EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000006842 (Gene tree)
Gene ID: -
Gene Symbol: si:ch211-153b23.4 (1 of many)
Alias: fj08f03|fj10b02|im:7041150|wu:fj08f03|wu:fj10b02
Full Name: si:ch211-153b23.4
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 5183 bases
Position: chrBDQW01000161.1:763118-768300
Accession: ZDB-GENE-030131-7332
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000009421	Sua5_yciO_yrdC	PF01300.18	4.5e-28	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000009607	-	2250	-	ENSSDUP00000009421	749 (aa)	-	-

Gene Model

Click here to download ENSSDUG00000006842's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000006842's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000006842	si:ch211-153b23.4	74	86.029	ENSSDUG00000006931	si:ch211-153b23.4	80	86.029
ENSSDUG00000006842	si:ch211-153b23.4	91	91.321	ENSSDUG00000006671	si:ch211-153b23.4	88	91.321

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000006842	si:ch211-153b23.4	93	83.974	ENSAPOG00000006178	si:ch211-153b23.4	85	83.974	Acanthochromis_polyacanthus
ENSSDUG00000006842	si:ch211-153b23.4	95	83.871	ENSAPOG00000006144	si:ch211-153b23.4	85	83.871	Acanthochromis_polyacanthus
ENSSDUG00000006842	si:ch211-153b23.4	91	82.895	ENSACIG00000006997	si:ch211-153b23.4	84	82.895	Amphilophus_citrinellus
ENSSDUG00000006842	si:ch211-153b23.4	96	59.097	ENSAOCG00000010999	si:ch211-153b23.4	99	59.097	Amphiprion_ocellaris
ENSSDUG00000006842	si:ch211-153b23.4	97	84.244	ENSAPEG00000014665	si:ch211-153b23.4	90	84.244	Amphiprion_percula
ENSSDUG00000006842	si:ch211-153b23.4	97	84.615	ENSATEG00000004948	si:ch211-153b23.4	87	84.615	Anabas_testudineus
ENSSDUG00000006842	si:ch211-153b23.4	84	70.703	ENSAPLG00000013596	-	81	70.703	Anas_platyrhynchos
ENSSDUG00000006842	si:ch211-153b23.4	93	79.487	ENSACLG00000005471	si:ch211-153b23.4	86	79.487	Astatotilapia_calliptera
ENSSDUG00000006842	si:ch211-153b23.4	92	70.667	ENSAMXG00000013879	si:ch211-153b23.4	85	70.667	Astyanax_mexicanus
ENSSDUG00000006842	si:ch211-153b23.4	93	81.071	ENSCSEG00000014838	si:ch211-153b23.4	87	81.071	Cynoglossus_semilaevis
ENSSDUG00000006842	si:ch211-153b23.4	88	81.887	ENSCVAG00000021145	si:ch211-153b23.4	86	83.774	Cyprinodon_variegatus
ENSSDUG00000006842	si:ch211-153b23.4	97	49.519	ENSDARG00000077169	si:ch211-153b23.4	81	71.626	Danio_rerio
ENSSDUG00000006842	si:ch211-153b23.4	90	74.048	ENSELUG00000004961	si:ch211-153b23.4	80	74.048	Esox_lucius
ENSSDUG00000006842	si:ch211-153b23.4	86	69.582	ENSFALG00000011343	-	79	69.582	Ficedula_albicollis
ENSSDUG00000006842	si:ch211-153b23.4	87	80.658	ENSFHEG00000009888	si:ch211-153b23.4	75	80.658	Fundulus_heteroclitus
ENSSDUG00000006842	si:ch211-153b23.4	87	80.469	ENSFHEG00000010001	si:ch211-153b23.4	86	82.101	Fundulus_heteroclitus
ENSSDUG00000006842	si:ch211-153b23.4	84	81.991	ENSGAFG00000007442	si:ch211-153b23.4	79	81.991	Gambusia_affinis
ENSSDUG00000006842	si:ch211-153b23.4	93	82.979	ENSGACG00000018253	si:ch211-153b23.4	86	82.979	Gasterosteus_aculeatus
ENSSDUG00000006842	si:ch211-153b23.4	74	72.901	ENSGAGG00000024601	-	79	72.901	Gopherus_agassizii
ENSSDUG00000006842	si:ch211-153b23.4	72	83.408	ENSHBUG00000000013	si:ch211-153b23.4	77	83.408	Haplochromis_burtoni
ENSSDUG00000006842	si:ch211-153b23.4	88	71.218	ENSIPUG00000015205	si:ch211-153b23.4	82	71.218	Ictalurus_punctatus
ENSSDUG00000006842	si:ch211-153b23.4	94	79.487	ENSKMAG00000006919	-	84	79.808	Kryptolebias_marmoratus
ENSSDUG00000006842	si:ch211-153b23.4	86	85.317	ENSKMAG00000006829	si:ch211-153b23.4	84	85.714	Kryptolebias_marmoratus
ENSSDUG00000006842	si:ch211-153b23.4	93	81.090	ENSLBEG00000026309	si:ch211-153b23.4	84	81.090	Labrus_bergylta
ENSSDUG00000006842	si:ch211-153b23.4	84	74.340	ENSLACG00000017592	si:ch211-153b23.4	82	74.340	Latimeria_chalumnae
ENSSDUG00000006842	si:ch211-153b23.4	89	85.512	ENSMAMG00000009277	si:ch211-153b23.4	85	85.512	Mastacembelus_armatus
ENSSDUG00000006842	si:ch211-153b23.4	88	86.131	ENSMAMG00000009358	si:ch211-153b23.4	85	86.131	Mastacembelus_armatus
ENSSDUG00000006842	si:ch211-153b23.4	88	82.310	ENSMZEG00005011433	si:ch211-153b23.4	85	82.310	Maylandia_zebra
ENSSDUG00000006842	si:ch211-153b23.4	85	71.373	ENSMGAG00000005478	-	82	71.373	Meleagris_gallopavo
ENSSDUG00000006842	si:ch211-153b23.4	94	60.124	ENSMMOG00000004425	si:ch211-153b23.4	99	60.000	Mola_mola
ENSSDUG00000006842	si:ch211-153b23.4	85	82.609	ENSNBRG00000013392	si:ch211-153b23.4	84	82.609	Neolamprologus_brichardi
ENSSDUG00000006842	si:ch211-153b23.4	97	78.846	ENSONIG00000017875	si:ch211-153b23.4	87	78.846	Oreochromis_niloticus
ENSSDUG00000006842	si:ch211-153b23.4	97	79.355	ENSORLG00000006169	si:ch211-153b23.4	87	79.677	Oryzias_latipes
ENSSDUG00000006842	si:ch211-153b23.4	97	79.032	ENSORLG00020009905	si:ch211-153b23.4	87	79.355	Oryzias_latipes_hni
ENSSDUG00000006842	si:ch211-153b23.4	97	79.032	ENSORLG00015003709	si:ch211-153b23.4	87	79.355	Oryzias_latipes_hsok
ENSSDUG00000006842	si:ch211-153b23.4	97	58.041	ENSOMEG00000007682	si:ch211-153b23.4	95	58.343	Oryzias_melastigma
ENSSDUG00000006842	si:ch211-153b23.4	94	49.755	ENSPKIG00000014429	si:ch211-153b23.4	96	49.755	Paramormyrops_kingsleyae
ENSSDUG00000006842	si:ch211-153b23.4	89	74.306	ENSPKIG00000025681	si:ch211-153b23.4	82	74.306	Paramormyrops_kingsleyae
ENSSDUG00000006842	si:ch211-153b23.4	87	80.405	ENSPMGG00000001313	si:ch211-153b23.4	73	80.405	Periophthalmus_magnuspinnatus
ENSSDUG00000006842	si:ch211-153b23.4	70	82.331	ENSPFOG00000012164	si:ch211-153b23.4	79	84.211	Poecilia_formosa
ENSSDUG00000006842	si:ch211-153b23.4	93	57.410	ENSPLAG00000016295	si:ch211-153b23.4	99	58.032	Poecilia_latipinna
ENSSDUG00000006842	si:ch211-153b23.4	91	56.599	ENSPMEG00000007538	si:ch211-153b23.4	95	56.527	Poecilia_mexicana
ENSSDUG00000006842	si:ch211-153b23.4	88	82.310	ENSPNYG00000000250	si:ch211-153b23.4	85	82.310	Pundamilia_nyererei
ENSSDUG00000006842	si:ch211-153b23.4	91	72.333	ENSPNAG00000019554	si:ch211-153b23.4	82	72.333	Pygocentrus_nattereri
ENSSDUG00000006842	si:ch211-153b23.4	92	70.627	ENSSFOG00015010891	si:ch211-153b23.4	83	70.627	Scleropages_formosus
ENSSDUG00000006842	si:ch211-153b23.4	99	47.271	ENSSFOG00015003920	-	96	47.271	Scleropages_formosus
ENSSDUG00000006842	si:ch211-153b23.4	97	79.167	ENSSMAG00000010067	si:ch211-153b23.4	87	79.167	Scophthalmus_maximus
ENSSDUG00000006842	si:ch211-153b23.4	85	69.412	ENSTGUG00000005499	-	83	69.412	Taeniopygia_guttata
ENSSDUG00000006842	si:ch211-153b23.4	94	59.232	ENSTRUG00000003247	si:ch211-153b23.4	99	59.108	Takifugu_rubripes
ENSSDUG00000006842	si:ch211-153b23.4	91	82.331	ENSTNIG00000008958	si:ch211-153b23.4	86	82.331	Tetraodon_nigroviridis
ENSSDUG00000006842	si:ch211-153b23.4	93	41.768	ENSXETG00000004489	-	85	41.244	Xenopus_tropicalis
ENSSDUG00000006842	si:ch211-153b23.4	94	75.641	ENSXMAG00000009416	-	87	77.244	Xiphophorus_maculatus
ENSSDUG00000006842	si:ch211-153b23.4	92	81.919	ENSXMAG00000021388	si:ch211-153b23.4	87	83.764	Xiphophorus_maculatus