EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSSDUG00000006675 (Gene tree)
Gene ID
111227657
Gene Symbol
pabpc1a
Alias
-
Full Name
poly(A) binding protein cytoplasmic 1
Gene Type
protein_coding
Species
Seriola_dumerili
Status
putative
Strand
Plus strand
Length
6077 bases
Position
chrBDQW01000191.1:1649184-1655260
Accession
111227657
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSSDUP00000009090PABPPF00658.186.8e-3211
ENSSDUP00000009090RRM_5PF13893.65.7e-0811
ENSSDUP00000009090RRM_1PF00076.222e-9214
ENSSDUP00000009090RRM_1PF00076.222e-9224
ENSSDUP00000009090RRM_1PF00076.222e-9234
ENSSDUP00000009090RRM_1PF00076.222e-9244
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSSDUT00000009266-2382XM_022753254ENSSDUP00000009090635 (aa)XP_022608975UPI000BBEED74
Gene Model
Click here to download ENSSDUG00000006675's gene model file
Pathways
Pathway IDPathway NameSource
sdu03013RNA transportKEGG
sdu03015mRNA surveillance pathwayKEGG
sdu03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000006675's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSSDUG00000006675pabpc1a5837.349ENSSDUG00000008140ELAVL28537.349
ENSSDUG00000006675pabpc1a5936.145ENSSDUG00000000045elavl48036.145
ENSSDUG00000006675pabpc1a5933.684ENSSDUG00000013574rbms2b5533.684
ENSSDUG00000006675pabpc1a5830.909ENSSDUG00000006128ncl7930.909
ENSSDUG00000006675pabpc1a6030.220ENSSDUG00000018021tial18330.220
ENSSDUG00000006675pabpc1a9876.115ENSSDUG00000012683pabpc49876.433
ENSSDUG00000006675pabpc1a5630.769ENSSDUG00000003453-8830.108
ENSSDUG00000006675pabpc1a9868.770ENSSDUG00000014743pabpc1l9968.770
ENSSDUG00000006675pabpc1a5737.333ENSSDUG00000013544rbm197037.333
ENSSDUG00000006675pabpc1a5534.884ENSSDUG00000015603-5734.884
ENSSDUG00000006675pabpc1a10088.558ENSSDUG00000011965pabpc1b10088.558
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSSDUG00000006675pabpc1a5880.102ENSG00000184388PABPC1L2B9880.102Homo_sapiens
ENSSDUG00000006675pabpc1a5880.102ENSG00000186288PABPC1L2A9880.102Homo_sapiens
ENSSDUG00000006675pabpc1a10098.740ENSAPOG00000015105pabpc1a10098.740Acanthochromis_polyacanthus
ENSSDUG00000006675pabpc1a10090.909ENSAPOG00000017776pabpc1b10090.752Acanthochromis_polyacanthus
ENSSDUG00000006675pabpc1a5880.102ENSAMEG00000019441-9880.102Ailuropoda_melanoleuca
ENSSDUG00000006675pabpc1a10086.094ENSACIG00000018366pabpc1b10086.115Amphilophus_citrinellus
ENSSDUG00000006675pabpc1a10098.110ENSACIG00000004685pabpc1a10098.110Amphilophus_citrinellus
ENSSDUG00000006675pabpc1a10090.752ENSAOCG00000019839pabpc1b10090.596Amphiprion_ocellaris
ENSSDUG00000006675pabpc1a10098.425ENSAOCG00000011656pabpc1a10098.425Amphiprion_ocellaris
ENSSDUG00000006675pabpc1a10090.752ENSAPEG00000010435pabpc1b10090.596Amphiprion_percula
ENSSDUG00000006675pabpc1a10098.425ENSAPEG00000006963pabpc1a10098.425Amphiprion_percula
ENSSDUG00000006675pabpc1a10098.583ENSATEG00000024852pabpc1a10098.583Anabas_testudineus
ENSSDUG00000006675pabpc1a10089.828ENSATEG00000012917pabpc1b10089.828Anabas_testudineus
ENSSDUG00000006675pabpc1a5880.102ENSANAG00000019429-9880.102Aotus_nancymaae
ENSSDUG00000006675pabpc1a5880.102ENSANAG00000019431-9880.102Aotus_nancymaae
ENSSDUG00000006675pabpc1a10089.185ENSACLG00000014335pabpc1b10089.185Astatotilapia_calliptera
ENSSDUG00000006675pabpc1a10097.638ENSACLG00000009399pabpc1a10097.638Astatotilapia_calliptera
ENSSDUG00000006675pabpc1a10090.752ENSAMXG00000008599pabpc1b10090.752Astyanax_mexicanus
ENSSDUG00000006675pabpc1a5977.033ENSBTAG00000052491-9877.033Bos_taurus
ENSSDUG00000006675pabpc1a5979.024ENSBTAG00000050902-9879.024Bos_taurus
ENSSDUG00000006675pabpc1a5880.102ENSCJAG00000041326-9880.102Callithrix_jacchus
ENSSDUG00000006675pabpc1a5979.024ENSCAFG00020002052-9879.024Canis_lupus_dingo
ENSSDUG00000006675pabpc1a5880.102ENSCHIG00000011138-9880.102Capra_hircus
ENSSDUG00000006675pabpc1a5880.102ENSCHIG00000006283-9880.102Capra_hircus
ENSSDUG00000006675pabpc1a5880.102ENSTSYG00000001775-9880.102Carlito_syrichta
ENSSDUG00000006675pabpc1a5880.102ENSCPOG00000009525-9880.102Cavia_porcellus
ENSSDUG00000006675pabpc1a5880.102ENSCCAG00000031524-9880.102Cebus_capucinus
ENSSDUG00000006675pabpc1a5880.102ENSCATG00000042826-9880.102Cercocebus_atys
ENSSDUG00000006675pabpc1a5880.102ENSCATG00000043125-9880.102Cercocebus_atys
ENSSDUG00000006675pabpc1a5878.061ENSCLAG00000017409-9878.061Chinchilla_lanigera
ENSSDUG00000006675pabpc1a5878.061ENSCLAG00000017412-9878.061Chinchilla_lanigera
ENSSDUG00000006675pabpc1a5880.102ENSCSAG00000000102-9880.102Chlorocebus_sabaeus
ENSSDUG00000006675pabpc1a5780.110ENSCGRG00001023387-9677.436Cricetulus_griseus_chok1gshd
ENSSDUG00000006675pabpc1a10089.028ENSCSEG00000015241-10089.028Cynoglossus_semilaevis
ENSSDUG00000006675pabpc1a9997.627ENSCSEG00000013324pabpc1a10097.627Cynoglossus_semilaevis
ENSSDUG00000006675pabpc1a10087.793ENSCVAG00000005489pabpc1b10087.793Cyprinodon_variegatus
ENSSDUG00000006675pabpc1a10097.795ENSCVAG00000021872pabpc1a10097.795Cyprinodon_variegatus
ENSSDUG00000006675pabpc1a10089.342ENSDARG00000021140pabpc1b9992.199Danio_rerio
ENSSDUG00000006675pabpc1a10091.850ENSDARG00000017219pabpc1a10091.850Danio_rerio
ENSSDUG00000006675pabpc1a5880.423ENSDNOG00000030926-9878.571Dasypus_novemcinctus
ENSSDUG00000006675pabpc1a5877.551ENSDORG00000011362-9877.551Dipodomys_ordii
ENSSDUG00000006675pabpc1a5978.641ENSEASG00005010399-9878.641Equus_asinus_asinus
ENSSDUG00000006675pabpc1a5978.641ENSECAG00000002620-9878.641Equus_caballus
ENSSDUG00000006675pabpc1a5976.020ENSEEUG00000008203-9876.020Erinaceus_europaeus
ENSSDUG00000006675pabpc1a9994.969ENSELUG00000003614pabpc1a10094.969Esox_lucius
ENSSDUG00000006675pabpc1a10088.594ENSELUG00000015062-10088.438Esox_lucius
ENSSDUG00000006675pabpc1a5958.621ENSELUG00000005389-9758.621Esox_lucius
ENSSDUG00000006675pabpc1a5880.102ENSFCAG00000039701-9880.102Felis_catus
ENSSDUG00000006675pabpc1a5880.102ENSFDAG00000005484-9880.102Fukomys_damarensis
ENSSDUG00000006675pabpc1a10088.715ENSFHEG00000008186pabpc1b10088.871Fundulus_heteroclitus
ENSSDUG00000006675pabpc1a10097.480ENSFHEG00000018979pabpc1a10097.480Fundulus_heteroclitus
ENSSDUG00000006675pabpc1a10081.395ENSGMOG00000002448-10081.240Gadus_morhua
ENSSDUG00000006675pabpc1a9993.818ENSGMOG00000013448pabpc1a9993.663Gadus_morhua
ENSSDUG00000006675pabpc1a10089.969ENSGAFG00000010193pabpc1b10089.969Gambusia_affinis
ENSSDUG00000006675pabpc1a10097.638ENSGAFG00000019750pabpc1a10097.638Gambusia_affinis
ENSSDUG00000006675pabpc1a10088.062ENSGACG00000003771pabpc1b10088.217Gasterosteus_aculeatus
ENSSDUG00000006675pabpc1a10097.795ENSGACG00000003572pabpc1a10097.795Gasterosteus_aculeatus
ENSSDUG00000006675pabpc1a5880.102ENSGGOG00000038606-9880.102Gorilla_gorilla
ENSSDUG00000006675pabpc1a5880.102ENSGGOG00000043933-9880.102Gorilla_gorilla
ENSSDUG00000006675pabpc1a10097.638ENSHBUG00000020487pabpc1a10097.638Haplochromis_burtoni
ENSSDUG00000006675pabpc1a10089.185ENSHBUG00000002075pabpc1b10089.185Haplochromis_burtoni
ENSSDUG00000006675pabpc1a5879.082ENSHGLG00000019668-9879.082Heterocephalus_glaber_female
ENSSDUG00000006675pabpc1a5879.082ENSHGLG00000019762-9879.082Heterocephalus_glaber_female
ENSSDUG00000006675pabpc1a5879.082ENSHGLG00100020854-9879.082Heterocephalus_glaber_male
ENSSDUG00000006675pabpc1a9869.600ENSHCOG00000003175pabpc1b9969.280Hippocampus_comes
ENSSDUG00000006675pabpc1a10097.953ENSHCOG00000013502pabpc1a10097.953Hippocampus_comes
ENSSDUG00000006675pabpc1a10084.772ENSIPUG00000010791-10084.615Ictalurus_punctatus
ENSSDUG00000006675pabpc1a10090.394ENSIPUG00000008848pabpc1a10090.236Ictalurus_punctatus
ENSSDUG00000006675pabpc1a7656.716ENSIPUG00000018724-7956.716Ictalurus_punctatus
ENSSDUG00000006675pabpc1a7555.094ENSIPUG00000021244-6554.886Ictalurus_punctatus
ENSSDUG00000006675pabpc1a5879.592ENSSTOG00000026028-9879.592Ictidomys_tridecemlineatus
ENSSDUG00000006675pabpc1a5879.592ENSSTOG00000022096-9879.592Ictidomys_tridecemlineatus
ENSSDUG00000006675pabpc1a5878.571ENSJJAG00000007037-9878.571Jaculus_jaculus
ENSSDUG00000006675pabpc1a10088.522ENSKMAG00000008049pabpc1b10088.679Kryptolebias_marmoratus
ENSSDUG00000006675pabpc1a10097.795ENSKMAG00000000605pabpc1a10097.795Kryptolebias_marmoratus
ENSSDUG00000006675pabpc1a10097.953ENSLBEG00000024002-10097.953Labrus_bergylta
ENSSDUG00000006675pabpc1a10089.655ENSLBEG00000026845pabpc1b10089.498Labrus_bergylta
ENSSDUG00000006675pabpc1a5878.974ENSLAFG00000023096-9878.974Loxodonta_africana
ENSSDUG00000006675pabpc1a5879.695ENSMFAG00000028878-9879.695Macaca_fascicularis
ENSSDUG00000006675pabpc1a5880.102ENSMMUG00000037681-9880.102Macaca_mulatta
ENSSDUG00000006675pabpc1a5880.102ENSMMUG00000009740-9880.102Macaca_mulatta
ENSSDUG00000006675pabpc1a5880.102ENSMMUG00000039929-9880.102Macaca_mulatta
ENSSDUG00000006675pabpc1a5880.102ENSMNEG00000037732-9880.102Macaca_nemestrina
ENSSDUG00000006675pabpc1a5880.102ENSMLEG00000027495-9880.102Mandrillus_leucophaeus
ENSSDUG00000006675pabpc1a10089.969ENSMAMG00000014610pabpc1b10089.969Mastacembelus_armatus
ENSSDUG00000006675pabpc1a10098.425ENSMAMG00000004502-10098.425Mastacembelus_armatus
ENSSDUG00000006675pabpc1a10089.185ENSMZEG00005026745pabpc1b10089.185Maylandia_zebra
ENSSDUG00000006675pabpc1a10097.638ENSMZEG00005025416pabpc1a10097.638Maylandia_zebra
ENSSDUG00000006675pabpc1a5880.102ENSMICG00000047642-9880.102Microcebus_murinus
ENSSDUG00000006675pabpc1a10096.250ENSMMOG00000018044pabpc1a10096.250Mola_mola
ENSSDUG00000006675pabpc1a10084.615ENSMMOG00000018009pabpc1b10084.772Mola_mola
ENSSDUG00000006675pabpc1a9872.713ENSMODG00000013156-9873.163Monodelphis_domestica
ENSSDUG00000006675pabpc1a9965.831ENSMODG00000015024-9965.674Monodelphis_domestica
ENSSDUG00000006675pabpc1a10098.268ENSMALG00000013020-10098.268Monopterus_albus
ENSSDUG00000006675pabpc1a10083.673ENSMALG00000006066pabpc1b10085.400Monopterus_albus
ENSSDUG00000006675pabpc1a5881.967ENSNGAG00000012688-9878.571Nannospalax_galili
ENSSDUG00000006675pabpc1a10089.185ENSNBRG00000013737pabpc1b10089.185Neolamprologus_brichardi
ENSSDUG00000006675pabpc1a10097.480ENSNBRG00000003068-10097.480Neolamprologus_brichardi
ENSSDUG00000006675pabpc1a5880.102ENSNLEG00000018128-9880.102Nomascus_leucogenys
ENSSDUG00000006675pabpc1a5879.592ENSODEG00000018540-9879.592Octodon_degus
ENSSDUG00000006675pabpc1a10089.655ENSONIG00000002717pabpc1b10089.655Oreochromis_niloticus
ENSSDUG00000006675pabpc1a10097.165ENSONIG00000006871-10097.165Oreochromis_niloticus
ENSSDUG00000006675pabpc1a5880.102ENSOCUG00000002565-9880.102Oryctolagus_cuniculus
ENSSDUG00000006675pabpc1a10084.615ENSORLG00000003008-10084.615Oryzias_latipes
ENSSDUG00000006675pabpc1a9998.810ENSORLG00000002691pabpc1a10096.850Oryzias_latipes
ENSSDUG00000006675pabpc1a10084.458ENSORLG00020022259-10084.458Oryzias_latipes_hni
ENSSDUG00000006675pabpc1a10097.008ENSORLG00020022398pabpc1a10097.008Oryzias_latipes_hni
ENSSDUG00000006675pabpc1a10084.929ENSORLG00015010932-10084.929Oryzias_latipes_hsok
ENSSDUG00000006675pabpc1a10096.850ENSORLG00015013633pabpc110096.850Oryzias_latipes_hsok
ENSSDUG00000006675pabpc1a9081.693ENSOMEG00000013627pabpc1b10081.693Oryzias_melastigma
ENSSDUG00000006675pabpc1a10097.795ENSOMEG00000020219pabpc1a10097.795Oryzias_melastigma
ENSSDUG00000006675pabpc1a5880.102ENSOGAG00000029513-9880.102Otolemur_garnettii
ENSSDUG00000006675pabpc1a5880.102ENSOGAG00000026047-9880.102Otolemur_garnettii
ENSSDUG00000006675pabpc1a5880.102ENSOARG00000005943-9880.102Ovis_aries
ENSSDUG00000006675pabpc1a5880.102ENSPPAG00000012920-9880.102Pan_paniscus
ENSSDUG00000006675pabpc1a5880.102ENSPPRG00000011809-9880.102Panthera_pardus
ENSSDUG00000006675pabpc1a5880.102ENSPPRG00000011804-9880.102Panthera_pardus
ENSSDUG00000006675pabpc1a5880.102ENSPTRG00000028252-9880.102Pan_troglodytes
ENSSDUG00000006675pabpc1a5880.102ENSPANG00000011549-9880.102Papio_anubis
ENSSDUG00000006675pabpc1a10090.125ENSPKIG00000005676pabpc1b10090.125Paramormyrops_kingsleyae
ENSSDUG00000006675pabpc1a7097.528ENSPMGG00000022487pabpc1a9297.528Periophthalmus_magnuspinnatus
ENSSDUG00000006675pabpc1a7091.704ENSPMGG00000023134-9791.704Periophthalmus_magnuspinnatus
ENSSDUG00000006675pabpc1a9971.632ENSPCIG00000016995-5571.632Phascolarctos_cinereus
ENSSDUG00000006675pabpc1a10089.498ENSPFOG00000005917pabpc1b10089.655Poecilia_formosa
ENSSDUG00000006675pabpc1a10096.136ENSPFOG00000010815pabpc1a10096.136Poecilia_formosa
ENSSDUG00000006675pabpc1a10098.110ENSPLAG00000004114pabpc1a10098.110Poecilia_latipinna
ENSSDUG00000006675pabpc1a10089.812ENSPLAG00000001388pabpc1b10089.969Poecilia_latipinna
ENSSDUG00000006675pabpc1a10089.498ENSPMEG00000014399pabpc1b10089.655Poecilia_mexicana
ENSSDUG00000006675pabpc1a10098.110ENSPMEG00000001334pabpc1a10098.110Poecilia_mexicana
ENSSDUG00000006675pabpc1a10095.008ENSPREG00000019595pabpc1a10095.413Poecilia_reticulata
ENSSDUG00000006675pabpc1a10089.812ENSPREG00000010911pabpc1b10089.969Poecilia_reticulata
ENSSDUG00000006675pabpc1a5880.102ENSPPYG00000020468-9880.102Pongo_abelii
ENSSDUG00000006675pabpc1a5980.102ENSPCAG00000005308-9880.102Procavia_capensis
ENSSDUG00000006675pabpc1a5879.592ENSPCOG00000026349-9879.592Propithecus_coquereli
ENSSDUG00000006675pabpc1a5980.513ENSPVAG00000016117-9880.513Pteropus_vampyrus
ENSSDUG00000006675pabpc1a10089.185ENSPNYG00000012578pabpc1b10089.185Pundamilia_nyererei
ENSSDUG00000006675pabpc1a10097.638ENSPNYG00000005192pabpc1a10097.638Pundamilia_nyererei
ENSSDUG00000006675pabpc1a10091.523ENSPNAG00000028408pabpc1a10091.209Pygocentrus_nattereri
ENSSDUG00000006675pabpc1a10090.125ENSPNAG00000024626pabpc1b10090.125Pygocentrus_nattereri
ENSSDUG00000006675pabpc1a9189.227ENSRBIG00000028738-9589.227Rhinopithecus_bieti
ENSSDUG00000006675pabpc1a5880.102ENSRBIG00000027173-9880.102Rhinopithecus_bieti
ENSSDUG00000006675pabpc1a5880.102ENSRROG00000017404-9880.102Rhinopithecus_roxellana
ENSSDUG00000006675pabpc1a9863.782ENSSHAG00000000511-10063.782Sarcophilus_harrisii
ENSSDUG00000006675pabpc1a6978.613ENSSFOG00015019668-8878.613Scleropages_formosus
ENSSDUG00000006675pabpc1a10091.209ENSSFOG00015002752-10091.052Scleropages_formosus
ENSSDUG00000006675pabpc1a10090.110ENSSFOG00015006662pabpc1a10090.424Scleropages_formosus
ENSSDUG00000006675pabpc1a10089.028ENSSMAG00000006869pabpc1b10089.028Scophthalmus_maximus
ENSSDUG00000006675pabpc1a10097.953ENSSMAG00000010803pabpc1a10097.953Scophthalmus_maximus
ENSSDUG00000006675pabpc1a100100.000ENSSLDG00000011661pabpc1a100100.000Seriola_lalandi_dorsalis
ENSSDUG00000006675pabpc1a10090.202ENSSLDG00000014156pabpc1b10090.202Seriola_lalandi_dorsalis
ENSSDUG00000006675pabpc1a10090.909ENSSPAG00000019265pabpc1b10090.909Stegastes_partitus
ENSSDUG00000006675pabpc1a10098.425ENSSPAG00000014453-10098.425Stegastes_partitus
ENSSDUG00000006675pabpc1a5880.102ENSSSCG00000036336-9880.102Sus_scrofa
ENSSDUG00000006675pabpc1a5880.102ENSSSCG00000032167-9880.102Sus_scrofa
ENSSDUG00000006675pabpc1a10095.126ENSTRUG00000011577-10095.126Takifugu_rubripes
ENSSDUG00000006675pabpc1a10086.385ENSTRUG00000003767-10086.854Takifugu_rubripes
ENSSDUG00000006675pabpc1a10086.916ENSTNIG00000009153pabpc1b10086.916Tetraodon_nigroviridis
ENSSDUG00000006675pabpc1a10092.403ENSTNIG00000013307pabpc1a10092.403Tetraodon_nigroviridis
ENSSDUG00000006675pabpc1a5880.102ENSTTRG00000013181-9880.102Tursiops_truncatus
ENSSDUG00000006675pabpc1a5880.102ENSUAMG00000008089-9880.102Ursus_americanus
ENSSDUG00000006675pabpc1a5880.102ENSUMAG00000003364-9880.102Ursus_maritimus
ENSSDUG00000006675pabpc1a9754.369ENSUMAG00000023926-8969.890Ursus_maritimus
ENSSDUG00000006675pabpc1a5879.000ENSVVUG00000015892-9779.000Vulpes_vulpes
ENSSDUG00000006675pabpc1a9745.688ENSXETG00000015439-9745.392Xenopus_tropicalis
ENSSDUG00000006675pabpc1a10092.126ENSXCOG00000017066pabpc1a10092.126Xiphophorus_couchianus
ENSSDUG00000006675pabpc1a10085.893ENSXCOG00000019901pabpc1b10085.737Xiphophorus_couchianus
ENSSDUG00000006675pabpc1a10089.969ENSXMAG00000003753pabpc1b10089.969Xiphophorus_maculatus
ENSSDUG00000006675pabpc1a10098.425ENSXMAG00000002555pabpc1a10098.425Xiphophorus_maculatus

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