EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000007122 (Gene tree)
Gene ID: 111222624
Gene Symbol: smg5
Alias: zgc:113841
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 19283 bases
Position: chrBDQW01000104.1:924214-943496
Accession: 111222624
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000009727	EST1	PF10374.9	7.3e-25	1	1
ENSSDUP00000009727	EST1_DNA_bind	PF10373.9	8.8e-39	1	1
ENSSDUP00000009727	PIN_4	PF13638.6	5e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000009916	-	5223	XM_022746417	ENSSDUP00000009727	1130 (aa)	XP_022602138	UPI000BBF213D

Gene Model

Click here to download ENSSDUG00000007122's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000007122's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000007122	smg5	92	76.869	ENSG00000198952	SMG5	50	60.145	Homo_sapiens
ENSSDUG00000007122	smg5	100	94.779	ENSAPOG00000019690	smg5	100	94.956	Acanthochromis_polyacanthus
ENSSDUG00000007122	smg5	98	59.603	ENSAMEG00000014458	SMG5	100	58.739	Ailuropoda_melanoleuca
ENSSDUG00000007122	smg5	100	84.248	ENSACIG00000001353	smg5	99	83.894	Amphilophus_citrinellus
ENSSDUG00000007122	smg5	100	94.779	ENSAOCG00000019483	smg5	100	94.425	Amphiprion_ocellaris
ENSSDUG00000007122	smg5	100	94.690	ENSAPEG00000022949	smg5	100	94.336	Amphiprion_percula
ENSSDUG00000007122	smg5	100	91.873	ENSATEG00000005348	smg5	100	91.784	Anabas_testudineus
ENSSDUG00000007122	smg5	98	63.482	ENSAPLG00000010263	SMG5	100	61.964	Anas_platyrhynchos
ENSSDUG00000007122	smg5	92	76.869	ENSANAG00000032899	SMG5	99	60.035	Aotus_nancymaae
ENSSDUG00000007122	smg5	100	90.220	ENSACLG00000009311	smg5	100	90.829	Astatotilapia_calliptera
ENSSDUG00000007122	smg5	100	79.204	ENSAMXG00000024616	smg5	100	78.464	Astyanax_mexicanus
ENSSDUG00000007122	smg5	55	56.149	ENSBTAG00000009435	SMG5	99	61.253	Bos_taurus
ENSSDUG00000007122	smg5	91	50.000	ENSBTAG00000021747	-	85	48.687	Bos_taurus
ENSSDUG00000007122	smg5	92	76.869	ENSCJAG00000005684	SMG5	99	60.035	Callithrix_jacchus
ENSSDUG00000007122	smg5	92	76.000	ENSCAFG00000016839	SMG5	99	59.627	Canis_familiaris
ENSSDUG00000007122	smg5	92	76.000	ENSCAFG00020006061	SMG5	99	59.627	Canis_lupus_dingo
ENSSDUG00000007122	smg5	85	49.507	ENSCHIG00000006323	-	93	49.144	Capra_hircus
ENSSDUG00000007122	smg5	93	77.209	ENSCHIG00000007709	SMG5	99	61.165	Capra_hircus
ENSSDUG00000007122	smg5	99	61.770	ENSTSYG00000004099	SMG5	99	60.371	Carlito_syrichta
ENSSDUG00000007122	smg5	81	77.083	ENSCAPG00000003631	SMG5	100	46.568	Cavia_aperea
ENSSDUG00000007122	smg5	55	57.605	ENSCPOG00000015696	SMG5	50	61.749	Cavia_porcellus
ENSSDUG00000007122	smg5	92	76.869	ENSCCAG00000027409	SMG5	51	60.145	Cebus_capucinus
ENSSDUG00000007122	smg5	92	77.103	ENSCATG00000030539	SMG5	50	60.326	Cercocebus_atys
ENSSDUG00000007122	smg5	55	56.704	ENSCLAG00000003983	SMG5	50	60.256	Chinchilla_lanigera
ENSSDUG00000007122	smg5	92	77.103	ENSCSAG00000002120	SMG5	50	60.326	Chlorocebus_sabaeus
ENSSDUG00000007122	smg5	50	75.812	ENSCHOG00000008741	-	57	75.812	Choloepus_hoffmanni
ENSSDUG00000007122	smg5	94	61.967	ENSCPBG00000025848	SMG5	100	61.168	Chrysemys_picta_bellii
ENSSDUG00000007122	smg5	75	37.685	ENSCING00000008706	-	84	37.685	Ciona_intestinalis
ENSSDUG00000007122	smg5	93	77.083	ENSCANG00000029208	SMG5	50	55.135	Colobus_angolensis_palliatus
ENSSDUG00000007122	smg5	99	61.402	ENSCGRG00001006336	Smg5	99	59.526	Cricetulus_griseus_chok1gshd
ENSSDUG00000007122	smg5	98	61.226	ENSCGRG00000005111	Smg5	100	59.286	Cricetulus_griseus_crigri
ENSSDUG00000007122	smg5	100	87.611	ENSCSEG00000014220	smg5	100	87.611	Cynoglossus_semilaevis
ENSSDUG00000007122	smg5	100	72.478	ENSCVAG00000000529	smg5	99	72.124	Cyprinodon_variegatus
ENSSDUG00000007122	smg5	100	78.150	ENSDARG00000041481	smg5	100	77.417	Danio_rerio
ENSSDUG00000007122	smg5	81	38.859	ENSDNOG00000039862	-	86	38.315	Dasypus_novemcinctus
ENSSDUG00000007122	smg5	92	70.794	ENSDNOG00000000051	SMG5	99	58.070	Dasypus_novemcinctus
ENSSDUG00000007122	smg5	99	61.416	ENSDORG00000010382	Smg5	99	59.859	Dipodomys_ordii
ENSSDUG00000007122	smg5	75	85.437	ENSETEG00000010336	SMG5	81	85.437	Echinops_telfairi
ENSSDUG00000007122	smg5	79	53.415	ENSEBUG00000003739	smg5	88	53.528	Eptatretus_burgeri
ENSSDUG00000007122	smg5	55	56.634	ENSEASG00005019122	SMG5	99	60.494	Equus_asinus_asinus
ENSSDUG00000007122	smg5	93	77.442	ENSECAG00000001389	SMG5	99	59.877	Equus_caballus
ENSSDUG00000007122	smg5	66	77.374	ENSEEUG00000012690	SMG5	75	76.536	Erinaceus_europaeus
ENSSDUG00000007122	smg5	100	81.866	ENSELUG00000012585	smg5	100	81.057	Esox_lucius
ENSSDUG00000007122	smg5	99	60.426	ENSFCAG00000011783	SMG5	99	59.716	Felis_catus
ENSSDUG00000007122	smg5	59	62.963	ENSFALG00000001166	-	96	60.000	Ficedula_albicollis
ENSSDUG00000007122	smg5	98	61.462	ENSFDAG00000017388	SMG5	100	60.737	Fukomys_damarensis
ENSSDUG00000007122	smg5	98	77.788	ENSFHEG00000013939	smg5	94	91.429	Fundulus_heteroclitus
ENSSDUG00000007122	smg5	100	78.740	ENSGMOG00000007310	smg5	100	78.428	Gadus_morhua
ENSSDUG00000007122	smg5	99	63.693	ENSGALG00000029918	-	99	62.018	Gallus_gallus
ENSSDUG00000007122	smg5	92	91.054	ENSGAFG00000021691	smg5	99	91.054	Gambusia_affinis
ENSSDUG00000007122	smg5	100	87.852	ENSGACG00000013142	smg5	100	86.972	Gasterosteus_aculeatus
ENSSDUG00000007122	smg5	99	63.652	ENSGAGG00000016131	SMG5	99	62.072	Gopherus_agassizii
ENSSDUG00000007122	smg5	92	76.869	ENSGGOG00000010932	SMG5	50	60.254	Gorilla_gorilla
ENSSDUG00000007122	smg5	100	90.212	ENSHBUG00000008654	smg5	100	91.174	Haplochromis_burtoni
ENSSDUG00000007122	smg5	99	61.150	ENSHGLG00000019152	SMG5	92	75.982	Heterocephalus_glaber_female
ENSSDUG00000007122	smg5	91	61.441	ENSHGLG00100015948	SMG5	90	75.991	Heterocephalus_glaber_male
ENSSDUG00000007122	smg5	86	79.039	ENSHCOG00000010229	smg5	93	83.532	Hippocampus_comes
ENSSDUG00000007122	smg5	100	78.111	ENSIPUG00000006624	Smg5	100	77.337	Ictalurus_punctatus
ENSSDUG00000007122	smg5	99	61.504	ENSSTOG00000001780	SMG5	92	75.982	Ictidomys_tridecemlineatus
ENSSDUG00000007122	smg5	99	61.239	ENSJJAG00000022763	Smg5	99	60.334	Jaculus_jaculus
ENSSDUG00000007122	smg5	100	90.363	ENSKMAG00000014586	smg5	100	90.539	Kryptolebias_marmoratus
ENSSDUG00000007122	smg5	100	90.796	ENSLBEG00000002145	smg5	100	91.770	Labrus_bergylta
ENSSDUG00000007122	smg5	99	57.105	ENSLACG00000010521	SMG5	99	56.552	Latimeria_chalumnae
ENSSDUG00000007122	smg5	100	69.075	ENSLOCG00000008380	smg5	99	71.592	Lepisosteus_oculatus
ENSSDUG00000007122	smg5	99	60.585	ENSLAFG00000006241	SMG5	99	60.319	Loxodonta_africana
ENSSDUG00000007122	smg5	92	77.103	ENSMFAG00000045357	SMG5	50	60.326	Macaca_fascicularis
ENSSDUG00000007122	smg5	92	77.103	ENSMMUG00000000090	SMG5	92	75.751	Macaca_mulatta
ENSSDUG00000007122	smg5	92	77.103	ENSMNEG00000044425	SMG5	50	60.145	Macaca_nemestrina
ENSSDUG00000007122	smg5	92	67.290	ENSMLEG00000041192	SMG5	92	66.051	Mandrillus_leucophaeus
ENSSDUG00000007122	smg5	100	91.681	ENSMAMG00000010683	smg5	100	92.301	Mastacembelus_armatus
ENSSDUG00000007122	smg5	66	77.554	ENSMZEG00005016543	smg5	100	77.927	Maylandia_zebra
ENSSDUG00000007122	smg5	100	80.106	ENSMZEG00005015815	smg5	99	80.617	Maylandia_zebra
ENSSDUG00000007122	smg5	92	76.347	ENSMAUG00000010381	Smg5	99	60.211	Mesocricetus_auratus
ENSSDUG00000007122	smg5	92	77.412	ENSMICG00000002257	SMG5	50	59.854	Microcebus_murinus
ENSSDUG00000007122	smg5	99	60.638	ENSMOCG00000016590	Smg5	99	60.140	Microtus_ochrogaster
ENSSDUG00000007122	smg5	100	86.067	ENSMMOG00000017199	smg5	100	86.508	Mola_mola
ENSSDUG00000007122	smg5	81	76.512	ENSMODG00000016901	SMG5	98	59.078	Monodelphis_domestica
ENSSDUG00000007122	smg5	68	34.527	ENSMODG00000004511	-	80	34.204	Monodelphis_domestica
ENSSDUG00000007122	smg5	74	34.375	ENSMODG00000004532	-	90	33.929	Monodelphis_domestica
ENSSDUG00000007122	smg5	69	34.771	ENSMODG00000004735	-	86	34.771	Monodelphis_domestica
ENSSDUG00000007122	smg5	71	33.249	ENSMODG00000010675	-	90	33.503	Monodelphis_domestica
ENSSDUG00000007122	smg5	100	90.893	ENSMALG00000010375	smg5	100	89.832	Monopterus_albus
ENSSDUG00000007122	smg5	99	61.647	MGP_CAROLIEiJ_G0025163	Smg5	100	88.268	Mus_caroli
ENSSDUG00000007122	smg5	99	61.668	ENSMUSG00000001415	Smg5	99	88.268	Mus_musculus
ENSSDUG00000007122	smg5	99	61.757	MGP_PahariEiJ_G0026606	Smg5	100	88.827	Mus_pahari
ENSSDUG00000007122	smg5	99	61.491	MGP_SPRETEiJ_G0026104	Smg5	100	88.268	Mus_spretus
ENSSDUG00000007122	smg5	94	59.775	ENSMPUG00000004546	SMG5	100	57.717	Mustela_putorius_furo
ENSSDUG00000007122	smg5	99	61.504	ENSMLUG00000008518	SMG5	99	60.619	Myotis_lucifugus
ENSSDUG00000007122	smg5	78	48.537	ENSNGAG00000012101	-	86	47.942	Nannospalax_galili
ENSSDUG00000007122	smg5	99	61.593	ENSNGAG00000020706	Smg5	99	60.407	Nannospalax_galili
ENSSDUG00000007122	smg5	97	76.916	ENSNBRG00000004332	smg5	97	76.825	Neolamprologus_brichardi
ENSSDUG00000007122	smg5	92	77.103	ENSNLEG00000012439	SMG5	50	59.964	Nomascus_leucogenys
ENSSDUG00000007122	smg5	55	55.987	ENSMEUG00000012834	SMG5	50	59.341	Notamacropus_eugenii
ENSSDUG00000007122	smg5	99	61.858	ENSOPRG00000009152	SMG5	99	61.253	Ochotona_princeps
ENSSDUG00000007122	smg5	99	61.087	ENSODEG00000012237	SMG5	99	60.699	Octodon_degus
ENSSDUG00000007122	smg5	100	90.821	ENSONIG00000008632	smg5	100	90.821	Oreochromis_niloticus
ENSSDUG00000007122	smg5	91	77.887	ENSOCUG00000012886	SMG5	100	60.956	Oryctolagus_cuniculus
ENSSDUG00000007122	smg5	78	43.632	ENSOCUG00000023338	-	88	43.632	Oryctolagus_cuniculus
ENSSDUG00000007122	smg5	100	85.044	ENSORLG00000016239	smg5	100	86.372	Oryzias_latipes
ENSSDUG00000007122	smg5	100	85.500	ENSORLG00020013127	smg5	100	86.372	Oryzias_latipes_hni
ENSSDUG00000007122	smg5	100	85.221	ENSORLG00015019014	smg5	100	86.549	Oryzias_latipes_hsok
ENSSDUG00000007122	smg5	84	85.158	ENSOMEG00000021330	smg5	93	84.709	Oryzias_melastigma
ENSSDUG00000007122	smg5	55	55.663	ENSOGAG00000004966	SMG5	50	59.347	Otolemur_garnettii
ENSSDUG00000007122	smg5	93	77.209	ENSOARG00000005778	SMG5	99	61.165	Ovis_aries
ENSSDUG00000007122	smg5	85	49.760	ENSOARG00000011963	-	93	49.403	Ovis_aries
ENSSDUG00000007122	smg5	92	76.636	ENSPPAG00000011996	SMG5	50	60.145	Pan_paniscus
ENSSDUG00000007122	smg5	98	60.054	ENSPPRG00000011901	SMG5	100	59.369	Panthera_pardus
ENSSDUG00000007122	smg5	97	56.506	ENSPTIG00000007892	SMG5	95	57.022	Panthera_tigris_altaica
ENSSDUG00000007122	smg5	92	76.636	ENSPTRG00000049282	-	83	75.766	Pan_troglodytes
ENSSDUG00000007122	smg5	92	76.636	ENSPTRG00000023925	SMG5	50	60.145	Pan_troglodytes
ENSSDUG00000007122	smg5	92	77.103	ENSPANG00000011201	SMG5	50	60.326	Papio_anubis
ENSSDUG00000007122	smg5	100	76.283	ENSPKIG00000009402	smg5	100	75.841	Paramormyrops_kingsleyae
ENSSDUG00000007122	smg5	98	64.119	ENSPSIG00000015198	SMG5	100	62.590	Pelodiscus_sinensis
ENSSDUG00000007122	smg5	100	72.639	ENSPMGG00000010465	smg5	100	71.643	Periophthalmus_magnuspinnatus
ENSSDUG00000007122	smg5	84	61.314	ENSPMAG00000000410	smg5	99	46.167	Petromyzon_marinus
ENSSDUG00000007122	smg5	55	57.929	ENSPCIG00000018938	SMG5	50	60.989	Phascolarctos_cinereus
ENSSDUG00000007122	smg5	100	86.814	ENSPFOG00000010191	smg5	100	87.434	Poecilia_formosa
ENSSDUG00000007122	smg5	100	86.637	ENSPLAG00000009332	smg5	100	87.434	Poecilia_latipinna
ENSSDUG00000007122	smg5	100	86.814	ENSPMEG00000014105	smg5	100	87.345	Poecilia_mexicana
ENSSDUG00000007122	smg5	100	86.903	ENSPREG00000017713	smg5	100	88.053	Poecilia_reticulata
ENSSDUG00000007122	smg5	92	76.869	ENSPPYG00000000723	SMG5	50	60.145	Pongo_abelii
ENSSDUG00000007122	smg5	63	80.556	ENSPCAG00000008412	SMG5	81	80.556	Procavia_capensis
ENSSDUG00000007122	smg5	92	77.647	ENSPCOG00000004741	SMG5	51	60.109	Propithecus_coquereli
ENSSDUG00000007122	smg5	93	64.203	ENSPVAG00000016748	SMG5	92	63.741	Pteropus_vampyrus
ENSSDUG00000007122	smg5	100	89.807	ENSPNYG00000013397	smg5	100	90.589	Pundamilia_nyererei
ENSSDUG00000007122	smg5	100	78.994	ENSPNAG00000028363	smg5	100	78.433	Pygocentrus_nattereri
ENSSDUG00000007122	smg5	99	61.525	ENSRNOG00000019590	Smg5	99	59.771	Rattus_norvegicus
ENSSDUG00000007122	smg5	92	77.336	ENSRBIG00000027428	SMG5	50	60.326	Rhinopithecus_bieti
ENSSDUG00000007122	smg5	92	77.336	ENSRROG00000030035	SMG5	50	60.145	Rhinopithecus_roxellana
ENSSDUG00000007122	smg5	92	77.103	ENSSBOG00000033339	SMG5	50	60.145	Saimiri_boliviensis_boliviensis
ENSSDUG00000007122	smg5	70	40.194	ENSSHAG00000009572	-	79	40.194	Sarcophilus_harrisii
ENSSDUG00000007122	smg5	69	36.709	ENSSHAG00000000561	-	88	36.203	Sarcophilus_harrisii
ENSSDUG00000007122	smg5	98	60.807	ENSSHAG00000014163	SMG5	100	59.821	Sarcophilus_harrisii
ENSSDUG00000007122	smg5	50	36.456	ENSSHAG00000000935	-	81	36.456	Sarcophilus_harrisii
ENSSDUG00000007122	smg5	100	77.612	ENSSFOG00015024175	smg5	100	76.011	Scleropages_formosus
ENSSDUG00000007122	smg5	100	93.717	ENSSMAG00000013059	smg5	100	93.717	Scophthalmus_maximus
ENSSDUG00000007122	smg5	100	99.027	ENSSLDG00000011418	smg5	100	99.027	Seriola_lalandi_dorsalis
ENSSDUG00000007122	smg5	85	69.784	ENSSARG00000012484	SMG5	94	69.784	Sorex_araneus
ENSSDUG00000007122	smg5	94	61.397	ENSSPUG00000002260	SMG5	100	61.127	Sphenodon_punctatus
ENSSDUG00000007122	smg5	100	93.816	ENSSPAG00000014266	smg5	100	93.993	Stegastes_partitus
ENSSDUG00000007122	smg5	93	71.395	ENSSSCG00000006490	-	100	60.374	Sus_scrofa
ENSSDUG00000007122	smg5	91	59.640	ENSSSCG00000039308	-	99	47.132	Sus_scrofa
ENSSDUG00000007122	smg5	99	63.467	ENSTGUG00000003748	-	99	61.951	Taeniopygia_guttata
ENSSDUG00000007122	smg5	100	82.597	ENSTRUG00000012580	smg5	100	82.332	Takifugu_rubripes
ENSSDUG00000007122	smg5	100	81.618	ENSTNIG00000010303	smg5	100	81.794	Tetraodon_nigroviridis
ENSSDUG00000007122	smg5	52	84.236	ENSTBEG00000002777	SMG5	58	84.236	Tupaia_belangeri
ENSSDUG00000007122	smg5	99	58.142	ENSTTRG00000001401	SMG5	99	57.546	Tursiops_truncatus
ENSSDUG00000007122	smg5	92	75.708	ENSUAMG00000013721	SMG5	99	59.272	Ursus_americanus
ENSSDUG00000007122	smg5	91	74.083	ENSUMAG00000018041	SMG5	94	73.176	Ursus_maritimus
ENSSDUG00000007122	smg5	92	72.277	ENSVPAG00000009446	SMG5	92	65.937	Vicugna_pacos
ENSSDUG00000007122	smg5	99	60.958	ENSVVUG00000005887	SMG5	99	59.486	Vulpes_vulpes
ENSSDUG00000007122	smg5	79	54.707	ENSXETG00000033791	SMG5	95	53.218	Xenopus_tropicalis
ENSSDUG00000007122	smg5	92	91.892	ENSXCOG00000004379	smg5	100	91.892	Xiphophorus_couchianus
ENSSDUG00000007122	smg5	100	86.106	ENSXMAG00000013499	smg5	100	87.257	Xiphophorus_maculatus