EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSSDUG00000007048 (Gene tree)
Gene ID
111237306
Gene Symbol
-
Alias
-
Full Name
poly(U)-binding-splicing factor PUF60-like
Gene Type
protein_coding
Species
Seriola_dumerili
Status
putative
Strand
Plus strand
Length
10901 bases
Position
chrBDQW01000850.1:352576-363476
Accession
111237306
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSSDUP00000009581RRM_1PF00076.221.4e-4512
ENSSDUP00000009581RRM_1PF00076.221.4e-4522
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSSDUT00000009769-1911XM_022766350ENSSDUP00000009581519 (aa)XP_022622071-
Gene Model
Click here to download ENSSDUG00000007048's gene model file
Pathways
Pathway IDPathway NameSource
sdu03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000007048's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSSDUG00000007048-9682.946ENSSDUG00000009935puf60b9782.136
ENSSDUG00000007048-5536.782ENSSDUG00000021434-6436.782
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSSDUG00000007048-9979.773ENSG00000179950PUF609980.888Homo_sapiens
ENSSDUG00000007048-9783.757ENSAPOG00000001713puf60b9783.562Acanthochromis_polyacanthus
ENSSDUG00000007048-9878.435ENSAMEG00000006406PUF609378.053Ailuropoda_melanoleuca
ENSSDUG00000007048-9787.377ENSACIG00000003263-9986.863Amphilophus_citrinellus
ENSSDUG00000007048-9584.970ENSACIG00000021705puf60b9783.936Amphilophus_citrinellus
ENSSDUG00000007048-9783.757ENSAOCG00000005395puf60b9784.337Amphiprion_ocellaris
ENSSDUG00000007048-9993.064ENSAOCG00000015558-9992.871Amphiprion_ocellaris
ENSSDUG00000007048-9679.563ENSAPEG00000011923puf60b9877.907Amphiprion_percula
ENSSDUG00000007048-9779.883ENSAPEG00000001836-9979.846Amphiprion_percula
ENSSDUG00000007048-9795.257ENSATEG00000006303-9795.257Anabas_testudineus
ENSSDUG00000007048-9783.984ENSATEG00000001730puf60b9782.975Anabas_testudineus
ENSSDUG00000007048-9880.534ENSAPLG00000010150PUF609980.762Anas_platyrhynchos
ENSSDUG00000007048-9779.846ENSACAG00000001645PUF609579.846Anolis_carolinensis
ENSSDUG00000007048-9979.962ENSANAG00000018626PUF609981.081Aotus_nancymaae
ENSSDUG00000007048-9584.970ENSACLG00000004462puf60b9783.936Astatotilapia_calliptera
ENSSDUG00000007048-9577.299ENSAMXG00000041030puf60b9777.210Astyanax_mexicanus
ENSSDUG00000007048-9782.792ENSAMXG00000036570puf60a9980.074Astyanax_mexicanus
ENSSDUG00000007048-9979.773ENSBTAG00000037493PUF609980.153Bos_taurus
ENSSDUG00000007048-7550.519WBGene00004389rnp-68350.495Caenorhabditis_elegans
ENSSDUG00000007048-9979.773ENSCJAG00000021485PUF609979.395Callithrix_jacchus
ENSSDUG00000007048-9880.153ENSCAFG00000001400PUF609379.771Canis_familiaris
ENSSDUG00000007048-9979.962ENSCAFG00020018754PUF609979.584Canis_lupus_dingo
ENSSDUG00000007048-9880.344ENSCHIG00000001618PUF608680.153Capra_hircus
ENSSDUG00000007048-9979.962ENSTSYG00000011912PUF609981.081Carlito_syrichta
ENSSDUG00000007048-9875.947ENSCPOG00000014613PUF609375.758Cavia_porcellus
ENSSDUG00000007048-9979.773ENSCCAG00000007744PUF609979.395Cebus_capucinus
ENSSDUG00000007048-9979.773ENSCATG00000035405PUF609979.395Cercocebus_atys
ENSSDUG00000007048-9880.534ENSCLAG00000009154PUF609280.153Chinchilla_lanigera
ENSSDUG00000007048-9781.081ENSCSAG00000008878PUF609980.888Chlorocebus_sabaeus
ENSSDUG00000007048-9780.695ENSCPBG00000005595PUF609880.455Chrysemys_picta_bellii
ENSSDUG00000007048-6259.226ENSCING00000002156-8759.403Ciona_intestinalis
ENSSDUG00000007048-9348.687ENSCING00000008436-9248.297Ciona_intestinalis
ENSSDUG00000007048-7970.000ENSCSAVG00000001385-9754.491Ciona_savignyi
ENSSDUG00000007048-9247.727ENSCSAVG00000004765-9448.571Ciona_savignyi
ENSSDUG00000007048-7982.979ENSCANG00000041843PUF6010082.742Colobus_angolensis_palliatus
ENSSDUG00000007048-9880.725ENSCGRG00001017442Puf609280.344Cricetulus_griseus_chok1gshd
ENSSDUG00000007048-9880.725ENSCGRG00000003717Puf609280.534Cricetulus_griseus_crigri
ENSSDUG00000007048-9684.585ENSCSEG00000019887puf60b9084.387Cynoglossus_semilaevis
ENSSDUG00000007048-9783.665ENSCSEG00000014845-8783.267Cynoglossus_semilaevis
ENSSDUG00000007048-9584.168ENSCVAG00000009386puf60b9981.800Cyprinodon_variegatus
ENSSDUG00000007048-8791.256ENSCVAG00000001560-9292.273Cyprinodon_variegatus
ENSSDUG00000007048-9782.274ENSDARG00000032175puf60a10089.407Danio_rerio
ENSSDUG00000007048-9777.203ENSDARG00000001241puf60b10088.976Danio_rerio
ENSSDUG00000007048-9566.994ENSDNOG00000043278PUF608966.798Dasypus_novemcinctus
ENSSDUG00000007048-9880.534ENSDORG00000004585Puf609480.153Dipodomys_ordii
ENSSDUG00000007048-9760.171ENSEBUG00000014291puf60b8363.248Eptatretus_burgeri
ENSSDUG00000007048-9369.959ENSEBUG00000005470-8569.278Eptatretus_burgeri
ENSSDUG00000007048-9979.962ENSEASG00005009695PUF609979.584Equus_asinus_asinus
ENSSDUG00000007048-9979.962ENSECAG00000024681PUF609779.773Equus_caballus
ENSSDUG00000007048-9779.846ENSELUG00000006507puf60b9778.450Esox_lucius
ENSSDUG00000007048-9985.143ENSELUG00000018443-9984.762Esox_lucius
ENSSDUG00000007048-9979.962ENSFCAG00000001045PUF609981.081Felis_catus
ENSSDUG00000007048-9871.374ENSFALG00000001136PUF609871.565Ficedula_albicollis
ENSSDUG00000007048-9880.725ENSFDAG00000017177PUF609280.344Fukomys_damarensis
ENSSDUG00000007048-9192.144ENSFHEG00000021687PUF609692.641Fundulus_heteroclitus
ENSSDUG00000007048-9783.789ENSFHEG00000020046puf60b9783.735Fundulus_heteroclitus
ENSSDUG00000007048-9669.094ENSGMOG00000006392puf60b9668.226Gadus_morhua
ENSSDUG00000007048-6588.047ENSGALG00000039901PUF609487.755Gallus_gallus
ENSSDUG00000007048-9786.248ENSGAFG00000004334-9986.051Gambusia_affinis
ENSSDUG00000007048-9783.789ENSGAFG00000021040puf60b9783.936Gambusia_affinis
ENSSDUG00000007048-9778.474ENSGACG00000001484-9679.513Gasterosteus_aculeatus
ENSSDUG00000007048-9772.070ENSGACG00000004717puf60b9671.484Gasterosteus_aculeatus
ENSSDUG00000007048-9780.695ENSGAGG00000013289PUF609280.645Gopherus_agassizii
ENSSDUG00000007048-9979.962ENSGGOG00000004646PUF609979.584Gorilla_gorilla
ENSSDUG00000007048-9795.059ENSHBUG00000009634-9795.257Haplochromis_burtoni
ENSSDUG00000007048-9784.180ENSHBUG00000015118puf60b9783.936Haplochromis_burtoni
ENSSDUG00000007048-9880.725ENSHGLG00000006111PUF609280.344Heterocephalus_glaber_female
ENSSDUG00000007048-9880.725ENSHGLG00100012362PUF609280.344Heterocephalus_glaber_male
ENSSDUG00000007048-9373.975ENSHCOG00000000378-9670.955Hippocampus_comes
ENSSDUG00000007048-9580.888ENSHCOG00000015541puf60b9781.274Hippocampus_comes
ENSSDUG00000007048-9578.082ENSIPUG00000004660puf60b9778.082Ictalurus_punctatus
ENSSDUG00000007048-9781.818ENSIPUG00000002453puf60a9981.818Ictalurus_punctatus
ENSSDUG00000007048-9880.534ENSSTOG00000025037PUF609380.153Ictidomys_tridecemlineatus
ENSSDUG00000007048-9880.725ENSJJAG00000001076Puf609280.344Jaculus_jaculus
ENSSDUG00000007048-9785.328ENSKMAG00000010106-9985.328Kryptolebias_marmoratus
ENSSDUG00000007048-9584.770ENSKMAG00000016745puf60b9783.936Kryptolebias_marmoratus
ENSSDUG00000007048-9681.584ENSLBEG00000012505puf60b9781.333Labrus_bergylta
ENSSDUG00000007048-6980.109ENSLACG00000005456PUF609980.109Latimeria_chalumnae
ENSSDUG00000007048-9984.221ENSLOCG00000010106puf60b9983.840Lepisosteus_oculatus
ENSSDUG00000007048-9879.580ENSLAFG00000022929PUF609379.389Loxodonta_africana
ENSSDUG00000007048-9979.773ENSMFAG00000043373PUF609979.395Macaca_fascicularis
ENSSDUG00000007048-9979.962ENSMMUG00000013558PUF609979.584Macaca_mulatta
ENSSDUG00000007048-9979.773ENSMNEG00000031099PUF609979.395Macaca_nemestrina
ENSSDUG00000007048-9781.081ENSMLEG00000040009PUF609980.888Mandrillus_leucophaeus
ENSSDUG00000007048-9796.450ENSMAMG00000019476-9796.450Mastacembelus_armatus
ENSSDUG00000007048-9683.762ENSMAMG00000010394puf60b9781.250Mastacembelus_armatus
ENSSDUG00000007048-9584.970ENSMZEG00005018515puf60b9783.936Maylandia_zebra
ENSSDUG00000007048-9795.059ENSMZEG00005019425-9795.257Maylandia_zebra
ENSSDUG00000007048-9880.266ENSMGAG00000013070PUF609588.081Meleagris_gallopavo
ENSSDUG00000007048-9165.779ENSMAUG00000018549-9166.253Mesocricetus_auratus
ENSSDUG00000007048-6886.339ENSMAUG00000014267-9085.792Mesocricetus_auratus
ENSSDUG00000007048-9979.962ENSMICG00000012226PUF609980.266Microcebus_murinus
ENSSDUG00000007048-9880.725ENSMOCG00000018780Puf609380.344Microtus_ochrogaster
ENSSDUG00000007048-9584.600ENSMMOG00000004217puf60b9784.232Mola_mola
ENSSDUG00000007048-9879.337ENSMMOG00000018059-9984.149Mola_mola
ENSSDUG00000007048-9879.962ENSMODG00000009161PUF609479.771Monodelphis_domestica
ENSSDUG00000007048-9776.125ENSMALG00000006797puf60b9775.342Monopterus_albus
ENSSDUG00000007048-9794.664ENSMALG00000000200-9794.466Monopterus_albus
ENSSDUG00000007048-9880.916MGP_CAROLIEiJ_G0019910Puf609280.534Mus_caroli
ENSSDUG00000007048-9880.916ENSMUSG00000002524Puf609280.534Mus_musculus
ENSSDUG00000007048-9880.916MGP_PahariEiJ_G0019920Puf609280.534Mus_pahari
ENSSDUG00000007048-9880.916MGP_SPRETEiJ_G0020812Puf609280.534Mus_spretus
ENSSDUG00000007048-9880.344ENSMPUG00000008137PUF609279.962Mustela_putorius_furo
ENSSDUG00000007048-9875.189ENSMLUG00000013032-9874.763Myotis_lucifugus
ENSSDUG00000007048-9879.962ENSMLUG00000000238-9379.580Myotis_lucifugus
ENSSDUG00000007048-9880.725ENSNGAG00000000712Puf609981.274Nannospalax_galili
ENSSDUG00000007048-9795.059ENSNBRG00000017223-9795.257Neolamprologus_brichardi
ENSSDUG00000007048-8381.778ENSNBRG00000013047puf60b9783.055Neolamprologus_brichardi
ENSSDUG00000007048-9979.962ENSNLEG00000002156PUF609979.584Nomascus_leucogenys
ENSSDUG00000007048-6991.667ENSOPRG00000002147PUF607491.126Ochotona_princeps
ENSSDUG00000007048-6587.283ENSODEG00000014024-8386.705Octodon_degus
ENSSDUG00000007048-9360.896ENSODEG00000015513-9459.841Octodon_degus
ENSSDUG00000007048-9684.752ENSONIG00000006247puf60b9583.730Oreochromis_niloticus
ENSSDUG00000007048-9794.269ENSONIG00000014030-9794.466Oreochromis_niloticus
ENSSDUG00000007048-9766.929ENSOANG00000006962PUF609966.535Ornithorhynchus_anatinus
ENSSDUG00000007048-9589.400ENSORLG00000028655-9789.400Oryzias_latipes
ENSSDUG00000007048-9784.180ENSORLG00000012279puf60b9783.735Oryzias_latipes
ENSSDUG00000007048-9784.180ENSORLG00020007333puf609783.735Oryzias_latipes_hni
ENSSDUG00000007048-9790.354ENSORLG00020018144-9790.354Oryzias_latipes_hni
ENSSDUG00000007048-9790.157ENSORLG00015016833-9790.157Oryzias_latipes_hsok
ENSSDUG00000007048-9783.984ENSORLG00015007718puf60b9982.812Oryzias_latipes_hsok
ENSSDUG00000007048-9990.019ENSOMEG00000022185-9990.019Oryzias_melastigma
ENSSDUG00000007048-9782.409ENSOMEG00000001643puf60b9781.559Oryzias_melastigma
ENSSDUG00000007048-9880.534ENSOGAG00000006259PUF609380.153Otolemur_garnettii
ENSSDUG00000007048-9878.695ENSOARG00000016235PUF609878.695Ovis_aries
ENSSDUG00000007048-9979.811ENSPPAG00000029933PUF609979.434Pan_paniscus
ENSSDUG00000007048-9979.962ENSPPRG00000003257PUF609981.081Panthera_pardus
ENSSDUG00000007048-9878.113ENSPTIG00000009795PUF609977.694Panthera_tigris_altaica
ENSSDUG00000007048-9979.962ENSPTRG00000043963-9979.584Pan_troglodytes
ENSSDUG00000007048-9979.811ENSPTRG00000020670PUF609979.434Pan_troglodytes
ENSSDUG00000007048-9979.773ENSPANG00000021936PUF609979.395Papio_anubis
ENSSDUG00000007048-9984.601ENSPKIG00000004295puf60a10091.369Paramormyrops_kingsleyae
ENSSDUG00000007048-9784.540ENSPKIG00000012204puf60b9784.493Paramormyrops_kingsleyae
ENSSDUG00000007048-9681.996ENSPSIG00000004679PUF609681.605Pelodiscus_sinensis
ENSSDUG00000007048-9582.772ENSPMGG00000013444puf60b9782.574Periophthalmus_magnuspinnatus
ENSSDUG00000007048-9880.725ENSPEMG00000008820Puf609280.344Peromyscus_maniculatus_bairdii
ENSSDUG00000007048-9980.151ENSPCIG00000020270PUF609781.081Phascolarctos_cinereus
ENSSDUG00000007048-9988.868ENSPFOG00000011118-9988.868Poecilia_formosa
ENSSDUG00000007048-9783.789ENSPFOG00000019217puf60b9879.651Poecilia_formosa
ENSSDUG00000007048-9584.569ENSPLAG00000010754puf60b9783.735Poecilia_latipinna
ENSSDUG00000007048-9988.676ENSPLAG00000017025-9288.676Poecilia_latipinna
ENSSDUG00000007048-9783.789ENSPMEG00000000838puf60b9783.735Poecilia_mexicana
ENSSDUG00000007048-9989.251ENSPMEG00000009767-9289.251Poecilia_mexicana
ENSSDUG00000007048-9780.989ENSPREG00000005440puf60b9978.810Poecilia_reticulata
ENSSDUG00000007048-7981.517ENSPPYG00000018951-9581.517Pongo_abelii
ENSSDUG00000007048-7982.979ENSPCAG00000014837PUF6010082.742Procavia_capensis
ENSSDUG00000007048-9979.773ENSPCOG00000027981PUF609979.848Propithecus_coquereli
ENSSDUG00000007048-9791.772ENSPVAG00000016167PUF608091.139Pteropus_vampyrus
ENSSDUG00000007048-9795.059ENSPNYG00000004273-9795.257Pundamilia_nyererei
ENSSDUG00000007048-9584.970ENSPNYG00000002556puf60b9783.936Pundamilia_nyererei
ENSSDUG00000007048-9781.055ENSPNAG00000019909puf60a9880.664Pygocentrus_nattereri
ENSSDUG00000007048-9775.889ENSPNAG00000019415puf60b8775.644Pygocentrus_nattereri
ENSSDUG00000007048-9880.916ENSRNOG00000009960Puf609280.534Rattus_norvegicus
ENSSDUG00000007048-9979.962ENSRBIG00000035274PUF609979.584Rhinopithecus_bieti
ENSSDUG00000007048-9979.773ENSRROG00000029360PUF609979.395Rhinopithecus_roxellana
ENSSDUG00000007048-9978.302ENSSBOG00000027089PUF609978.113Saimiri_boliviensis_boliviensis
ENSSDUG00000007048-8982.316ENSSHAG00000006668PUF608982.415Sarcophilus_harrisii
ENSSDUG00000007048-9978.689ENSSFOG00015019371puf60a9883.984Scleropages_formosus
ENSSDUG00000007048-9777.308ENSSFOG00015019619puf60b9879.716Scleropages_formosus
ENSSDUG00000007048-7189.965ENSSMAG00000016381puf60b7489.869Scophthalmus_maximus
ENSSDUG00000007048-9684.661ENSSLDG00000024011puf60b9781.836Seriola_lalandi_dorsalis
ENSSDUG00000007048-9595.591ENSSLDG00000007366-9795.591Seriola_lalandi_dorsalis
ENSSDUG00000007048-6476.106ENSSPUG00000013518PUF609275.444Sphenodon_punctatus
ENSSDUG00000007048-9794.862ENSSPAG00000020285-9994.862Stegastes_partitus
ENSSDUG00000007048-9781.559ENSSPAG00000012144puf60b9782.031Stegastes_partitus
ENSSDUG00000007048-9781.081ENSSSCG00000038800PUF609977.083Sus_scrofa
ENSSDUG00000007048-9879.079ENSTGUG00000012797-9978.887Taeniopygia_guttata
ENSSDUG00000007048-9684.554ENSTRUG00000005420puf60b9782.031Takifugu_rubripes
ENSSDUG00000007048-9586.613ENSTRUG00000008843-9687.018Takifugu_rubripes
ENSSDUG00000007048-9884.961ENSTNIG00000003069-9985.742Tetraodon_nigroviridis
ENSSDUG00000007048-9685.149ENSTNIG00000013675puf60b9982.785Tetraodon_nigroviridis
ENSSDUG00000007048-8266.193ENSTBEG00000001899-10067.045Tupaia_belangeri
ENSSDUG00000007048-6085.567ENSTBEG00000002751-9785.567Tupaia_belangeri
ENSSDUG00000007048-9779.304ENSTTRG00000017088PUF609980.116Tursiops_truncatus
ENSSDUG00000007048-9979.962ENSUAMG00000024917PUF609979.584Ursus_americanus
ENSSDUG00000007048-9875.573ENSUMAG00000000272PUF609375.000Ursus_maritimus
ENSSDUG00000007048-9880.534ENSVVUG00000022527PUF609981.081Vulpes_vulpes
ENSSDUG00000007048-9779.537ENSXETG00000012469puf609780.116Xenopus_tropicalis
ENSSDUG00000007048-9581.964ENSXCOG00000012355puf60b9979.804Xiphophorus_couchianus
ENSSDUG00000007048-9884.690ENSXMAG00000010507-9984.496Xiphophorus_maculatus
ENSSDUG00000007048-9783.789ENSXMAG00000001862puf60b9783.735Xiphophorus_maculatus

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