EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000006730 (Gene tree)
Gene ID: 111231015
Gene Symbol: -
Alias: -
Full Name: heterogeneous nuclear ribonucleoprotein C-like
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 10776 bases
Position: chrBDQW01000291.1:431669-442444
Accession: 111231015
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000009149	RRM_1	PF00076.22	9.5e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000009328	-	2206	XM_022757949	ENSSDUP00000009149	313 (aa)	XP_022613670	UPI000BBEA262

Gene Model

Click here to download ENSSDUG00000006730's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000006730's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000006730	-	84	49.827	ENSSDUG00000012473	-	75	54.425
ENSSDUG00000006730	-	87	83.696	ENSSDUG00000001723	-	98	78.778
ENSSDUG00000006730	-	67	51.389	ENSSDUG00000002411	raly	71	52.294
ENSSDUG00000006730	-	86	51.724	ENSSDUG00000007587	-	73	57.273

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000006730	-	86	48.110	ENSG00000184672	RALYL	93	77.215	Homo_sapiens
ENSSDUG00000006730	-	80	86.111	ENSAPOG00000006963	hnrnpc	98	78.135	Acanthochromis_polyacanthus
ENSSDUG00000006730	-	81	84.496	ENSACIG00000000270	-	99	77.778	Amphilophus_citrinellus
ENSSDUG00000006730	-	97	87.662	ENSACIG00000016568	-	100	87.338	Amphilophus_citrinellus
ENSSDUG00000006730	-	100	86.687	ENSAOCG00000021616	-	100	86.997	Amphiprion_ocellaris
ENSSDUG00000006730	-	80	85.714	ENSAOCG00000003896	-	98	77.814	Amphiprion_ocellaris
ENSSDUG00000006730	-	80	85.714	ENSAPEG00000001489	-	98	77.814	Amphiprion_percula
ENSSDUG00000006730	-	84	89.474	ENSAPEG00000019962	-	100	75.728	Amphiprion_percula
ENSSDUG00000006730	-	81	85.938	ENSATEG00000011734	-	99	79.934	Anabas_testudineus
ENSSDUG00000006730	-	100	94.099	ENSATEG00000018006	-	100	94.099	Anabas_testudineus
ENSSDUG00000006730	-	83	48.432	ENSAPLG00000015574	RALYL	79	54.043	Anas_platyrhynchos
ENSSDUG00000006730	-	83	49.301	ENSACAG00000028464	RALYL	78	54.468	Anolis_carolinensis
ENSSDUG00000006730	-	86	47.766	ENSANAG00000023383	RALYL	78	56.637	Aotus_nancymaae
ENSSDUG00000006730	-	80	81.028	ENSACLG00000000995	-	83	85.714	Astatotilapia_calliptera
ENSSDUG00000006730	-	84	87.266	ENSACLG00000005707	-	90	88.015	Astatotilapia_calliptera
ENSSDUG00000006730	-	80	80.632	ENSACLG00000013636	-	87	81.818	Astatotilapia_calliptera
ENSSDUG00000006730	-	84	79.468	ENSAMXG00000034915	zgc:55733	91	76.806	Astyanax_mexicanus
ENSSDUG00000006730	-	66	79.904	ENSAMXG00000042946	hnrnpc	99	77.436	Astyanax_mexicanus
ENSSDUG00000006730	-	86	47.423	ENSCJAG00000000402	RALYL	78	56.637	Callithrix_jacchus
ENSSDUG00000006730	-	83	49.123	ENSCPOG00000012314	RALYL	78	54.701	Cavia_porcellus
ENSSDUG00000006730	-	86	47.766	ENSCCAG00000025003	RALYL	77	77.215	Cebus_capucinus
ENSSDUG00000006730	-	86	48.110	ENSCATG00000042145	RALYL	78	57.080	Cercocebus_atys
ENSSDUG00000006730	-	83	49.123	ENSCLAG00000005228	RALYL	78	54.701	Chinchilla_lanigera
ENSSDUG00000006730	-	67	53.982	ENSCHOG00000013228	RALYL	75	52.679	Choloepus_hoffmanni
ENSSDUG00000006730	-	86	48.110	ENSCANG00000039144	RALYL	78	57.080	Colobus_angolensis_palliatus
ENSSDUG00000006730	-	83	48.252	ENSCGRG00001009241	Ralyl	78	54.043	Cricetulus_griseus_chok1gshd
ENSSDUG00000006730	-	83	81.369	ENSCSEG00000021349	-	100	76.947	Cynoglossus_semilaevis
ENSSDUG00000006730	-	70	78.475	ENSCSEG00000019769	-	75	76.233	Cynoglossus_semilaevis
ENSSDUG00000006730	-	86	67.273	ENSCVAG00000002797	-	86	66.409	Cyprinodon_variegatus
ENSSDUG00000006730	-	100	84.000	ENSCVAG00000016981	-	100	86.154	Cyprinodon_variegatus
ENSSDUG00000006730	-	84	82.061	ENSDARG00000103845	zgc:55733	93	77.606	Danio_rerio
ENSSDUG00000006730	-	78	82.927	ENSDARG00000053810	hnrnpc	99	77.287	Danio_rerio
ENSSDUG00000006730	-	83	49.301	ENSDORG00000003721	Ralyl	78	54.894	Dipodomys_ordii
ENSSDUG00000006730	-	52	56.897	ENSETEG00000014028	RALYL	82	59.877	Echinops_telfairi
ENSSDUG00000006730	-	69	47.807	ENSEBUG00000012363	hnrnpc	67	46.930	Eptatretus_burgeri
ENSSDUG00000006730	-	66	50.233	ENSEBUG00000006049	RALYL	74	48.837	Eptatretus_burgeri
ENSSDUG00000006730	-	83	49.474	ENSEEUG00000007202	RALYL	79	54.310	Erinaceus_europaeus
ENSSDUG00000006730	-	96	81.433	ENSELUG00000004132	-	99	81.433	Esox_lucius
ENSSDUG00000006730	-	79	79.323	ENSELUG00000007714	-	93	75.362	Esox_lucius
ENSSDUG00000006730	-	83	47.535	ENSFALG00000008647	RALYL	97	57.407	Ficedula_albicollis
ENSSDUG00000006730	-	81	86.667	ENSFHEG00000007278	-	100	80.793	Fundulus_heteroclitus
ENSSDUG00000006730	-	87	77.698	ENSFHEG00000003605	-	86	76.604	Fundulus_heteroclitus
ENSSDUG00000006730	-	83	44.079	ENSGALG00000036938	RALYL	92	44.850	Gallus_gallus
ENSSDUG00000006730	-	97	82.051	ENSGAFG00000020992	-	100	85.256	Gambusia_affinis
ENSSDUG00000006730	-	87	76.259	ENSGAFG00000020486	-	98	71.565	Gambusia_affinis
ENSSDUG00000006730	-	100	76.261	ENSGACG00000017772	-	97	84.921	Gasterosteus_aculeatus
ENSSDUG00000006730	-	70	73.303	ENSGACG00000018932	-	89	72.197	Gasterosteus_aculeatus
ENSSDUG00000006730	-	86	48.110	ENSGGOG00000000841	RALYL	78	57.080	Gorilla_gorilla
ENSSDUG00000006730	-	100	86.520	ENSHBUG00000010527	-	100	87.774	Haplochromis_burtoni
ENSSDUG00000006730	-	80	81.423	ENSHBUG00000018342	-	85	82.576	Haplochromis_burtoni
ENSSDUG00000006730	-	83	48.772	ENSHGLG00000004866	RALYL	78	54.274	Heterocephalus_glaber_female
ENSSDUG00000006730	-	83	48.772	ENSHGLG00100017480	RALYL	78	54.274	Heterocephalus_glaber_male
ENSSDUG00000006730	-	93	74.510	ENSHCOG00000012333	hnrnpc	91	79.496	Hippocampus_comes
ENSSDUG00000006730	-	84	78.030	ENSIPUG00000011271	hnrnpc	98	82.222	Ictalurus_punctatus
ENSSDUG00000006730	-	84	81.749	ENSIPUG00000008666	zgc:55733	95	80.556	Ictalurus_punctatus
ENSSDUG00000006730	-	83	48.951	ENSSTOG00000012583	RALYL	80	54.468	Ictidomys_tridecemlineatus
ENSSDUG00000006730	-	86	80.147	ENSKMAG00000011170	-	84	82.692	Kryptolebias_marmoratus
ENSSDUG00000006730	-	100	82.555	ENSKMAG00000018265	-	100	81.931	Kryptolebias_marmoratus
ENSSDUG00000006730	-	86	78.388	ENSLBEG00000006979	-	85	81.855	Labrus_bergylta
ENSSDUG00000006730	-	87	74.737	ENSLBEG00000024418	-	86	73.282	Labrus_bergylta
ENSSDUG00000006730	-	100	85.489	ENSLBEG00000006193	-	100	85.804	Labrus_bergylta
ENSSDUG00000006730	-	83	71.805	ENSLOCG00000002560	hnrnpc	91	72.285	Lepisosteus_oculatus
ENSSDUG00000006730	-	86	48.110	ENSMNEG00000033288	RALYL	78	57.080	Macaca_nemestrina
ENSSDUG00000006730	-	86	48.110	ENSMLEG00000038284	RALYL	78	57.080	Mandrillus_leucophaeus
ENSSDUG00000006730	-	100	84.112	ENSMAMG00000008033	-	100	85.047	Mastacembelus_armatus
ENSSDUG00000006730	-	80	86.508	ENSMAMG00000012236	-	98	78.457	Mastacembelus_armatus
ENSSDUG00000006730	-	81	80.077	ENSMZEG00005020460	-	88	80.077	Maylandia_zebra
ENSSDUG00000006730	-	100	86.520	ENSMZEG00005024249	-	100	87.774	Maylandia_zebra
ENSSDUG00000006730	-	83	48.252	ENSMAUG00000015149	Ralyl	78	54.043	Mesocricetus_auratus
ENSSDUG00000006730	-	86	48.110	ENSMICG00000005558	RALYL	80	77.215	Microcebus_murinus
ENSSDUG00000006730	-	83	48.944	ENSMOCG00000017371	Ralyl	78	54.043	Microtus_ochrogaster
ENSSDUG00000006730	-	90	86.301	ENSMMOG00000019520	-	100	87.329	Mola_mola
ENSSDUG00000006730	-	83	81.749	ENSMMOG00000021465	-	92	82.129	Mola_mola
ENSSDUG00000006730	-	84	91.288	ENSMALG00000014623	-	84	91.288	Monopterus_albus
ENSSDUG00000006730	-	81	76.863	ENSMALG00000007520	-	85	77.953	Monopterus_albus
ENSSDUG00000006730	-	83	47.902	ENSMUSG00000039717	Ralyl	93	75.949	Mus_musculus
ENSSDUG00000006730	-	83	49.648	ENSMPUG00000010724	RALYL	78	53.617	Mustela_putorius_furo
ENSSDUG00000006730	-	83	48.252	ENSNGAG00000013375	Ralyl	78	54.043	Nannospalax_galili
ENSSDUG00000006730	-	81	81.783	ENSNBRG00000004912	-	94	81.416	Neolamprologus_brichardi
ENSSDUG00000006730	-	100	86.250	ENSNBRG00000015676	-	100	87.188	Neolamprologus_brichardi
ENSSDUG00000006730	-	83	50.730	ENSNLEG00000002702	RALYL	74	57.080	Nomascus_leucogenys
ENSSDUG00000006730	-	57	51.295	ENSOPRG00000013650	-	98	49.215	Ochotona_princeps
ENSSDUG00000006730	-	83	49.296	ENSODEG00000001012	RALYL	78	53.879	Octodon_degus
ENSSDUG00000006730	-	80	82.213	ENSONIG00000007859	-	99	75.962	Oreochromis_niloticus
ENSSDUG00000006730	-	100	86.834	ENSONIG00000018350	-	100	87.461	Oreochromis_niloticus
ENSSDUG00000006730	-	100	81.818	ENSORLG00000003144	-	100	81.818	Oryzias_latipes
ENSSDUG00000006730	-	80	72.835	ENSORLG00000009999	-	85	73.585	Oryzias_latipes
ENSSDUG00000006730	-	80	72.441	ENSORLG00020018228	hnrnpc	85	73.208	Oryzias_latipes_hni
ENSSDUG00000006730	-	100	83.735	ENSORLG00015009460	-	100	83.434	Oryzias_latipes_hsok
ENSSDUG00000006730	-	80	72.835	ENSORLG00015019755	-	85	73.585	Oryzias_latipes_hsok
ENSSDUG00000006730	-	100	85.893	ENSOMEG00000022665	-	100	85.893	Oryzias_melastigma
ENSSDUG00000006730	-	80	74.409	ENSOMEG00000020488	-	85	75.094	Oryzias_melastigma
ENSSDUG00000006730	-	86	48.110	ENSPPAG00000038705	RALYL	78	57.080	Pan_paniscus
ENSSDUG00000006730	-	86	49.658	ENSPPRG00000018612	RALYL	78	56.388	Panthera_pardus
ENSSDUG00000006730	-	86	49.658	ENSPTIG00000020331	RALYL	78	56.388	Panthera_tigris_altaica
ENSSDUG00000006730	-	86	48.110	ENSPTRG00000020381	RALYL	78	57.080	Pan_troglodytes
ENSSDUG00000006730	-	86	48.110	ENSPANG00000029305	RALYL	78	57.080	Papio_anubis
ENSSDUG00000006730	-	82	78.358	ENSPKIG00000022837	-	98	76.176	Paramormyrops_kingsleyae
ENSSDUG00000006730	-	84	79.853	ENSPKIG00000008592	-	100	73.375	Paramormyrops_kingsleyae
ENSSDUG00000006730	-	67	54.867	ENSPSIG00000011135	RALYL	78	54.043	Pelodiscus_sinensis
ENSSDUG00000006730	-	70	92.202	ENSPMGG00000013144	-	82	92.202	Periophthalmus_magnuspinnatus
ENSSDUG00000006730	-	95	63.851	ENSPMGG00000017774	-	96	67.672	Periophthalmus_magnuspinnatus
ENSSDUG00000006730	-	83	48.252	ENSPEMG00000016447	Ralyl	78	54.043	Peromyscus_maniculatus_bairdii
ENSSDUG00000006730	-	67	54.626	ENSPMAG00000002407	RALYL	97	52.402	Petromyzon_marinus
ENSSDUG00000006730	-	100	81.988	ENSPFOG00000002643	-	100	85.093	Poecilia_formosa
ENSSDUG00000006730	-	87	76.895	ENSPFOG00000001583	-	98	73.163	Poecilia_formosa
ENSSDUG00000006730	-	87	75.725	ENSPLAG00000015305	-	98	72.115	Poecilia_latipinna
ENSSDUG00000006730	-	100	82.043	ENSPLAG00000000061	-	100	84.520	Poecilia_latipinna
ENSSDUG00000006730	-	87	78.417	ENSPMEG00000004802	-	98	73.163	Poecilia_mexicana
ENSSDUG00000006730	-	100	81.677	ENSPMEG00000016524	-	100	85.404	Poecilia_mexicana
ENSSDUG00000006730	-	80	77.559	ENSPREG00000007928	-	86	77.736	Poecilia_reticulata
ENSSDUG00000006730	-	84	86.415	ENSPREG00000001852	-	89	86.415	Poecilia_reticulata
ENSSDUG00000006730	-	83	43.866	ENSPPYG00000018710	-	68	72.115	Pongo_abelii
ENSSDUG00000006730	-	83	48.763	ENSPVAG00000010821	RALYL	78	54.043	Pteropus_vampyrus
ENSSDUG00000006730	-	81	82.558	ENSPNYG00000020293	-	87	82.946	Pundamilia_nyererei
ENSSDUG00000006730	-	99	74.286	ENSPNYG00000003747	-	90	88.015	Pundamilia_nyererei
ENSSDUG00000006730	-	78	84.082	ENSPNAG00000015686	hnrnpc	89	81.818	Pygocentrus_nattereri
ENSSDUG00000006730	-	84	75.185	ENSPNAG00000019200	zgc:55733	86	74.444	Pygocentrus_nattereri
ENSSDUG00000006730	-	83	50.730	ENSRROG00000023925	RALYL	82	75.309	Rhinopithecus_roxellana
ENSSDUG00000006730	-	87	75.439	ENSSFOG00015012924	-	80	96.203	Scleropages_formosus
ENSSDUG00000006730	-	84	76.471	ENSSFOG00015012015	-	95	74.534	Scleropages_formosus
ENSSDUG00000006730	-	100	86.111	ENSSMAG00000011147	-	100	87.037	Scophthalmus_maximus
ENSSDUG00000006730	-	80	80.952	ENSSMAG00000013592	-	99	76.582	Scophthalmus_maximus
ENSSDUG00000006730	-	84	84.644	ENSSLDG00000007454	-	86	86.312	Seriola_lalandi_dorsalis
ENSSDUG00000006730	-	90	99.288	ENSSLDG00000007474	-	98	99.288	Seriola_lalandi_dorsalis
ENSSDUG00000006730	-	59	72.115	ENSSARG00000002374	RALYL	59	62.992	Sorex_araneus
ENSSDUG00000006730	-	86	84.559	ENSSPAG00000023204	-	98	78.778	Stegastes_partitus
ENSSDUG00000006730	-	100	94.969	ENSSPAG00000013996	-	100	94.969	Stegastes_partitus
ENSSDUG00000006730	-	83	48.239	ENSTGUG00000011689	RALYL	80	54.077	Taeniopygia_guttata
ENSSDUG00000006730	-	84	80.608	ENSTRUG00000020158	-	98	79.264	Takifugu_rubripes
ENSSDUG00000006730	-	80	84.921	ENSTNIG00000000334	-	94	79.923	Tetraodon_nigroviridis
ENSSDUG00000006730	-	81	79.615	ENSTNIG00000007427	-	84	80.000	Tetraodon_nigroviridis
ENSSDUG00000006730	-	67	49.107	ENSTBEG00000005551	RALYL	91	47.863	Tupaia_belangeri
ENSSDUG00000006730	-	83	48.214	ENSTTRG00000015762	RALYL	74	53.670	Tursiops_truncatus
ENSSDUG00000006730	-	83	46.715	ENSVPAG00000008501	RALYL	78	51.770	Vicugna_pacos
ENSSDUG00000006730	-	50	91.411	ENSXCOG00000019434	-	93	77.626	Xiphophorus_couchianus
ENSSDUG00000006730	-	85	71.691	ENSXCOG00000006552	-	82	72.157	Xiphophorus_couchianus
ENSSDUG00000006730	-	84	86.415	ENSXMAG00000022849	-	86	86.415	Xiphophorus_maculatus
ENSSDUG00000006730	-	87	77.698	ENSXMAG00000009333	-	98	71.565	Xiphophorus_maculatus