EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000006646 (Gene tree)
Gene ID: 111219102
Gene Symbol: exosc10
Alias: zgc:55695
Full Name: exosome component 10
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 10559 bases
Position: chrBDQW01000056.1:3506381-3516939
Accession: 111219102
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000009129	HRDC	PF00570.23	5.8e-11	1	1
ENSSDUP00000009073	HRDC	PF00570.23	6e-11	1	1
ENSSDUP00000009073	PMC2NT	PF08066.12	3.3e-23	1	1
ENSSDUP00000009129	PMC2NT	PF08066.12	7.2e-19	1	1
ENSSDUP00000009129	DNA_pol_A_exo1	PF01612.20	6.7e-47	1	1
ENSSDUP00000009073	DNA_pol_A_exo1	PF01612.20	7.6e-47	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000009306	-	2430	-	ENSSDUP00000009129	809 (aa)	-	-
ENSSDUT00000009250	-	3141	XM_022741694	ENSSDUP00000009073	892 (aa)	XP_022597415	UPI000BBE7D31

Gene Model

Click here to download ENSSDUG00000006646's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000006646's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000006646	exosc10	98	60.782	ENSG00000171824	EXOSC10	99	61.192	Homo_sapiens
ENSSDUG00000006646	exosc10	100	88.565	ENSAPOG00000013304	exosc10	100	88.565	Acanthochromis_polyacanthus
ENSSDUG00000006646	exosc10	97	62.415	ENSAMEG00000009546	EXOSC10	97	62.415	Ailuropoda_melanoleuca
ENSSDUG00000006646	exosc10	99	80.242	ENSACIG00000020455	exosc10	98	80.958	Amphilophus_citrinellus
ENSSDUG00000006646	exosc10	100	80.884	ENSAOCG00000018823	exosc10	100	80.884	Amphiprion_ocellaris
ENSSDUG00000006646	exosc10	100	88.004	ENSAPEG00000017786	exosc10	99	88.004	Amphiprion_percula
ENSSDUG00000006646	exosc10	100	90.471	ENSATEG00000017271	exosc10	100	90.471	Anabas_testudineus
ENSSDUG00000006646	exosc10	96	63.048	ENSAPLG00000006652	EXOSC10	98	63.048	Anas_platyrhynchos
ENSSDUG00000006646	exosc10	95	59.604	ENSANAG00000031112	EXOSC10	99	59.604	Aotus_nancymaae
ENSSDUG00000006646	exosc10	100	87.668	ENSACLG00000025226	exosc10	99	87.668	Astatotilapia_calliptera
ENSSDUG00000006646	exosc10	99	71.961	ENSAMXG00000014510	exosc10	100	68.496	Astyanax_mexicanus
ENSSDUG00000006646	exosc10	80	64.507	ENSBTAG00000002590	EXOSC10	98	65.368	Bos_taurus
ENSSDUG00000006646	exosc10	67	37.852	WBGene00000796	crn-3	63	37.587	Caenorhabditis_elegans
ENSSDUG00000006646	exosc10	99	60.874	ENSCJAG00000002327	EXOSC10	99	60.874	Callithrix_jacchus
ENSSDUG00000006646	exosc10	97	62.912	ENSCAFG00000016721	EXOSC10	95	62.912	Canis_familiaris
ENSSDUG00000006646	exosc10	97	62.912	ENSCAFG00020002481	EXOSC10	95	62.912	Canis_lupus_dingo
ENSSDUG00000006646	exosc10	99	58.605	ENSCHIG00000020022	EXOSC10	99	58.605	Capra_hircus
ENSSDUG00000006646	exosc10	99	57.654	ENSTSYG00000006937	EXOSC10	99	57.654	Carlito_syrichta
ENSSDUG00000006646	exosc10	96	60.894	ENSCAPG00000006494	EXOSC10	99	61.003	Cavia_aperea
ENSSDUG00000006646	exosc10	97	60.973	ENSCPOG00000011628	EXOSC10	96	61.425	Cavia_porcellus
ENSSDUG00000006646	exosc10	99	57.812	ENSCCAG00000023223	EXOSC10	100	61.567	Cebus_capucinus
ENSSDUG00000006646	exosc10	99	61.161	ENSCATG00000039000	EXOSC10	92	69.144	Cercocebus_atys
ENSSDUG00000006646	exosc10	97	60.294	ENSCLAG00000005283	EXOSC10	97	60.747	Chinchilla_lanigera
ENSSDUG00000006646	exosc10	99	60.870	ENSCSAG00000000788	EXOSC10	99	61.279	Chlorocebus_sabaeus
ENSSDUG00000006646	exosc10	85	63.294	ENSCHOG00000012713	EXOSC10	87	63.684	Choloepus_hoffmanni
ENSSDUG00000006646	exosc10	99	62.126	ENSCPBG00000022004	EXOSC10	99	62.348	Chrysemys_picta_bellii
ENSSDUG00000006646	exosc10	67	49.551	ENSCSAVG00000009049	-	94	49.642	Ciona_savignyi
ENSSDUG00000006646	exosc10	99	60.579	ENSCANG00000042813	EXOSC10	99	60.987	Colobus_angolensis_palliatus
ENSSDUG00000006646	exosc10	97	61.688	ENSCGRG00001018469	Exosc10	97	61.688	Cricetulus_griseus_chok1gshd
ENSSDUG00000006646	exosc10	97	61.460	ENSCGRG00000002278	Exosc10	97	61.460	Cricetulus_griseus_crigri
ENSSDUG00000006646	exosc10	99	85.393	ENSCSEG00000005346	exosc10	99	85.393	Cynoglossus_semilaevis
ENSSDUG00000006646	exosc10	100	84.305	ENSCVAG00000016429	exosc10	100	84.305	Cyprinodon_variegatus
ENSSDUG00000006646	exosc10	97	70.136	ENSDARG00000037708	exosc10	100	69.265	Danio_rerio
ENSSDUG00000006646	exosc10	97	60.795	ENSDNOG00000011301	EXOSC10	98	60.795	Dasypus_novemcinctus
ENSSDUG00000006646	exosc10	98	56.935	ENSDORG00000003769	Exosc10	99	56.935	Dipodomys_ordii
ENSSDUG00000006646	exosc10	74	39.884	FBgn0038269	Rrp6	72	39.884	Drosophila_melanogaster
ENSSDUG00000006646	exosc10	94	59.014	ENSETEG00000000830	EXOSC10	97	60.432	Echinops_telfairi
ENSSDUG00000006646	exosc10	72	36.707	ENSEBUG00000004395	exosc10	99	37.895	Eptatretus_burgeri
ENSSDUG00000006646	exosc10	87	71.964	ENSEASG00005018716	EXOSC10	96	71.964	Equus_asinus_asinus
ENSSDUG00000006646	exosc10	97	62.828	ENSECAG00000011639	EXOSC10	97	62.828	Equus_caballus
ENSSDUG00000006646	exosc10	82	61.821	ENSEEUG00000001166	EXOSC10	72	61.821	Erinaceus_europaeus
ENSSDUG00000006646	exosc10	98	75.973	ENSELUG00000012870	exosc10	98	76.126	Esox_lucius
ENSSDUG00000006646	exosc10	97	61.143	ENSFCAG00000000052	EXOSC10	97	61.143	Felis_catus
ENSSDUG00000006646	exosc10	99	60.133	ENSFALG00000010287	EXOSC10	99	59.844	Ficedula_albicollis
ENSSDUG00000006646	exosc10	100	59.978	ENSFDAG00000002942	EXOSC10	100	60.088	Fukomys_damarensis
ENSSDUG00000006646	exosc10	100	83.969	ENSFHEG00000010678	exosc10	100	83.969	Fundulus_heteroclitus
ENSSDUG00000006646	exosc10	84	77.449	ENSGMOG00000006131	exosc10	90	77.449	Gadus_morhua
ENSSDUG00000006646	exosc10	97	62.089	ENSGALG00000003086	EXOSC10	95	61.765	Gallus_gallus
ENSSDUG00000006646	exosc10	99	84.032	ENSGAFG00000019222	exosc10	99	84.032	Gambusia_affinis
ENSSDUG00000006646	exosc10	99	80.357	ENSGACG00000007037	exosc10	100	80.357	Gasterosteus_aculeatus
ENSSDUG00000006646	exosc10	99	61.947	ENSGAGG00000000251	EXOSC10	100	63.203	Gopherus_agassizii
ENSSDUG00000006646	exosc10	98	61.006	ENSGGOG00000010572	EXOSC10	99	61.417	Gorilla_gorilla
ENSSDUG00000006646	exosc10	100	78.170	ENSHBUG00000020328	exosc10	100	78.170	Haplochromis_burtoni
ENSSDUG00000006646	exosc10	97	60.889	ENSHGLG00000011944	EXOSC10	97	61.231	Heterocephalus_glaber_female
ENSSDUG00000006646	exosc10	97	60.889	ENSHGLG00100014444	EXOSC10	97	61.231	Heterocephalus_glaber_male
ENSSDUG00000006646	exosc10	100	79.148	ENSHCOG00000016164	exosc10	99	79.484	Hippocampus_comes
ENSSDUG00000006646	exosc10	99	70.056	ENSIPUG00000021971	exosc10	99	69.350	Ictalurus_punctatus
ENSSDUG00000006646	exosc10	97	61.644	ENSSTOG00000005459	EXOSC10	97	61.758	Ictidomys_tridecemlineatus
ENSSDUG00000006646	exosc10	100	60.509	ENSJJAG00000013716	Exosc10	100	60.509	Jaculus_jaculus
ENSSDUG00000006646	exosc10	100	86.099	ENSKMAG00000015540	exosc10	100	85.987	Kryptolebias_marmoratus
ENSSDUG00000006646	exosc10	100	88.341	ENSLBEG00000022229	exosc10	99	88.341	Labrus_bergylta
ENSSDUG00000006646	exosc10	99	64.326	ENSLACG00000016691	EXOSC10	99	64.214	Latimeria_chalumnae
ENSSDUG00000006646	exosc10	100	69.392	ENSLOCG00000006443	exosc10	99	69.392	Lepisosteus_oculatus
ENSSDUG00000006646	exosc10	97	61.416	ENSLAFG00000016894	EXOSC10	97	62.100	Loxodonta_africana
ENSSDUG00000006646	exosc10	99	61.161	ENSMFAG00000038874	EXOSC10	99	60.382	Macaca_fascicularis
ENSSDUG00000006646	exosc10	99	61.384	ENSMMUG00000019322	EXOSC10	99	61.590	Macaca_mulatta
ENSSDUG00000006646	exosc10	99	61.161	ENSMNEG00000035812	EXOSC10	99	61.366	Macaca_nemestrina
ENSSDUG00000006646	exosc10	99	61.161	ENSMLEG00000025160	EXOSC10	99	61.573	Mandrillus_leucophaeus
ENSSDUG00000006646	exosc10	99	89.027	ENSMAMG00000019375	exosc10	100	89.027	Mastacembelus_armatus
ENSSDUG00000006646	exosc10	100	87.668	ENSMZEG00005013730	exosc10	99	87.668	Maylandia_zebra
ENSSDUG00000006646	exosc10	96	61.724	ENSMGAG00000004665	EXOSC10	99	61.609	Meleagris_gallopavo
ENSSDUG00000006646	exosc10	71	68.128	ENSMAUG00000019261	Exosc10	96	69.529	Mesocricetus_auratus
ENSSDUG00000006646	exosc10	97	62.514	ENSMICG00000003858	EXOSC10	97	62.514	Microcebus_murinus
ENSSDUG00000006646	exosc10	70	68.900	ENSMOCG00000016509	Exosc10	95	69.831	Microtus_ochrogaster
ENSSDUG00000006646	exosc10	100	81.969	ENSMMOG00000009265	exosc10	100	81.969	Mola_mola
ENSSDUG00000006646	exosc10	97	61.556	ENSMODG00000011194	EXOSC10	97	62.120	Monodelphis_domestica
ENSSDUG00000006646	exosc10	100	88.242	ENSMALG00000021322	exosc10	100	88.242	Monopterus_albus
ENSSDUG00000006646	exosc10	98	60.400	MGP_CAROLIEiJ_G0026802	Exosc10	96	69.024	Mus_caroli
ENSSDUG00000006646	exosc10	98	60.494	ENSMUSG00000017264	Exosc10	96	68.855	Mus_musculus
ENSSDUG00000006646	exosc10	98	60.874	MGP_PahariEiJ_G0029150	Exosc10	95	69.661	Mus_pahari
ENSSDUG00000006646	exosc10	98	60.831	MGP_SPRETEiJ_G0027795	Exosc10	96	68.855	Mus_spretus
ENSSDUG00000006646	exosc10	98	61.461	ENSMPUG00000016434	EXOSC10	96	61.461	Mustela_putorius_furo
ENSSDUG00000006646	exosc10	98	61.136	ENSMLUG00000004276	EXOSC10	99	61.547	Myotis_lucifugus
ENSSDUG00000006646	exosc10	97	61.644	ENSNGAG00000023829	Exosc10	97	61.644	Nannospalax_galili
ENSSDUG00000006646	exosc10	100	82.164	ENSNBRG00000006256	exosc10	100	82.164	Neolamprologus_brichardi
ENSSDUG00000006646	exosc10	97	60.428	ENSNLEG00000009539	EXOSC10	99	59.863	Nomascus_leucogenys
ENSSDUG00000006646	exosc10	64	91.892	ENSMEUG00000007020	-	71	91.892	Notamacropus_eugenii
ENSSDUG00000006646	exosc10	97	61.845	ENSOPRG00000012091	EXOSC10	98	61.845	Ochotona_princeps
ENSSDUG00000006646	exosc10	97	60.294	ENSODEG00000013285	EXOSC10	97	60.633	Octodon_degus
ENSSDUG00000006646	exosc10	87	88.960	ENSONIG00000002322	exosc10	99	88.960	Oreochromis_niloticus
ENSSDUG00000006646	exosc10	97	58.843	ENSOANG00000013322	EXOSC10	97	58.843	Ornithorhynchus_anatinus
ENSSDUG00000006646	exosc10	97	62.215	ENSOCUG00000013039	EXOSC10	98	62.329	Oryctolagus_cuniculus
ENSSDUG00000006646	exosc10	100	84.753	ENSORLG00000005117	exosc10	100	86.087	Oryzias_latipes
ENSSDUG00000006646	exosc10	100	85.090	ENSORLG00020013529	exosc10	100	85.090	Oryzias_latipes_hni
ENSSDUG00000006646	exosc10	100	85.202	ENSORLG00015005525	exosc10	100	85.202	Oryzias_latipes_hsok
ENSSDUG00000006646	exosc10	100	82.735	ENSOMEG00000003337	exosc10	100	82.735	Oryzias_melastigma
ENSSDUG00000006646	exosc10	98	56.629	ENSOGAG00000013662	EXOSC10	99	56.629	Otolemur_garnettii
ENSSDUG00000006646	exosc10	99	60.356	ENSOARG00000003668	EXOSC10	99	60.356	Ovis_aries
ENSSDUG00000006646	exosc10	98	60.670	ENSPPAG00000038356	EXOSC10	99	61.080	Pan_paniscus
ENSSDUG00000006646	exosc10	97	61.029	ENSPPRG00000022976	EXOSC10	97	61.029	Panthera_pardus
ENSSDUG00000006646	exosc10	94	60.491	ENSPTIG00000012735	EXOSC10	96	61.058	Panthera_tigris_altaica
ENSSDUG00000006646	exosc10	98	58.147	ENSPTRG00000000140	EXOSC10	99	58.512	Pan_troglodytes
ENSSDUG00000006646	exosc10	99	60.379	ENSPANG00000026088	EXOSC10	99	60.787	Papio_anubis
ENSSDUG00000006646	exosc10	100	67.559	ENSPKIG00000013098	exosc10	98	67.893	Paramormyrops_kingsleyae
ENSSDUG00000006646	exosc10	99	60.687	ENSPSIG00000005078	EXOSC10	99	61.240	Pelodiscus_sinensis
ENSSDUG00000006646	exosc10	70	87.279	ENSPMGG00000022241	exosc10	99	86.332	Periophthalmus_magnuspinnatus
ENSSDUG00000006646	exosc10	81	63.845	ENSPEMG00000007753	Exosc10	97	66.000	Peromyscus_maniculatus_bairdii
ENSSDUG00000006646	exosc10	60	49.592	ENSPMAG00000006909	exosc10	100	50.202	Petromyzon_marinus
ENSSDUG00000006646	exosc10	95	56.875	ENSPCIG00000004840	EXOSC10	95	68.089	Phascolarctos_cinereus
ENSSDUG00000006646	exosc10	100	83.520	ENSPFOG00000004744	exosc10	99	83.520	Poecilia_formosa
ENSSDUG00000006646	exosc10	100	83.184	ENSPLAG00000010253	exosc10	99	83.184	Poecilia_latipinna
ENSSDUG00000006646	exosc10	100	83.296	ENSPMEG00000005740	exosc10	99	83.296	Poecilia_mexicana
ENSSDUG00000006646	exosc10	100	83.296	ENSPREG00000016285	exosc10	99	83.296	Poecilia_reticulata
ENSSDUG00000006646	exosc10	98	60.647	ENSPPYG00000001891	EXOSC10	96	61.099	Pongo_abelii
ENSSDUG00000006646	exosc10	83	63.520	ENSPCAG00000001583	EXOSC10	93	63.520	Procavia_capensis
ENSSDUG00000006646	exosc10	98	61.781	ENSPCOG00000013742	EXOSC10	99	61.781	Propithecus_coquereli
ENSSDUG00000006646	exosc10	99	61.376	ENSPVAG00000014780	EXOSC10	99	61.376	Pteropus_vampyrus
ENSSDUG00000006646	exosc10	100	87.556	ENSPNYG00000007387	exosc10	99	87.556	Pundamilia_nyererei
ENSSDUG00000006646	exosc10	99	70.264	ENSPNAG00000028864	exosc10	100	69.935	Pygocentrus_nattereri
ENSSDUG00000006646	exosc10	97	60.874	ENSRNOG00000010719	Exosc10	97	60.538	Rattus_norvegicus
ENSSDUG00000006646	exosc10	99	54.658	ENSRBIG00000039772	EXOSC10	99	54.658	Rhinopithecus_bieti
ENSSDUG00000006646	exosc10	99	61.323	ENSRROG00000036700	EXOSC10	99	61.323	Rhinopithecus_roxellana
ENSSDUG00000006646	exosc10	65	34.650	YOR001W	-	68	35.165	Saccharomyces_cerevisiae
ENSSDUG00000006646	exosc10	97	57.192	ENSSBOG00000020768	EXOSC10	99	57.192	Saimiri_boliviensis_boliviensis
ENSSDUG00000006646	exosc10	96	59.770	ENSSHAG00000013572	EXOSC10	100	60.345	Sarcophilus_harrisii
ENSSDUG00000006646	exosc10	95	68.735	ENSSFOG00015004512	exosc10	97	69.067	Scleropages_formosus
ENSSDUG00000006646	exosc10	100	87.973	ENSSMAG00000017318	exosc10	100	88.143	Scophthalmus_maximus
ENSSDUG00000006646	exosc10	100	98.655	ENSSLDG00000025554	exosc10	100	98.655	Seriola_lalandi_dorsalis
ENSSDUG00000006646	exosc10	82	50.134	ENSSARG00000013171	EXOSC10	100	50.134	Sorex_araneus
ENSSDUG00000006646	exosc10	95	62.297	ENSSPUG00000006844	EXOSC10	96	71.826	Sphenodon_punctatus
ENSSDUG00000006646	exosc10	100	89.013	ENSSPAG00000007053	exosc10	100	89.013	Stegastes_partitus
ENSSDUG00000006646	exosc10	90	61.125	ENSSSCG00000003412	EXOSC10	100	61.125	Sus_scrofa
ENSSDUG00000006646	exosc10	96	60.023	ENSTGUG00000002231	EXOSC10	99	59.907	Taeniopygia_guttata
ENSSDUG00000006646	exosc10	99	79.759	ENSTRUG00000012484	exosc10	99	79.759	Takifugu_rubripes
ENSSDUG00000006646	exosc10	97	83.678	ENSTNIG00000015181	exosc10	99	83.871	Tetraodon_nigroviridis
ENSSDUG00000006646	exosc10	70	75.455	ENSTBEG00000017471	-	70	75.455	Tupaia_belangeri
ENSSDUG00000006646	exosc10	99	60.913	ENSTTRG00000001320	EXOSC10	99	60.913	Tursiops_truncatus
ENSSDUG00000006646	exosc10	93	62.545	ENSUAMG00000014404	EXOSC10	95	62.799	Ursus_americanus
ENSSDUG00000006646	exosc10	97	60.870	ENSUMAG00000023413	EXOSC10	99	64.756	Ursus_maritimus
ENSSDUG00000006646	exosc10	66	71.795	ENSVPAG00000004629	EXOSC10	62	72.711	Vicugna_pacos
ENSSDUG00000006646	exosc10	90	61.905	ENSVVUG00000027116	EXOSC10	100	61.905	Vulpes_vulpes
ENSSDUG00000006646	exosc10	97	56.413	ENSXETG00000006318	exosc10	99	56.413	Xenopus_tropicalis
ENSSDUG00000006646	exosc10	100	83.072	ENSXCOG00000004665	exosc10	100	83.072	Xiphophorus_couchianus
ENSSDUG00000006646	exosc10	100	83.408	ENSXMAG00000011246	exosc10	99	83.408	Xiphophorus_maculatus