EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000006736 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 7128 bases
Position: chrBDQW01000161.1:753230-760357
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000009268	Sua5_yciO_yrdC	PF01300.18	5e-28	1	1
ENSSDUP00000009225	Sua5_yciO_yrdC	PF01300.18	1.6e-27	1	1
ENSSDUP00000009252	Sua5_yciO_yrdC	PF01300.18	1.1e-26	1	1
ENSSDUP00000009291	Sua5_yciO_yrdC	PF01300.18	9.8e-26	1	1
ENSSDUP00000009191	Sua5_yciO_yrdC	PF01300.18	7.3e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000009472	-	540	-	ENSSDUP00000009291	179 (aa)	-	-
ENSSDUT00000009370	-	471	-	ENSSDUP00000009191	156 (aa)	-	-
ENSSDUT00000009405	-	651	-	ENSSDUP00000009225	216 (aa)	-	-
ENSSDUT00000009448	-	669	-	ENSSDUP00000009268	222 (aa)	-	-
ENSSDUT00000009432	-	852	-	ENSSDUP00000009252	283 (aa)	-	-

Gene Model

Click here to download ENSSDUG00000006736's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000006736's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000006736	-	77	36.000	ENSSDUG00000009775	yrdc	53	36.667
ENSSDUG00000006736	-	97	85.646	ENSSDUG00000006631	-	91	80.976

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000006736	-	83	30.000	ENSG00000196449	YRDC	54	30.000	Homo_sapiens
ENSSDUG00000006736	-	77	36.000	ENSAPOG00000024293	yrdc	54	36.000	Acanthochromis_polyacanthus
ENSSDUG00000006736	-	77	32.667	ENSACIG00000017330	yrdc	53	32.667	Amphilophus_citrinellus
ENSSDUG00000006736	-	77	36.000	ENSAOCG00000021647	yrdc	54	36.000	Amphiprion_ocellaris
ENSSDUG00000006736	-	77	36.000	ENSAPEG00000006164	yrdc	54	36.000	Amphiprion_percula
ENSSDUG00000006736	-	77	32.258	ENSATEG00000010086	yrdc	53	32.258	Anabas_testudineus
ENSSDUG00000006736	-	78	30.263	ENSANAG00000028788	-	63	30.000	Aotus_nancymaae
ENSSDUG00000006736	-	75	34.014	ENSACLG00000027775	yrdc	52	34.694	Astatotilapia_calliptera
ENSSDUG00000006736	-	77	33.333	ENSAMXG00000037791	yrdc	58	33.333	Astyanax_mexicanus
ENSSDUG00000006736	-	63	30.147	ENSBTAG00000006510	YRDC	66	30.000	Bos_taurus
ENSSDUG00000006736	-	67	30.000	ENSCAFG00020007843	YRDC	54	30.000	Canis_lupus_dingo
ENSSDUG00000006736	-	81	31.847	ENSCHIG00000007882	YRDC	67	31.841	Capra_hircus
ENSSDUG00000006736	-	83	30.675	ENSCPOG00000036144	YRDC	53	31.818	Cavia_porcellus
ENSSDUG00000006736	-	83	30.000	ENSCCAG00000028891	YRDC	54	30.000	Cebus_capucinus
ENSSDUG00000006736	-	83	30.000	ENSCATG00000036928	YRDC	54	30.000	Cercocebus_atys
ENSSDUG00000006736	-	74	31.973	ENSCLAG00000015012	YRDC	67	31.373	Chinchilla_lanigera
ENSSDUG00000006736	-	83	30.000	ENSCSAG00000001116	YRDC	54	30.000	Chlorocebus_sabaeus
ENSSDUG00000006736	-	73	32.414	ENSCHOG00000005500	YRDC	83	31.492	Choloepus_hoffmanni
ENSSDUG00000006736	-	77	36.667	ENSCPBG00000018446	YRDC	60	36.667	Chrysemys_picta_bellii
ENSSDUG00000006736	-	78	33.113	ENSCING00000007564	-	69	32.680	Ciona_intestinalis
ENSSDUG00000006736	-	76	35.135	ENSCSAVG00000009982	-	65	35.135	Ciona_savignyi
ENSSDUG00000006736	-	83	30.625	ENSCANG00000031111	YRDC	67	30.348	Colobus_angolensis_palliatus
ENSSDUG00000006736	-	90	30.114	ENSCGRG00001014496	-	56	30.114	Cricetulus_griseus_chok1gshd
ENSSDUG00000006736	-	75	34.459	ENSCSEG00000019075	yrdc	51	34.459	Cynoglossus_semilaevis
ENSSDUG00000006736	-	77	33.333	ENSCVAG00000017355	yrdc	53	33.333	Cyprinodon_variegatus
ENSSDUG00000006736	-	75	32.215	ENSDARG00000041428	yrdc	60	31.818	Danio_rerio
ENSSDUG00000006736	-	81	32.484	ENSDNOG00000038789	-	73	31.841	Dasypus_novemcinctus
ENSSDUG00000006736	-	71	30.935	ENSDORG00000008788	Yrdc	59	31.034	Dipodomys_ordii
ENSSDUG00000006736	-	94	31.694	FBgn0061361	CG33786	68	31.694	Drosophila_melanogaster
ENSSDUG00000006736	-	78	33.553	ENSEBUG00000014080	yrdc	67	30.120	Eptatretus_burgeri
ENSSDUG00000006736	-	78	30.921	ENSEASG00005012253	YRDC	53	30.573	Equus_asinus_asinus
ENSSDUG00000006736	-	81	30.573	ENSECAG00000022522	YRDC	53	30.573	Equus_caballus
ENSSDUG00000006736	-	83	30.625	ENSFCAG00000011018	YRDC	54	30.061	Felis_catus
ENSSDUG00000006736	-	98	59.649	ENSFALG00000011333	-	60	59.649	Ficedula_albicollis
ENSSDUG00000006736	-	83	30.159	ENSFALG00000000964	YRDC	62	33.333	Ficedula_albicollis
ENSSDUG00000006736	-	79	30.719	ENSFHEG00000001029	yrdc	57	32.432	Fundulus_heteroclitus
ENSSDUG00000006736	-	75	32.000	ENSGMOG00000015635	yrdc	67	32.000	Gadus_morhua
ENSSDUG00000006736	-	90	38.164	ENSGMOG00000006012	-	83	38.462	Gadus_morhua
ENSSDUG00000006736	-	99	57.143	ENSGALG00000025899	-	77	57.143	Gallus_gallus
ENSSDUG00000006736	-	84	30.688	ENSGALG00000029001	YRDC	71	30.851	Gallus_gallus
ENSSDUG00000006736	-	90	39.423	ENSGALG00000054964	-	77	39.423	Gallus_gallus
ENSSDUG00000006736	-	77	32.000	ENSGAFG00000008396	yrdc	63	30.286	Gambusia_affinis
ENSSDUG00000006736	-	77	34.667	ENSGACG00000013878	yrdc	60	34.667	Gasterosteus_aculeatus
ENSSDUG00000006736	-	90	37.500	ENSGACG00000018246	-	77	37.500	Gasterosteus_aculeatus
ENSSDUG00000006736	-	61	61.806	ENSGACG00000018252	-	99	66.423	Gasterosteus_aculeatus
ENSSDUG00000006736	-	86	31.122	ENSGAGG00000014968	YRDC	81	31.122	Gopherus_agassizii
ENSSDUG00000006736	-	83	30.000	ENSGGOG00000007619	YRDC	54	30.000	Gorilla_gorilla
ENSSDUG00000006736	-	75	32.653	ENSHBUG00000009298	yrdc	52	33.333	Haplochromis_burtoni
ENSSDUG00000006736	-	81	31.875	ENSHGLG00000014075	YRDC	67	30.882	Heterocephalus_glaber_female
ENSSDUG00000006736	-	77	32.237	ENSHGLG00100002734	YRDC	54	31.288	Heterocephalus_glaber_male
ENSSDUG00000006736	-	79	32.468	ENSHCOG00000006598	yrdc	58	32.468	Hippocampus_comes
ENSSDUG00000006736	-	97	33.684	ENSIPUG00000014985	yrdc	75	33.684	Ictalurus_punctatus
ENSSDUG00000006736	-	90	31.214	ENSSTOG00000001643	YRDC	63	31.606	Ictidomys_tridecemlineatus
ENSSDUG00000006736	-	75	31.293	ENSKMAG00000013468	yrdc	52	31.293	Kryptolebias_marmoratus
ENSSDUG00000006736	-	75	36.054	ENSLBEG00000027501	yrdc	52	36.054	Labrus_bergylta
ENSSDUG00000006736	-	89	30.899	ENSLACG00000010689	YRDC	65	32.051	Latimeria_chalumnae
ENSSDUG00000006736	-	96	63.677	ENSLACG00000017624	si:ch211-153b23.3	69	63.677	Latimeria_chalumnae
ENSSDUG00000006736	-	74	31.944	ENSLOCG00000003321	yrdc	57	31.944	Lepisosteus_oculatus
ENSSDUG00000006736	-	92	30.114	ENSLAFG00000017556	YRDC	58	30.114	Loxodonta_africana
ENSSDUG00000006736	-	78	30.263	ENSMFAG00000003487	YRDC	68	30.323	Macaca_fascicularis
ENSSDUG00000006736	-	83	30.000	ENSMNEG00000029348	YRDC	54	30.000	Macaca_nemestrina
ENSSDUG00000006736	-	96	34.031	ENSMAMG00000007315	yrdc	68	34.031	Mastacembelus_armatus
ENSSDUG00000006736	-	75	34.014	ENSMZEG00005006948	yrdc	52	34.694	Maylandia_zebra
ENSSDUG00000006736	-	98	57.895	ENSMGAG00000005489	-	60	57.895	Meleagris_gallopavo
ENSSDUG00000006736	-	77	32.000	ENSMGAG00000002833	YRDC	69	32.000	Meleagris_gallopavo
ENSSDUG00000006736	-	63	30.882	ENSMICG00000031688	YRDC	67	30.392	Microcebus_murinus
ENSSDUG00000006736	-	80	30.769	ENSMOCG00000000164	-	67	31.461	Microtus_ochrogaster
ENSSDUG00000006736	-	75	36.054	ENSMMOG00000002119	yrdc	52	36.054	Mola_mola
ENSSDUG00000006736	-	77	30.000	ENSMODG00000017750	YRDC	50	30.000	Monodelphis_domestica
ENSSDUG00000006736	-	75	36.735	ENSMALG00000012471	yrdc	53	36.735	Monopterus_albus
ENSSDUG00000006736	-	90	31.818	MGP_CAROLIEiJ_G0026453	Yrdc	67	31.884	Mus_caroli
ENSSDUG00000006736	-	90	31.792	ENSMUSG00000028889	Yrdc	67	31.818	Mus_musculus
ENSSDUG00000006736	-	90	31.792	MGP_PahariEiJ_G0028784	Yrdc	67	31.343	Mus_pahari
ENSSDUG00000006736	-	90	31.792	MGP_SPRETEiJ_G0027432	Yrdc	82	33.155	Mus_spretus
ENSSDUG00000006736	-	84	30.247	ENSMPUG00000014542	YRDC	61	30.247	Mustela_putorius_furo
ENSSDUG00000006736	-	77	30.000	ENSMLUG00000000955	-	50	30.000	Myotis_lucifugus
ENSSDUG00000006736	-	90	30.636	ENSNGAG00000019099	Yrdc	57	30.636	Nannospalax_galili
ENSSDUG00000006736	-	75	31.973	ENSNBRG00000009475	yrdc	52	31.973	Neolamprologus_brichardi
ENSSDUG00000006736	-	83	30.000	ENSNLEG00000011665	YRDC	54	30.000	Nomascus_leucogenys
ENSSDUG00000006736	-	66	30.556	ENSMEUG00000005068	YRDC	63	30.556	Notamacropus_eugenii
ENSSDUG00000006736	-	81	32.484	ENSODEG00000007401	YRDC	67	30.882	Octodon_degus
ENSSDUG00000006736	-	75	31.973	ENSONIG00000016213	yrdc	58	32.653	Oreochromis_niloticus
ENSSDUG00000006736	-	62	49.655	ENSOANG00000030985	-	100	52.143	Ornithorhynchus_anatinus
ENSSDUG00000006736	-	75	33.553	ENSORLG00000014393	yrdc	52	33.553	Oryzias_latipes
ENSSDUG00000006736	-	75	33.553	ENSORLG00020019663	yrdc	52	33.553	Oryzias_latipes_hni
ENSSDUG00000006736	-	80	33.540	ENSORLG00015004625	yrdc	56	33.540	Oryzias_latipes_hsok
ENSSDUG00000006736	-	75	34.211	ENSOMEG00000018550	yrdc	53	34.211	Oryzias_melastigma
ENSSDUG00000006736	-	81	32.484	ENSOGAG00000030474	YRDC	54	32.667	Otolemur_garnettii
ENSSDUG00000006736	-	81	31.847	ENSOARG00000019873	YRDC	66	31.841	Ovis_aries
ENSSDUG00000006736	-	83	30.625	ENSPPRG00000007752	YRDC	54	30.061	Panthera_pardus
ENSSDUG00000006736	-	83	30.000	ENSPTRG00000000557	YRDC	54	30.000	Pan_troglodytes
ENSSDUG00000006736	-	77	35.333	ENSPKIG00000004574	yrdc	51	35.333	Paramormyrops_kingsleyae
ENSSDUG00000006736	-	78	33.113	ENSPSIG00000006483	YRDC	50	33.113	Pelodiscus_sinensis
ENSSDUG00000006736	-	75	36.054	ENSPMGG00000004184	yrdc	54	36.170	Periophthalmus_magnuspinnatus
ENSSDUG00000006736	-	65	30.496	ENSPMAG00000002905	yrdc	71	30.496	Petromyzon_marinus
ENSSDUG00000006736	-	62	30.000	ENSPCIG00000025731	YRDC	52	30.000	Phascolarctos_cinereus
ENSSDUG00000006736	-	77	33.113	ENSPFOG00000023097	yrdc	53	33.113	Poecilia_formosa
ENSSDUG00000006736	-	77	33.113	ENSPLAG00000020882	yrdc	53	33.113	Poecilia_latipinna
ENSSDUG00000006736	-	77	33.113	ENSPMEG00000013237	yrdc	53	33.113	Poecilia_mexicana
ENSSDUG00000006736	-	77	32.450	ENSPREG00000005285	yrdc	53	32.450	Poecilia_reticulata
ENSSDUG00000006736	-	69	30.000	ENSPPYG00000001523	-	62	30.000	Pongo_abelii
ENSSDUG00000006736	-	83	31.875	ENSPCAG00000016850	YRDC	65	30.303	Procavia_capensis
ENSSDUG00000006736	-	81	31.847	ENSPCOG00000013214	YRDC	67	31.343	Propithecus_coquereli
ENSSDUG00000006736	-	67	31.333	ENSPVAG00000010147	YRDC	53	31.333	Pteropus_vampyrus
ENSSDUG00000006736	-	75	31.973	ENSPNYG00000013956	yrdc	52	32.653	Pundamilia_nyererei
ENSSDUG00000006736	-	75	34.694	ENSPNAG00000015625	yrdc	57	34.694	Pygocentrus_nattereri
ENSSDUG00000006736	-	90	31.792	ENSRNOG00000025424	Yrdc	67	31.863	Rattus_norvegicus
ENSSDUG00000006736	-	83	30.000	ENSRBIG00000032289	YRDC	54	30.000	Rhinopithecus_bieti
ENSSDUG00000006736	-	66	30.147	ENSRROG00000039370	YRDC	51	30.000	Rhinopithecus_roxellana
ENSSDUG00000006736	-	68	30.573	ENSSBOG00000018937	YRDC	66	30.573	Saimiri_boliviensis_boliviensis
ENSSDUG00000006736	-	77	34.667	ENSSFOG00015006128	yrdc	61	34.667	Scleropages_formosus
ENSSDUG00000006736	-	77	34.667	ENSSMAG00000005195	yrdc	54	34.667	Scophthalmus_maximus
ENSSDUG00000006736	-	95	80.976	ENSSLDG00000008694	-	91	80.976	Seriola_lalandi_dorsalis
ENSSDUG00000006736	-	77	36.000	ENSSLDG00000003196	yrdc	53	36.667	Seriola_lalandi_dorsalis
ENSSDUG00000006736	-	77	30.872	ENSSPUG00000003946	YRDC	54	32.394	Sphenodon_punctatus
ENSSDUG00000006736	-	79	36.601	ENSSPAG00000012559	yrdc	54	36.601	Stegastes_partitus
ENSSDUG00000006736	-	81	31.210	ENSSSCG00000040425	YRDC	53	31.210	Sus_scrofa
ENSSDUG00000006736	-	77	34.868	ENSTRUG00000005923	yrdc	51	35.570	Takifugu_rubripes
ENSSDUG00000006736	-	78	30.921	ENSUAMG00000006150	YRDC	71	30.380	Ursus_americanus
ENSSDUG00000006736	-	84	30.526	ENSXETG00000014420	yrdc	76	30.526	Xenopus_tropicalis
ENSSDUG00000006736	-	77	30.323	ENSXCOG00000000829	yrdc	59	30.323	Xiphophorus_couchianus
ENSSDUG00000006736	-	77	30.667	ENSXMAG00000014606	yrdc	50	30.667	Xiphophorus_maculatus