EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000007019 (Gene tree)
Gene ID: 111232417
Gene Symbol: NCBP1
Alias: CBP80|NCBP|Sto1
Full Name: nuclear cap binding protein subunit 1
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 10630 bases
Position: chrBDQW01000331.1:10205447-10216076
Accession: 111232417
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000009622	MIF4G_like	PF09088.11	4.1e-37	1	1
ENSSDUP00000009689	MIF4G_like	PF09088.11	4.4e-37	1	1
ENSSDUP00000009679	MIF4G_like	PF09088.11	5.3e-37	1	1
ENSSDUP00000009679	MIF4G_like_2	PF09090.11	1.1e-86	1	1
ENSSDUP00000009689	MIF4G_like_2	PF09090.11	1.3e-76	1	1
ENSSDUP00000009622	MIF4G_like_2	PF09090.11	4.1e-74	1	1
ENSSDUP00000009679	MIF4G	PF02854.19	4.5e-27	1	1
ENSSDUP00000009622	MIF4G	PF02854.19	1.3e-26	1	1
ENSSDUP00000009689	MIF4G	PF02854.19	1.4e-26	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000009877	NCBP1-203	2946	-	ENSSDUP00000009689	729 (aa)	-	-
ENSSDUT00000009809	NCBP1-201	4087	-	ENSSDUP00000009622	727 (aa)	-	-
ENSSDUT00000009867	NCBP1-202	2370	XM_022759924	ENSSDUP00000009679	789 (aa)	XP_022615645	-

Gene Model

Click here to download ENSSDUG00000007019's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03013	RNA transport	KEGG
sdu03015	mRNA surveillance pathway	KEGG
sdu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000007019's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000007019	NCBP1	100	82.853	ENSG00000136937	NCBP1	99	83.270	Homo_sapiens
ENSSDUG00000007019	NCBP1	100	96.845	ENSAPOG00000008002	NCBP1	100	96.226	Acanthochromis_polyacanthus
ENSSDUG00000007019	NCBP1	100	82.900	ENSAMEG00000004763	NCBP1	99	83.312	Ailuropoda_melanoleuca
ENSSDUG00000007019	NCBP1	100	95.885	ENSACIG00000000274	NCBP1	100	95.466	Amphilophus_citrinellus
ENSSDUG00000007019	NCBP1	100	96.433	ENSAOCG00000021148	NCBP1	100	95.849	Amphiprion_ocellaris
ENSSDUG00000007019	NCBP1	100	96.433	ENSAPEG00000001701	NCBP1	100	95.849	Amphiprion_percula
ENSSDUG00000007019	NCBP1	100	96.433	ENSATEG00000006929	NCBP1	100	95.849	Anabas_testudineus
ENSSDUG00000007019	NCBP1	95	83.333	ENSAPLG00000016318	NCBP1	99	83.333	Anas_platyrhynchos
ENSSDUG00000007019	NCBP1	100	83.424	ENSACAG00000004409	NCBP1	87	83.000	Anolis_carolinensis
ENSSDUG00000007019	NCBP1	100	80.658	ENSANAG00000025744	NCBP1	99	82.778	Aotus_nancymaae
ENSSDUG00000007019	NCBP1	100	95.885	ENSACLG00000014812	NCBP1	100	95.094	Astatotilapia_calliptera
ENSSDUG00000007019	NCBP1	100	90.971	ENSAMXG00000016364	NCBP1	100	90.464	Astyanax_mexicanus
ENSSDUG00000007019	NCBP1	100	82.990	ENSBTAG00000009732	NCBP1	99	87.613	Bos_taurus
ENSSDUG00000007019	NCBP1	99	38.304	WBGene00018156	ncbp-1	100	36.531	Caenorhabditis_elegans
ENSSDUG00000007019	NCBP1	100	82.990	ENSCJAG00000010840	NCBP1	99	86.429	Callithrix_jacchus
ENSSDUG00000007019	NCBP1	100	83.128	ENSCAFG00000002445	NCBP1	99	83.523	Canis_familiaris
ENSSDUG00000007019	NCBP1	98	83.398	ENSCAFG00020017997	NCBP1	96	89.027	Canis_lupus_dingo
ENSSDUG00000007019	NCBP1	100	82.853	ENSCHIG00000020139	NCBP1	99	83.270	Capra_hircus
ENSSDUG00000007019	NCBP1	55	88.750	ENSTSYG00000011914	NCBP1	98	87.147	Carlito_syrichta
ENSSDUG00000007019	NCBP1	89	75.077	ENSCAPG00000014252	NCBP1	90	75.469	Cavia_aperea
ENSSDUG00000007019	NCBP1	95	82.713	ENSCPOG00000012573	NCBP1	98	82.713	Cavia_porcellus
ENSSDUG00000007019	NCBP1	100	82.853	ENSCCAG00000032297	NCBP1	99	83.270	Cebus_capucinus
ENSSDUG00000007019	NCBP1	100	82.853	ENSCATG00000010052	NCBP1	99	83.270	Cercocebus_atys
ENSSDUG00000007019	NCBP1	100	82.853	ENSCLAG00000014339	NCBP1	99	83.270	Chinchilla_lanigera
ENSSDUG00000007019	NCBP1	100	82.853	ENSCSAG00000010929	NCBP1	99	83.270	Chlorocebus_sabaeus
ENSSDUG00000007019	NCBP1	88	85.366	ENSCHOG00000010332	NCBP1	91	78.261	Choloepus_hoffmanni
ENSSDUG00000007019	NCBP1	100	80.796	ENSCPBG00000024344	NCBP1	99	83.172	Chrysemys_picta_bellii
ENSSDUG00000007019	NCBP1	99	54.235	ENSCING00000008990	-	99	54.235	Ciona_intestinalis
ENSSDUG00000007019	NCBP1	99	53.450	ENSCSAVG00000005300	-	99	53.927	Ciona_savignyi
ENSSDUG00000007019	NCBP1	100	82.853	ENSCANG00000036913	NCBP1	99	83.270	Colobus_angolensis_palliatus
ENSSDUG00000007019	NCBP1	100	82.305	ENSCGRG00001015771	Ncbp1	99	82.890	Cricetulus_griseus_chok1gshd
ENSSDUG00000007019	NCBP1	99	82.927	ENSCGRG00000010311	Ncbp1	99	82.927	Cricetulus_griseus_crigri
ENSSDUG00000007019	NCBP1	100	95.885	ENSCSEG00000012377	NCBP1	100	95.220	Cynoglossus_semilaevis
ENSSDUG00000007019	NCBP1	100	94.384	ENSCVAG00000008795	NCBP1	100	93.719	Cyprinodon_variegatus
ENSSDUG00000007019	NCBP1	100	82.167	ENSDNOG00000006885	NCBP1	99	82.510	Dasypus_novemcinctus
ENSSDUG00000007019	NCBP1	100	78.308	ENSDORG00000013652	Ncbp1	99	79.193	Dipodomys_ordii
ENSSDUG00000007019	NCBP1	90	34.168	FBgn0038887	CG7907	87	34.168	Drosophila_melanogaster
ENSSDUG00000007019	NCBP1	100	57.335	FBgn0022942	Cbp80	99	57.697	Drosophila_melanogaster
ENSSDUG00000007019	NCBP1	89	79.431	ENSETEG00000009705	NCBP1	89	79.431	Echinops_telfairi
ENSSDUG00000007019	NCBP1	100	73.598	ENSEBUG00000008386	NCBP1	99	73.770	Eptatretus_burgeri
ENSSDUG00000007019	NCBP1	100	82.853	ENSEASG00005022795	NCBP1	99	83.016	Equus_asinus_asinus
ENSSDUG00000007019	NCBP1	100	82.990	ENSECAG00000013847	NCBP1	99	83.143	Equus_caballus
ENSSDUG00000007019	NCBP1	100	79.012	ENSEEUG00000015973	NCBP1	99	79.893	Erinaceus_europaeus
ENSSDUG00000007019	NCBP1	100	91.370	ENSELUG00000022519	NCBP1	100	91.080	Esox_lucius
ENSSDUG00000007019	NCBP1	100	82.990	ENSFCAG00000001206	NCBP1	99	83.397	Felis_catus
ENSSDUG00000007019	NCBP1	98	83.822	ENSFALG00000001193	NCBP1	99	83.822	Ficedula_albicollis
ENSSDUG00000007019	NCBP1	100	82.579	ENSFDAG00000010864	NCBP1	99	83.016	Fukomys_damarensis
ENSSDUG00000007019	NCBP1	100	95.068	ENSFHEG00000000655	NCBP1	100	94.095	Fundulus_heteroclitus
ENSSDUG00000007019	NCBP1	100	91.370	ENSGMOG00000008653	NCBP1	99	90.704	Gadus_morhua
ENSSDUG00000007019	NCBP1	98	84.519	ENSGALG00000002087	NCBP1	99	83.838	Gallus_gallus
ENSSDUG00000007019	NCBP1	100	96.027	ENSGAFG00000017787	NCBP1	100	95.352	Gambusia_affinis
ENSSDUG00000007019	NCBP1	100	94.536	ENSGACG00000016772	NCBP1	99	93.860	Gasterosteus_aculeatus
ENSSDUG00000007019	NCBP1	100	83.265	ENSGAGG00000019483	NCBP1	99	83.501	Gopherus_agassizii
ENSSDUG00000007019	NCBP1	100	82.853	ENSGGOG00000001376	NCBP1	99	83.270	Gorilla_gorilla
ENSSDUG00000007019	NCBP1	100	95.885	ENSHBUG00000020843	NCBP1	100	95.094	Haplochromis_burtoni
ENSSDUG00000007019	NCBP1	100	82.716	ENSHGLG00000001882	NCBP1	99	83.143	Heterocephalus_glaber_female
ENSSDUG00000007019	NCBP1	99	73.546	ENSHGLG00000018112	-	99	72.693	Heterocephalus_glaber_female
ENSSDUG00000007019	NCBP1	100	82.716	ENSHGLG00100013014	NCBP1	99	83.143	Heterocephalus_glaber_male
ENSSDUG00000007019	NCBP1	99	73.269	ENSHGLG00100017373	-	99	72.440	Heterocephalus_glaber_male
ENSSDUG00000007019	NCBP1	74	87.690	ENSHCOG00000000204	NCBP1	87	87.690	Hippocampus_comes
ENSSDUG00000007019	NCBP1	100	89.863	ENSIPUG00000007275	ncbp1	100	89.698	Ictalurus_punctatus
ENSSDUG00000007019	NCBP1	100	82.990	ENSSTOG00000002695	NCBP1	99	83.397	Ictidomys_tridecemlineatus
ENSSDUG00000007019	NCBP1	100	95.199	ENSKMAG00000003594	NCBP1	100	94.340	Kryptolebias_marmoratus
ENSSDUG00000007019	NCBP1	100	93.649	ENSLBEG00000011661	NCBP1	100	93.052	Labrus_bergylta
ENSSDUG00000007019	NCBP1	99	78.580	ENSLACG00000013955	NCBP1	99	78.580	Latimeria_chalumnae
ENSSDUG00000007019	NCBP1	99	77.182	ENSLOCG00000009579	NCBP1	99	77.182	Lepisosteus_oculatus
ENSSDUG00000007019	NCBP1	100	82.853	ENSLAFG00000005999	NCBP1	99	83.270	Loxodonta_africana
ENSSDUG00000007019	NCBP1	100	82.853	ENSMFAG00000030994	NCBP1	99	83.270	Macaca_fascicularis
ENSSDUG00000007019	NCBP1	98	83.162	ENSMMUG00000012281	NCBP1	99	83.167	Macaca_mulatta
ENSSDUG00000007019	NCBP1	100	82.853	ENSMNEG00000042790	NCBP1	99	83.270	Macaca_nemestrina
ENSSDUG00000007019	NCBP1	100	82.853	ENSMLEG00000030374	NCBP1	99	83.270	Mandrillus_leucophaeus
ENSSDUG00000007019	NCBP1	100	96.022	ENSMAMG00000014806	NCBP1	100	95.346	Mastacembelus_armatus
ENSSDUG00000007019	NCBP1	97	94.141	ENSMZEG00005009290	-	100	94.141	Maylandia_zebra
ENSSDUG00000007019	NCBP1	100	95.885	ENSMZEG00005003469	NCBP1	100	95.094	Maylandia_zebra
ENSSDUG00000007019	NCBP1	98	82.776	ENSMAUG00000020583	Ncbp1	99	82.776	Mesocricetus_auratus
ENSSDUG00000007019	NCBP1	100	82.305	ENSMICG00000012682	NCBP1	99	82.763	Microcebus_murinus
ENSSDUG00000007019	NCBP1	100	82.305	ENSMOCG00000015818	Ncbp1	99	82.763	Microtus_ochrogaster
ENSSDUG00000007019	NCBP1	91	94.406	ENSMMOG00000002610	NCBP1	100	94.406	Mola_mola
ENSSDUG00000007019	NCBP1	100	82.442	ENSMODG00000003202	NCBP1	99	82.868	Monodelphis_domestica
ENSSDUG00000007019	NCBP1	100	96.022	ENSMALG00000003547	NCBP1	100	95.346	Monopterus_albus
ENSSDUG00000007019	NCBP1	100	82.305	MGP_CAROLIEiJ_G0025982	Ncbp1	99	83.016	Mus_caroli
ENSSDUG00000007019	NCBP1	100	82.305	ENSMUSG00000028330	Ncbp1	99	83.016	Mus_musculus
ENSSDUG00000007019	NCBP1	100	82.442	MGP_PahariEiJ_G0028318	Ncbp1	99	83.016	Mus_pahari
ENSSDUG00000007019	NCBP1	100	82.305	MGP_SPRETEiJ_G0026945	Ncbp1	99	83.016	Mus_spretus
ENSSDUG00000007019	NCBP1	100	83.265	ENSMPUG00000006399	NCBP1	99	83.650	Mustela_putorius_furo
ENSSDUG00000007019	NCBP1	98	82.134	ENSMLUG00000015201	NCBP1	99	82.134	Myotis_lucifugus
ENSSDUG00000007019	NCBP1	100	83.128	ENSNGAG00000014101	Ncbp1	99	83.162	Nannospalax_galili
ENSSDUG00000007019	NCBP1	78	96.916	ENSNBRG00000014674	NCBP1	97	96.916	Neolamprologus_brichardi
ENSSDUG00000007019	NCBP1	100	82.853	ENSNLEG00000016909	NCBP1	99	83.270	Nomascus_leucogenys
ENSSDUG00000007019	NCBP1	89	82.046	ENSMEUG00000010672	NCBP1	90	82.046	Notamacropus_eugenii
ENSSDUG00000007019	NCBP1	88	74.382	ENSOPRG00000002144	-	88	75.382	Ochotona_princeps
ENSSDUG00000007019	NCBP1	100	82.716	ENSODEG00000003232	NCBP1	99	83.143	Octodon_degus
ENSSDUG00000007019	NCBP1	100	95.885	ENSONIG00000001502	NCBP1	100	95.094	Oreochromis_niloticus
ENSSDUG00000007019	NCBP1	86	85.393	ENSOANG00000001918	NCBP1	100	85.393	Ornithorhynchus_anatinus
ENSSDUG00000007019	NCBP1	100	82.627	ENSOCUG00000013853	NCBP1	97	82.968	Oryctolagus_cuniculus
ENSSDUG00000007019	NCBP1	100	93.997	ENSORLG00000011008	NCBP1	100	93.617	Oryzias_latipes
ENSSDUG00000007019	NCBP1	100	94.270	ENSORLG00020017455	NCBP1	100	93.867	Oryzias_latipes_hni
ENSSDUG00000007019	NCBP1	100	94.134	ENSORLG00015012127	NCBP1	100	93.742	Oryzias_latipes_hsok
ENSSDUG00000007019	NCBP1	100	94.679	ENSOMEG00000020698	NCBP1	100	94.243	Oryzias_melastigma
ENSSDUG00000007019	NCBP1	100	82.763	ENSOGAG00000013888	NCBP1	99	83.186	Otolemur_garnettii
ENSSDUG00000007019	NCBP1	100	82.853	ENSOARG00000011233	NCBP1	99	83.270	Ovis_aries
ENSSDUG00000007019	NCBP1	100	82.853	ENSPPAG00000026462	NCBP1	99	83.270	Pan_paniscus
ENSSDUG00000007019	NCBP1	100	83.128	ENSPPRG00000022574	NCBP1	99	83.523	Panthera_pardus
ENSSDUG00000007019	NCBP1	100	83.128	ENSPTIG00000018507	NCBP1	99	83.523	Panthera_tigris_altaica
ENSSDUG00000007019	NCBP1	100	82.853	ENSPTRG00000021167	NCBP1	99	83.270	Pan_troglodytes
ENSSDUG00000007019	NCBP1	100	82.853	ENSPANG00000025591	NCBP1	99	83.270	Papio_anubis
ENSSDUG00000007019	NCBP1	100	87.517	ENSPKIG00000015861	NCBP1	99	86.524	Paramormyrops_kingsleyae
ENSSDUG00000007019	NCBP1	64	81.996	ENSPSIG00000009558	NCBP1	99	81.996	Pelodiscus_sinensis
ENSSDUG00000007019	NCBP1	100	90.164	ENSPMGG00000020476	NCBP1	100	90.063	Periophthalmus_magnuspinnatus
ENSSDUG00000007019	NCBP1	100	81.893	ENSPEMG00000020105	Ncbp1	99	82.510	Peromyscus_maniculatus_bairdii
ENSSDUG00000007019	NCBP1	99	68.467	ENSPMAG00000005533	NCBP1	99	68.467	Petromyzon_marinus
ENSSDUG00000007019	NCBP1	100	82.305	ENSPCIG00000015800	NCBP1	99	84.581	Phascolarctos_cinereus
ENSSDUG00000007019	NCBP1	100	95.498	ENSPFOG00000004158	NCBP1	100	94.869	Poecilia_formosa
ENSSDUG00000007019	NCBP1	100	96.027	ENSPLAG00000020002	NCBP1	100	95.226	Poecilia_latipinna
ENSSDUG00000007019	NCBP1	100	95.890	ENSPMEG00000019821	NCBP1	100	95.226	Poecilia_mexicana
ENSSDUG00000007019	NCBP1	100	95.349	ENSPREG00000006035	NCBP1	100	94.605	Poecilia_reticulata
ENSSDUG00000007019	NCBP1	100	82.853	ENSPPYG00000019426	NCBP1	99	83.270	Pongo_abelii
ENSSDUG00000007019	NCBP1	90	80.060	ENSPCAG00000009943	NCBP1	90	80.060	Procavia_capensis
ENSSDUG00000007019	NCBP1	81	87.500	ENSPCOG00000020024	NCBP1	98	87.500	Propithecus_coquereli
ENSSDUG00000007019	NCBP1	100	82.716	ENSPVAG00000005924	NCBP1	99	83.143	Pteropus_vampyrus
ENSSDUG00000007019	NCBP1	90	95.238	ENSPNYG00000002140	NCBP1	99	95.238	Pundamilia_nyererei
ENSSDUG00000007019	NCBP1	100	90.287	ENSPNAG00000027753	NCBP1	100	90.088	Pygocentrus_nattereri
ENSSDUG00000007019	NCBP1	100	82.442	ENSRNOG00000023605	Ncbp1	99	83.016	Rattus_norvegicus
ENSSDUG00000007019	NCBP1	100	82.853	ENSRBIG00000043175	NCBP1	99	83.270	Rhinopithecus_bieti
ENSSDUG00000007019	NCBP1	100	82.853	ENSRROG00000029767	NCBP1	99	83.270	Rhinopithecus_roxellana
ENSSDUG00000007019	NCBP1	100	82.853	ENSSBOG00000019378	NCBP1	98	87.805	Saimiri_boliviensis_boliviensis
ENSSDUG00000007019	NCBP1	69	80.469	ENSSHAG00000015882	NCBP1	72	80.469	Sarcophilus_harrisii
ENSSDUG00000007019	NCBP1	98	87.130	ENSSFOG00015001872	NCBP1	99	86.168	Scleropages_formosus
ENSSDUG00000007019	NCBP1	100	95.199	ENSSMAG00000007463	NCBP1	100	94.465	Scophthalmus_maximus
ENSSDUG00000007019	NCBP1	100	99.863	ENSSLDG00000021924	NCBP1	100	98.994	Seriola_lalandi_dorsalis
ENSSDUG00000007019	NCBP1	85	71.991	ENSSARG00000007274	NCBP1	86	71.991	Sorex_araneus
ENSSDUG00000007019	NCBP1	100	77.366	ENSSPUG00000008609	NCBP1	99	78.074	Sphenodon_punctatus
ENSSDUG00000007019	NCBP1	100	97.257	ENSSPAG00000012550	NCBP1	100	96.604	Stegastes_partitus
ENSSDUG00000007019	NCBP1	100	82.853	ENSSSCG00000005366	NCBP1	99	83.270	Sus_scrofa
ENSSDUG00000007019	NCBP1	100	78.052	ENSTGUG00000001472	NCBP1	99	78.841	Taeniopygia_guttata
ENSSDUG00000007019	NCBP1	100	93.553	ENSTRUG00000005287	NCBP1	100	93.208	Takifugu_rubripes
ENSSDUG00000007019	NCBP1	100	82.167	ENSTBEG00000004035	NCBP1	99	80.735	Tupaia_belangeri
ENSSDUG00000007019	NCBP1	88	85.222	ENSTTRG00000000507	NCBP1	88	85.222	Tursiops_truncatus
ENSSDUG00000007019	NCBP1	100	82.990	ENSUAMG00000005471	NCBP1	99	83.397	Ursus_americanus
ENSSDUG00000007019	NCBP1	97	81.250	ENSUMAG00000011865	NCBP1	99	82.991	Ursus_maritimus
ENSSDUG00000007019	NCBP1	100	79.012	ENSVPAG00000010537	NCBP1	99	79.848	Vicugna_pacos
ENSSDUG00000007019	NCBP1	100	83.128	ENSVVUG00000019725	NCBP1	99	83.523	Vulpes_vulpes
ENSSDUG00000007019	NCBP1	100	79.012	ENSXETG00000010179	ncbp1	99	79.241	Xenopus_tropicalis
ENSSDUG00000007019	NCBP1	100	95.753	ENSXMAG00000018253	NCBP1	100	94.975	Xiphophorus_maculatus