EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000006986 (Gene tree)
Gene ID: 111238407
Gene Symbol: PABPN1L
Alias: ePABP2
Full Name: poly(A) binding protein nuclear 1 like%2C cytoplasmic
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 5609 bases
Position: chrBDQW01001299.1:2076531-2082139
Accession: 111238407
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000009503	RRM_1	PF00076.22	1.5e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000009690	PABPN1L-201	3509	XM_022767885	ENSSDUP00000009503	263 (aa)	XP_022623606	UPI000BBEF546

Gene Model

Click here to download ENSSDUG00000006986's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000006986's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000006986	PABPN1L	75	54.762	ENSSDUG00000020582	pabpn1	52	60.784

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000006986	PABPN1L	71	51.244	ENSG00000205022	PABPN1L	58	53.988	Homo_sapiens
ENSSDUG00000006986	PABPN1L	91	95.000	ENSAPOG00000000685	PABPN1L	78	92.917	Acanthochromis_polyacanthus
ENSSDUG00000006986	PABPN1L	91	89.121	ENSACIG00000021400	PABPN1L	98	87.029	Amphilophus_citrinellus
ENSSDUG00000006986	PABPN1L	100	96.958	ENSAOCG00000019844	PABPN1L	100	96.958	Amphiprion_ocellaris
ENSSDUG00000006986	PABPN1L	100	96.578	ENSAPEG00000019534	PABPN1L	100	96.578	Amphiprion_percula
ENSSDUG00000006986	PABPN1L	91	94.561	ENSATEG00000011646	PABPN1L	95	95.397	Anabas_testudineus
ENSSDUG00000006986	PABPN1L	66	56.000	ENSACAG00000013250	PABPN1L	74	58.621	Anolis_carolinensis
ENSSDUG00000006986	PABPN1L	76	51.232	ENSANAG00000038178	PABPN1L	61	53.254	Aotus_nancymaae
ENSSDUG00000006986	PABPN1L	100	91.255	ENSACLG00000025147	PABPN1L	100	92.395	Astatotilapia_calliptera
ENSSDUG00000006986	PABPN1L	55	70.345	ENSAMXG00000010873	PABPN1L	55	70.345	Astyanax_mexicanus
ENSSDUG00000006986	PABPN1L	71	52.764	ENSCJAG00000045284	PABPN1L	60	51.534	Callithrix_jacchus
ENSSDUG00000006986	PABPN1L	76	52.657	ENSCCAG00000027631	PABPN1L	58	53.939	Cebus_capucinus
ENSSDUG00000006986	PABPN1L	71	51.961	ENSCATG00000031060	PABPN1L	59	53.374	Cercocebus_atys
ENSSDUG00000006986	PABPN1L	58	49.689	ENSCLAG00000000704	PABPN1L	63	46.286	Chinchilla_lanigera
ENSSDUG00000006986	PABPN1L	72	47.549	ENSCGRG00001013211	Pabpn1l	64	47.159	Cricetulus_griseus_chok1gshd
ENSSDUG00000006986	PABPN1L	72	47.549	ENSCGRG00000015868	Pabpn1l	64	47.159	Cricetulus_griseus_crigri
ENSSDUG00000006986	PABPN1L	100	86.742	ENSCSEG00000001142	pabpn1l	100	86.742	Cynoglossus_semilaevis
ENSSDUG00000006986	PABPN1L	100	90.875	ENSCVAG00000015547	PABPN1L	100	90.875	Cyprinodon_variegatus
ENSSDUG00000006986	PABPN1L	69	50.549	ENSDNOG00000034677	PABPN1L	57	52.632	Dasypus_novemcinctus
ENSSDUG00000006986	PABPN1L	73	48.000	ENSEASG00005000777	PABPN1L	61	50.000	Equus_asinus_asinus
ENSSDUG00000006986	PABPN1L	96	67.323	ENSELUG00000018385	PABPN1L	99	62.214	Esox_lucius
ENSSDUG00000006986	PABPN1L	63	52.047	ENSFCAG00000010465	PABPN1L	59	50.909	Felis_catus
ENSSDUG00000006986	PABPN1L	61	59.627	ENSFALG00000003319	PABPN1L	60	54.902	Ficedula_albicollis
ENSSDUG00000006986	PABPN1L	58	54.088	ENSFDAG00000021067	PABPN1L	60	49.693	Fukomys_damarensis
ENSSDUG00000006986	PABPN1L	100	88.593	ENSFHEG00000018295	PABPN1L	100	88.973	Fundulus_heteroclitus
ENSSDUG00000006986	PABPN1L	100	75.281	ENSGMOG00000001475	PABPN1L	100	73.783	Gadus_morhua
ENSSDUG00000006986	PABPN1L	55	60.135	ENSGALG00000006242	PABPN1L	63	63.063	Gallus_gallus
ENSSDUG00000006986	PABPN1L	100	90.494	ENSGAFG00000012565	PABPN1L	100	90.494	Gambusia_affinis
ENSSDUG00000006986	PABPN1L	100	86.517	ENSGACG00000015428	PABPN1L	100	86.517	Gasterosteus_aculeatus
ENSSDUG00000006986	PABPN1L	71	51.456	ENSGGOG00000012670	PABPN1L	59	53.892	Gorilla_gorilla
ENSSDUG00000006986	PABPN1L	100	92.015	ENSHBUG00000002388	PABPN1L	100	92.776	Haplochromis_burtoni
ENSSDUG00000006986	PABPN1L	100	85.821	ENSHCOG00000004151	PABPN1L	99	86.194	Hippocampus_comes
ENSSDUG00000006986	PABPN1L	67	64.088	ENSIPUG00000023583	PABPN1L	73	68.874	Ictalurus_punctatus
ENSSDUG00000006986	PABPN1L	73	47.396	ENSJJAG00000006433	Pabpn1l	63	47.674	Jaculus_jaculus
ENSSDUG00000006986	PABPN1L	82	91.163	ENSKMAG00000001112	PABPN1L	94	92.019	Kryptolebias_marmoratus
ENSSDUG00000006986	PABPN1L	100	88.679	ENSLBEG00000011647	PABPN1L	97	90.943	Labrus_bergylta
ENSSDUG00000006986	PABPN1L	71	51.456	ENSMFAG00000002924	PABPN1L	59	53.892	Macaca_fascicularis
ENSSDUG00000006986	PABPN1L	71	52.657	ENSMMUG00000012438	PABPN1L	59	53.614	Macaca_mulatta
ENSSDUG00000006986	PABPN1L	71	52.174	ENSMNEG00000044808	PABPN1L	59	53.892	Macaca_nemestrina
ENSSDUG00000006986	PABPN1L	71	51.923	ENSMLEG00000032667	PABPN1L	59	53.892	Mandrillus_leucophaeus
ENSSDUG00000006986	PABPN1L	100	91.255	ENSMZEG00005002186	PABPN1L	100	92.395	Maylandia_zebra
ENSSDUG00000006986	PABPN1L	75	47.030	ENSMICG00000028179	PABPN1L	59	49.693	Microcebus_murinus
ENSSDUG00000006986	PABPN1L	75	94.949	ENSMMOG00000017714	PABPN1L	86	94.949	Mola_mola
ENSSDUG00000006986	PABPN1L	100	90.114	ENSMALG00000016926	PABPN1L	100	90.875	Monopterus_albus
ENSSDUG00000006986	PABPN1L	68	45.146	MGP_CAROLIEiJ_G0031670	Pabpn1l	59	47.531	Mus_caroli
ENSSDUG00000006986	PABPN1L	76	46.445	ENSMUSG00000069867	Pabpn1l	59	48.148	Mus_musculus
ENSSDUG00000006986	PABPN1L	76	43.868	ENSNGAG00000023992	Pabpn1l	64	46.286	Nannospalax_galili
ENSSDUG00000006986	PABPN1L	90	92.017	ENSNBRG00000017078	PABPN1L	100	93.277	Neolamprologus_brichardi
ENSSDUG00000006986	PABPN1L	71	49.505	ENSOPRG00000005597	PABPN1L	61	50.595	Ochotona_princeps
ENSSDUG00000006986	PABPN1L	100	83.270	ENSORLG00000026560	PABPN1L	100	83.270	Oryzias_latipes
ENSSDUG00000006986	PABPN1L	100	82.890	ENSORLG00020015068	PABPN1L	100	82.890	Oryzias_latipes_hni
ENSSDUG00000006986	PABPN1L	100	83.270	ENSORLG00015000397	PABPN1L	100	83.270	Oryzias_latipes_hsok
ENSSDUG00000006986	PABPN1L	100	80.608	ENSOMEG00000017896	PABPN1L	72	80.608	Oryzias_melastigma
ENSSDUG00000006986	PABPN1L	71	50.500	ENSPPAG00000028866	PABPN1L	58	53.704	Pan_paniscus
ENSSDUG00000006986	PABPN1L	63	52.047	ENSPPRG00000015106	PABPN1L	59	50.909	Panthera_pardus
ENSSDUG00000006986	PABPN1L	63	51.515	ENSPTIG00000015606	PABPN1L	61	49.686	Panthera_tigris_altaica
ENSSDUG00000006986	PABPN1L	71	50.500	ENSPTRG00000031120	PABPN1L	58	53.704	Pan_troglodytes
ENSSDUG00000006986	PABPN1L	71	51.442	ENSPANG00000026039	PABPN1L	59	53.614	Papio_anubis
ENSSDUG00000006986	PABPN1L	61	62.733	ENSPSIG00000003404	PABPN1L	76	57.419	Pelodiscus_sinensis
ENSSDUG00000006986	PABPN1L	81	86.854	ENSPMGG00000013927	PABPN1L	94	86.854	Periophthalmus_magnuspinnatus
ENSSDUG00000006986	PABPN1L	72	46.411	ENSPEMG00000016624	Pabpn1l	60	48.765	Peromyscus_maniculatus_bairdii
ENSSDUG00000006986	PABPN1L	50	62.687	ENSPCIG00000007038	-	67	69.072	Phascolarctos_cinereus
ENSSDUG00000006986	PABPN1L	100	90.875	ENSPFOG00000007001	PABPN1L	100	90.875	Poecilia_formosa
ENSSDUG00000006986	PABPN1L	100	90.875	ENSPLAG00000018431	PABPN1L	100	90.875	Poecilia_latipinna
ENSSDUG00000006986	PABPN1L	100	90.875	ENSPMEG00000009108	PABPN1L	100	90.875	Poecilia_mexicana
ENSSDUG00000006986	PABPN1L	68	85.326	ENSPMEG00000000169	-	91	85.326	Poecilia_mexicana
ENSSDUG00000006986	PABPN1L	88	92.208	ENSPREG00000022533	PABPN1L	92	92.488	Poecilia_reticulata
ENSSDUG00000006986	PABPN1L	73	52.736	ENSPPYG00000007655	PABPN1L	58	53.293	Pongo_abelii
ENSSDUG00000006986	PABPN1L	71	49.010	ENSPVAG00000002716	PABPN1L	58	52.727	Pteropus_vampyrus
ENSSDUG00000006986	PABPN1L	100	91.255	ENSPNYG00000004803	PABPN1L	100	92.395	Pundamilia_nyererei
ENSSDUG00000006986	PABPN1L	71	50.239	ENSRBIG00000030740	PABPN1L	59	52.096	Rhinopithecus_bieti
ENSSDUG00000006986	PABPN1L	71	50.239	ENSRROG00000032240	-	59	52.096	Rhinopithecus_roxellana
ENSSDUG00000006986	PABPN1L	71	52.404	ENSRROG00000035483	-	59	53.293	Rhinopithecus_roxellana
ENSSDUG00000006986	PABPN1L	71	50.746	ENSSBOG00000018410	PABPN1L	58	52.727	Saimiri_boliviensis_boliviensis
ENSSDUG00000006986	PABPN1L	100	88.848	ENSSMAG00000021348	PABPN1L	100	88.848	Scophthalmus_maximus
ENSSDUG00000006986	PABPN1L	100	99.620	ENSSLDG00000021845	PABPN1L	100	99.620	Seriola_lalandi_dorsalis
ENSSDUG00000006986	PABPN1L	57	62.667	ENSSPUG00000007031	PABPN1L	63	59.310	Sphenodon_punctatus
ENSSDUG00000006986	PABPN1L	100	96.198	ENSSPAG00000017978	PABPN1L	100	96.198	Stegastes_partitus
ENSSDUG00000006986	PABPN1L	78	41.784	ENSSSCG00000036367	PABPN1L	63	47.429	Sus_scrofa
ENSSDUG00000006986	PABPN1L	100	80.989	ENSTRUG00000024725	PABPN1L	100	80.989	Takifugu_rubripes
ENSSDUG00000006986	PABPN1L	73	94.792	ENSTNIG00000009416	PABPN1L	100	94.792	Tetraodon_nigroviridis
ENSSDUG00000006986	PABPN1L	56	55.975	ENSXETG00000011258	pabpn1l	72	52.229	Xenopus_tropicalis
ENSSDUG00000006986	PABPN1L	79	92.754	ENSXCOG00000003254	PABPN1L	92	92.019	Xiphophorus_couchianus
ENSSDUG00000006986	PABPN1L	81	87.793	ENSXMAG00000029090	PABPN1L	94	87.793	Xiphophorus_maculatus