600	rnpc3	89	56.494	ENSTGUG00000004795	-	99	56.494	Taeniopygia_guttata
ENSSDUG00000006600	rnpc3	99	77.432	ENSTNIG00000018963	rnpc3	100	77.432	Tetraodon_nigroviridis
ENSSDUG00000006600	rnpc3	96	54.762	ENSUMAG00000007775	RNPC3	96	54.762	Ursus_maritimus
ENSSDUG00000006600	rnpc3	96	54.871	ENSVVUG00000000331	RNPC3	94	54.871	Vulpes_vulpes
ENSSDUG00000006600	rnpc3	96	44.794	ENSXETG00000025027	rnpc3	96	44.314	Xenopus_tropicalis
ENSSDUG00000006600	rnpc3	54	78.909	ENSXCOG00000005013	rnpc3	100	76.437	Xiphophorus_couchianus
ENSSDUG00000006600	rnpc3	100	78.363	ENSXMAG00000006495	rnpc3	100	78.363	Xiphophorus_maculatus