EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000006840 (Gene tree)
Gene ID: 111230125
Gene Symbol: prpf3
Alias: HPRP3|wu:fa11f05
Full Name: pre-mRNA processing factor 3
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 5925 bases
Position: chrBDQW01000258.1:712369-718293
Accession: 111230125
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000009570	PRP3	PF08572.10	2.1e-58	1	2
ENSSDUP00000009570	PRP3	PF08572.10	2.1e-58	2	2
ENSSDUP00000009700	PRP3	PF08572.10	3e-55	1	2
ENSSDUP00000009700	PRP3	PF08572.10	3e-55	2	2
ENSSDUP00000009700	PWI	PF01480.17	1.6e-11	1	1
ENSSDUP00000009570	PWI	PF01480.17	2.4e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000009888	-	1908	-	ENSSDUP00000009700	635 (aa)	-	-
ENSSDUT00000009759	-	1941	XM_022756718	ENSSDUP00000009570	646 (aa)	XP_022612439	-

Gene Model

Click here to download ENSSDUG00000006840's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000006840's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000006840	prpf3	99	68.867	ENSG00000117360	PRPF3	100	68.867	Homo_sapiens
ENSSDUG00000006840	prpf3	100	86.838	ENSAPOG00000015584	prpf3	100	86.981	Acanthochromis_polyacanthus
ENSSDUG00000006840	prpf3	99	69.010	ENSAMEG00000001630	PRPF3	100	69.297	Ailuropoda_melanoleuca
ENSSDUG00000006840	prpf3	100	85.222	ENSACIG00000007876	prpf3	100	86.083	Amphilophus_citrinellus
ENSSDUG00000006840	prpf3	100	86.390	ENSAOCG00000011449	prpf3	100	87.106	Amphiprion_ocellaris
ENSSDUG00000006840	prpf3	100	89.580	ENSATEG00000023583	prpf3	100	88.958	Anabas_testudineus
ENSSDUG00000006840	prpf3	99	70.057	ENSAPLG00000002440	PRPF3	100	69.054	Anas_platyrhynchos
ENSSDUG00000006840	prpf3	99	69.900	ENSACAG00000003176	PRPF3	100	69.900	Anolis_carolinensis
ENSSDUG00000006840	prpf3	99	68.867	ENSANAG00000026138	PRPF3	100	68.867	Aotus_nancymaae
ENSSDUG00000006840	prpf3	100	86.172	ENSACLG00000020127	prpf3	100	85.444	Astatotilapia_calliptera
ENSSDUG00000006840	prpf3	100	79.073	ENSAMXG00000007306	prpf3	100	78.511	Astyanax_mexicanus
ENSSDUG00000006840	prpf3	99	68.867	ENSBTAG00000013946	PRPF3	100	68.867	Bos_taurus
ENSSDUG00000006840	prpf3	81	36.684	WBGene00010844	prp-3	95	34.043	Caenorhabditis_elegans
ENSSDUG00000006840	prpf3	99	68.867	ENSCJAG00000009926	PRPF3	100	68.867	Callithrix_jacchus
ENSSDUG00000006840	prpf3	99	68.867	ENSCAFG00000011820	PRPF3	100	68.867	Canis_familiaris
ENSSDUG00000006840	prpf3	80	68.036	ENSCAFG00020019653	PRPF3	99	67.679	Canis_lupus_dingo
ENSSDUG00000006840	prpf3	99	68.867	ENSCHIG00000015434	PRPF3	100	68.867	Capra_hircus
ENSSDUG00000006840	prpf3	99	69.010	ENSTSYG00000001383	PRPF3	100	69.010	Carlito_syrichta
ENSSDUG00000006840	prpf3	92	63.607	ENSCAPG00000017812	PRPF3	95	63.929	Cavia_aperea
ENSSDUG00000006840	prpf3	99	68.867	ENSCPOG00000008068	PRPF3	100	68.867	Cavia_porcellus
ENSSDUG00000006840	prpf3	99	68.867	ENSCCAG00000026380	PRPF3	100	68.867	Cebus_capucinus
ENSSDUG00000006840	prpf3	99	57.368	ENSCATG00000041778	PRPF3	100	57.368	Cercocebus_atys
ENSSDUG00000006840	prpf3	99	69.010	ENSCLAG00000015009	PRPF3	100	69.010	Chinchilla_lanigera
ENSSDUG00000006840	prpf3	79	82.422	ENSCHOG00000011645	PRPF3	73	82.422	Choloepus_hoffmanni
ENSSDUG00000006840	prpf3	99	69.484	ENSCPBG00000008216	PRPF3	100	69.484	Chrysemys_picta_bellii
ENSSDUG00000006840	prpf3	58	56.763	ENSCING00000003312	-	99	56.553	Ciona_intestinalis
ENSSDUG00000006840	prpf3	81	51.930	ENSCSAVG00000008720	-	94	52.909	Ciona_savignyi
ENSSDUG00000006840	prpf3	99	68.777	ENSCANG00000036769	PRPF3	100	68.777	Colobus_angolensis_palliatus
ENSSDUG00000006840	prpf3	99	68.867	ENSCGRG00001019100	Prpf3	100	68.867	Cricetulus_griseus_chok1gshd
ENSSDUG00000006840	prpf3	99	68.867	ENSCGRG00000007322	Prpf3	100	68.867	Cricetulus_griseus_crigri
ENSSDUG00000006840	prpf3	100	82.295	ENSCSEG00000002532	prpf3	100	82.153	Cynoglossus_semilaevis
ENSSDUG00000006840	prpf3	100	83.885	ENSCVAG00000009318	prpf3	100	83.597	Cyprinodon_variegatus
ENSSDUG00000006840	prpf3	100	77.952	ENSDARG00000086425	prpf3	100	79.286	Danio_rerio
ENSSDUG00000006840	prpf3	99	64.203	ENSDNOG00000005904	PRPF3	100	65.086	Dasypus_novemcinctus
ENSSDUG00000006840	prpf3	92	68.673	ENSDORG00000008664	Prpf3	100	68.673	Dipodomys_ordii
ENSSDUG00000006840	prpf3	78	50.180	FBgn0036915	Prp3	99	50.275	Drosophila_melanogaster
ENSSDUG00000006840	prpf3	99	69.154	ENSETEG00000019124	PRPF3	100	69.297	Echinops_telfairi
ENSSDUG00000006840	prpf3	100	58.658	ENSEBUG00000011680	prpf3	100	58.602	Eptatretus_burgeri
ENSSDUG00000006840	prpf3	99	68.723	ENSEASG00005001566	PRPF3	100	69.010	Equus_asinus_asinus
ENSSDUG00000006840	prpf3	99	68.867	ENSECAG00000019840	PRPF3	100	68.867	Equus_caballus
ENSSDUG00000006840	prpf3	85	69.704	ENSEEUG00000007338	PRPF3	85	70.159	Erinaceus_europaeus
ENSSDUG00000006840	prpf3	100	74.927	ENSELUG00000013624	prpf3	100	74.487	Esox_lucius
ENSSDUG00000006840	prpf3	99	68.867	ENSFCAG00000013940	PRPF3	100	68.867	Felis_catus
ENSSDUG00000006840	prpf3	99	69.297	ENSFDAG00000010365	PRPF3	100	69.297	Fukomys_damarensis
ENSSDUG00000006840	prpf3	100	82.565	ENSFHEG00000021746	prpf3	100	82.133	Fundulus_heteroclitus
ENSSDUG00000006840	prpf3	100	80.114	ENSGMOG00000008535	prpf3	100	79.659	Gadus_morhua
ENSSDUG00000006840	prpf3	99	70.201	ENSGALG00000028205	PRPF3	100	69.198	Gallus_gallus
ENSSDUG00000006840	prpf3	100	82.583	ENSGAFG00000012671	prpf3	100	82.583	Gambusia_affinis
ENSSDUG00000006840	prpf3	100	83.476	ENSGACG00000011792	prpf3	100	82.764	Gasterosteus_aculeatus
ENSSDUG00000006840	prpf3	99	69.484	ENSGAGG00000013765	PRPF3	100	72.252	Gopherus_agassizii
ENSSDUG00000006840	prpf3	84	72.189	ENSGGOG00000013174	PRPF3	100	72.781	Gorilla_gorilla
ENSSDUG00000006840	prpf3	100	86.003	ENSHBUG00000003493	prpf3	100	85.281	Haplochromis_burtoni
ENSSDUG00000006840	prpf3	99	54.740	ENSHGLG00000016033	-	100	54.361	Heterocephalus_glaber_female
ENSSDUG00000006840	prpf3	99	69.010	ENSHGLG00000016569	PRPF3	100	69.297	Heterocephalus_glaber_female
ENSSDUG00000006840	prpf3	99	54.954	ENSHGLG00100008951	-	100	54.969	Heterocephalus_glaber_male
ENSSDUG00000006840	prpf3	99	69.010	ENSHGLG00100007590	PRPF3	100	69.297	Heterocephalus_glaber_male
ENSSDUG00000006840	prpf3	100	77.825	ENSHCOG00000014058	prpf3	100	77.396	Hippocampus_comes
ENSSDUG00000006840	prpf3	100	78.917	ENSIPUG00000000902	PRPF3	100	79.345	Ictalurus_punctatus
ENSSDUG00000006840	prpf3	99	68.867	ENSSTOG00000001889	PRPF3	100	68.867	Ictidomys_tridecemlineatus
ENSSDUG00000006840	prpf3	100	83.811	ENSKMAG00000001390	prpf3	100	84.097	Kryptolebias_marmoratus
ENSSDUG00000006840	prpf3	92	96.739	ENSLBEG00000026310	prpf3	100	87.179	Labrus_bergylta
ENSSDUG00000006840	prpf3	92	65.948	ENSLACG00000010541	PRPF3	100	66.102	Latimeria_chalumnae
ENSSDUG00000006840	prpf3	99	68.867	ENSLAFG00000004713	PRPF3	100	68.867	Loxodonta_africana
ENSSDUG00000006840	prpf3	99	68.867	ENSMFAG00000039791	PRPF3	100	68.867	Macaca_fascicularis
ENSSDUG00000006840	prpf3	90	68.998	ENSMMUG00000016301	PRPF3	98	68.680	Macaca_mulatta
ENSSDUG00000006840	prpf3	99	68.867	ENSMNEG00000038161	PRPF3	100	68.867	Macaca_nemestrina
ENSSDUG00000006840	prpf3	84	72.189	ENSMLEG00000040609	PRPF3	100	72.781	Mandrillus_leucophaeus
ENSSDUG00000006840	prpf3	98	47.704	ENSMLEG00000041065	-	97	46.954	Mandrillus_leucophaeus
ENSSDUG00000006840	prpf3	100	86.610	ENSMAMG00000014968	prpf3	100	85.897	Mastacembelus_armatus
ENSSDUG00000006840	prpf3	100	85.349	ENSMZEG00005015970	prpf3	100	85.206	Maylandia_zebra
ENSSDUG00000006840	prpf3	99	70.201	ENSMGAG00000000707	PRPF3	100	69.198	Meleagris_gallopavo
ENSSDUG00000006840	prpf3	99	68.723	ENSMAUG00000017112	Prpf3	100	68.580	Mesocricetus_auratus
ENSSDUG00000006840	prpf3	99	68.723	ENSMICG00000015386	PRPF3	100	71.841	Microcebus_murinus
ENSSDUG00000006840	prpf3	99	68.867	ENSMOCG00000000242	Prpf3	100	68.867	Microtus_ochrogaster
ENSSDUG00000006840	prpf3	100	78.818	ENSMMOG00000016131	prpf3	100	79.429	Mola_mola
ENSSDUG00000006840	prpf3	99	69.154	ENSMODG00000018774	PRPF3	100	69.154	Monodelphis_domestica
ENSSDUG00000006840	prpf3	100	84.058	ENSMALG00000007257	prpf3	100	84.615	Monopterus_albus
ENSSDUG00000006840	prpf3	99	68.867	MGP_CAROLIEiJ_G0025354	Prpf3	100	68.867	Mus_caroli
ENSSDUG00000006840	prpf3	99	68.867	ENSMUSG00000015748	Prpf3	100	68.867	Mus_musculus
ENSSDUG00000006840	prpf3	99	68.966	MGP_PahariEiJ_G0026798	Prpf3	100	68.966	Mus_pahari
ENSSDUG00000006840	prpf3	99	68.867	MGP_SPRETEiJ_G0026298	Prpf3	100	68.867	Mus_spretus
ENSSDUG00000006840	prpf3	99	68.723	ENSMPUG00000005080	PRPF3	100	68.723	Mustela_putorius_furo
ENSSDUG00000006840	prpf3	99	69.198	ENSMLUG00000004646	-	100	69.484	Myotis_lucifugus
ENSSDUG00000006840	prpf3	99	68.867	ENSNGAG00000000910	Prpf3	100	68.867	Nannospalax_galili
ENSSDUG00000006840	prpf3	100	84.388	ENSNBRG00000003462	prpf3	100	84.107	Neolamprologus_brichardi
ENSSDUG00000006840	prpf3	89	69.342	ENSNLEG00000009841	PRPF3	99	69.021	Nomascus_leucogenys
ENSSDUG00000006840	prpf3	74	79.227	ENSMEUG00000008733	PRPF3	77	77.778	Notamacropus_eugenii
ENSSDUG00000006840	prpf3	99	68.723	ENSOPRG00000010139	PRPF3	100	68.723	Ochotona_princeps
ENSSDUG00000006840	prpf3	99	52.224	ENSODEG00000014412	-	100	52.511	Octodon_degus
ENSSDUG00000006840	prpf3	99	69.010	ENSODEG00000011363	-	100	69.010	Octodon_degus
ENSSDUG00000006840	prpf3	100	85.633	ENSONIG00000006394	prpf3	100	85.491	Oreochromis_niloticus
ENSSDUG00000006840	prpf3	99	53.957	ENSOANG00000015441	PRPF3	100	53.957	Ornithorhynchus_anatinus
ENSSDUG00000006840	prpf3	99	68.867	ENSOCUG00000011760	PRPF3	100	68.867	Oryctolagus_cuniculus
ENSSDUG00000006840	prpf3	100	83.405	ENSORLG00000010330	prpf3	100	83.261	Oryzias_latipes
ENSSDUG00000006840	prpf3	100	83.405	ENSORLG00020009054	prpf3	100	83.261	Oryzias_latipes_hni
ENSSDUG00000006840	prpf3	100	83.117	ENSORLG00015015016	prpf3	100	82.973	Oryzias_latipes_hsok
ENSSDUG00000006840	prpf3	100	83.718	ENSOMEG00000000940	prpf3	100	83.429	Oryzias_melastigma
ENSSDUG00000006840	prpf3	99	65.280	ENSOGAG00000005352	PRPF3	100	65.280	Otolemur_garnettii
ENSSDUG00000006840	prpf3	99	68.867	ENSOARG00000020798	PRPF3	100	68.867	Ovis_aries
ENSSDUG00000006840	prpf3	98	51.820	ENSPPAG00000043769	-	99	52.256	Pan_paniscus
ENSSDUG00000006840	prpf3	99	68.723	ENSPPAG00000030983	PRPF3	100	68.723	Pan_paniscus
ENSSDUG00000006840	prpf3	99	68.867	ENSPPRG00000000731	PRPF3	100	68.867	Panthera_pardus
ENSSDUG00000006840	prpf3	99	68.867	ENSPTIG00000005516	PRPF3	100	68.867	Panthera_tigris_altaica
ENSSDUG00000006840	prpf3	98	51.092	ENSPTRG00000047819	-	99	51.383	Pan_troglodytes
ENSSDUG00000006840	prpf3	99	68.867	ENSPTRG00000001254	PRPF3	100	68.867	Pan_troglodytes
ENSSDUG00000006840	prpf3	99	68.723	ENSPANG00000000499	PRPF3	100	68.723	Papio_anubis
ENSSDUG00000006840	prpf3	100	79.688	ENSPKIG00000010501	prpf3	100	79.119	Paramormyrops_kingsleyae
ENSSDUG00000006840	prpf3	99	69.814	ENSPSIG00000014877	PRPF3	100	69.528	Pelodiscus_sinensis
ENSSDUG00000006840	prpf3	100	74.161	ENSPMGG00000007776	prpf3	100	74.307	Periophthalmus_magnuspinnatus
ENSSDUG00000006840	prpf3	99	68.867	ENSPEMG00000011672	Prpf3	100	68.867	Peromyscus_maniculatus_bairdii
ENSSDUG00000006840	prpf3	61	68.650	ENSPMAG00000005588	prpf3	97	68.650	Petromyzon_marinus
ENSSDUG00000006840	prpf3	99	69.154	ENSPCIG00000008795	PRPF3	100	69.154	Phascolarctos_cinereus
ENSSDUG00000006840	prpf3	100	81.481	ENSPFOG00000013638	prpf3	100	82.051	Poecilia_formosa
ENSSDUG00000006840	prpf3	100	82.684	ENSPLAG00000018103	prpf3	100	83.357	Poecilia_latipinna
ENSSDUG00000006840	prpf3	100	82.828	ENSPMEG00000023546	prpf3	100	83.502	Poecilia_mexicana
ENSSDUG00000006840	prpf3	100	82.344	ENSPREG00000017216	prpf3	100	82.923	Poecilia_reticulata
ENSSDUG00000006840	prpf3	92	67.643	ENSPPYG00000000900	PRPF3	99	67.643	Pongo_abelii
ENSSDUG00000006840	prpf3	75	59.506	ENSPPYG00000018646	-	99	58.745	Pongo_abelii
ENSSDUG00000006840	prpf3	86	69.917	ENSPCAG00000014908	PRPF3	87	69.917	Procavia_capensis
ENSSDUG00000006840	prpf3	99	68.723	ENSPCOG00000013828	PRPF3	100	68.723	Propithecus_coquereli
ENSSDUG00000006840	prpf3	99	68.534	ENSPVAG00000013472	PRPF3	100	68.534	Pteropus_vampyrus
ENSSDUG00000006840	prpf3	100	85.859	ENSPNYG00000004279	prpf3	100	85.137	Pundamilia_nyererei
ENSSDUG00000006840	prpf3	100	78.511	ENSPNAG00000001799	prpf3	100	78.371	Pygocentrus_nattereri
ENSSDUG00000006840	prpf3	99	69.010	ENSRNOG00000025629	Prpf3	100	69.010	Rattus_norvegicus
ENSSDUG00000006840	prpf3	80	73.050	ENSRBIG00000028854	PRPF3	88	74.265	Rhinopithecus_bieti
ENSSDUG00000006840	prpf3	99	68.867	ENSRROG00000027464	PRPF3	100	68.867	Rhinopithecus_roxellana
ENSSDUG00000006840	prpf3	99	66.412	ENSSBOG00000033104	PRPF3	100	66.317	Saimiri_boliviensis_boliviensis
ENSSDUG00000006840	prpf3	99	68.768	ENSSHAG00000009548	PRPF3	100	68.768	Sarcophilus_harrisii
ENSSDUG00000006840	prpf3	100	78.151	ENSSFOG00015022014	prpf3	100	78.011	Scleropages_formosus
ENSSDUG00000006840	prpf3	100	85.070	ENSSMAG00000015739	prpf3	100	84.930	Scophthalmus_maximus
ENSSDUG00000006840	prpf3	100	95.931	ENSSLDG00000015423	prpf3	100	95.931	Seriola_lalandi_dorsalis
ENSSDUG00000006840	prpf3	99	68.867	ENSSARG00000011064	PRPF3	100	69.154	Sorex_araneus
ENSSDUG00000006840	prpf3	99	69.209	ENSSPUG00000000809	PRPF3	100	68.927	Sphenodon_punctatus
ENSSDUG00000006840	prpf3	100	87.447	ENSSPAG00000018721	prpf3	100	88.588	Stegastes_partitus
ENSSDUG00000006840	prpf3	99	68.867	ENSSSCG00000030119	PRPF3	100	72.022	Sus_scrofa
ENSSDUG00000006840	prpf3	93	79.808	ENSTGUG00000004552	PRPF3	88	80.769	Taeniopygia_guttata
ENSSDUG00000006840	prpf3	100	81.341	ENSTRUG00000014923	prpf3	100	81.341	Takifugu_rubripes
ENSSDUG00000006840	prpf3	99	81.081	ENSTNIG00000008058	prpf3	100	80.085	Tetraodon_nigroviridis
ENSSDUG00000006840	prpf3	81	68.721	ENSTBEG00000014072	PRPF3	87	70.320	Tupaia_belangeri
ENSSDUG00000006840	prpf3	99	64.080	ENSTTRG00000010616	PRPF3	100	64.080	Tursiops_truncatus
ENSSDUG00000006840	prpf3	78	71.661	ENSUAMG00000009345	PRPF3	100	72.022	Ursus_americanus
ENSSDUG00000006840	prpf3	99	68.867	ENSUMAG00000003720	PRPF3	100	68.867	Ursus_maritimus
ENSSDUG00000006840	prpf3	89	73.182	ENSVPAG00000005425	PRPF3	89	74.091	Vicugna_pacos
ENSSDUG00000006840	prpf3	99	68.867	ENSVVUG00000007933	PRPF3	100	68.867	Vulpes_vulpes
ENSSDUG00000006840	prpf3	99	67.806	ENSXETG00000018654	prpf3	100	67.379	Xenopus_tropicalis
ENSSDUG00000006840	prpf3	100	82.828	ENSXMAG00000016347	prpf3	100	83.502	Xiphophorus_maculatus