EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000007530 (Gene tree)
Gene ID: 111230535
Gene Symbol: -
Alias: -
Full Name: probable ATP-dependent RNA helicase ddx6
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 5302 bases
Position: chrBDQW01000273.1:559328-564629
Accession: 111230535
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000010308	DEAD	PF00270.29	3.7e-41	1	1
ENSSDUP00000010332	DEAD	PF00270.29	8.5e-25	1	2
ENSSDUP00000010332	DEAD	PF00270.29	8.5e-25	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000010501	-	2325	XM_022757293	ENSSDUP00000010308	490 (aa)	XP_022613014	UPI000BBE0BF2
ENSSDUT00000010525	-	1326	-	ENSSDUP00000010332	441 (aa)	-	-

Gene Model

Click here to download ENSSDUG00000007530's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000007530's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000007530	-	75	30.208	ENSSDUG00000017954	ddx5	66	30.208
ENSSDUG00000007530	-	69	34.985	ENSSDUG00000009075	DDX39A	99	34.985
ENSSDUG00000007530	-	71	32.222	ENSSDUG00000020428	-	56	31.989
ENSSDUG00000007530	-	69	43.333	ENSSDUG00000012334	ddx1	58	43.333
ENSSDUG00000007530	-	75	39.247	ENSSDUG00000004913	eif4a1b	92	39.247
ENSSDUG00000007530	-	85	35.000	ENSSDUG00000020224	ddx39aa	96	34.670
ENSSDUG00000007530	-	74	30.159	ENSSDUG00000008456	fam193b	60	30.159
ENSSDUG00000007530	-	71	40.741	ENSSDUG00000004279	-	64	30.808
ENSSDUG00000007530	-	76	31.643	ENSSDUG00000022459	ddx23	57	31.643
ENSSDUG00000007530	-	71	35.714	ENSSDUG00000000334	ddx19	77	35.519
ENSSDUG00000007530	-	71	40.741	ENSSDUG00000013166	-	60	30.788
ENSSDUG00000007530	-	72	30.278	ENSSDUG00000018855	ddx27	50	30.278
ENSSDUG00000007530	-	96	88.298	ENSSDUG00000009713	ddx61	99	86.749
ENSSDUG00000007530	-	79	30.479	ENSSDUG00000009696	ddx49	81	30.479
ENSSDUG00000007530	-	79	34.171	ENSSDUG00000015980	ddx20	52	34.171
ENSSDUG00000007530	-	77	37.302	ENSSDUG00000021512	eif4a3	92	37.302
ENSSDUG00000007530	-	78	35.492	ENSSDUG00000011557	ddx39b	95	35.071
ENSSDUG00000007530	-	64	37.705	ENSSDUG00000022015	ddx4	56	30.939
ENSSDUG00000007530	-	75	40.054	ENSSDUG00000010103	eif4a2	90	40.054
ENSSDUG00000007530	-	77	31.783	ENSSDUG00000018110	ddx47	73	31.783
ENSSDUG00000007530	-	68	32.022	ENSSDUG00000023568	ddx55	59	32.022
ENSSDUG00000007530	-	75	30.319	ENSSDUG00000007138	kif14	58	30.319
ENSSDUG00000007530	-	97	82.328	ENSSDUG00000019695	ddx6	99	82.573
ENSSDUG00000007530	-	72	31.233	ENSSDUG00000019456	DDX5	57	31.233
ENSSDUG00000007530	-	71	32.500	ENSSDUG00000016136	-	72	32.500
ENSSDUG00000007530	-	74	35.714	ENSSDUG00000003930	zgc:193690	82	35.714
ENSSDUG00000007530	-	70	32.203	ENSSDUG00000020120	ddx43	53	31.510

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000007530	-	77	98.400	ENSAPOG00000023627	-	95	98.400	Acanthochromis_polyacanthus
ENSSDUG00000007530	-	98	86.639	ENSAPOG00000014829	ddx61	98	86.639	Acanthochromis_polyacanthus
ENSSDUG00000007530	-	100	89.796	ENSACIG00000018355	-	100	89.796	Amphilophus_citrinellus
ENSSDUG00000007530	-	100	97.143	ENSAOCG00000006269	-	100	97.143	Amphiprion_ocellaris
ENSSDUG00000007530	-	98	87.683	ENSAOCG00000007627	ddx61	98	87.683	Amphiprion_ocellaris
ENSSDUG00000007530	-	100	97.143	ENSAPEG00000021368	-	100	97.143	Amphiprion_percula
ENSSDUG00000007530	-	100	97.143	ENSAPEG00000020642	-	100	97.143	Amphiprion_percula
ENSSDUG00000007530	-	98	87.683	ENSAPEG00000007293	ddx61	98	87.683	Amphiprion_percula
ENSSDUG00000007530	-	100	95.918	ENSATEG00000005424	-	100	95.918	Anabas_testudineus
ENSSDUG00000007530	-	97	87.553	ENSATEG00000011302	ddx61	98	87.553	Anabas_testudineus
ENSSDUG00000007530	-	98	86.749	ENSACLG00000027620	ddx61	99	86.749	Astatotilapia_calliptera
ENSSDUG00000007530	-	100	96.531	ENSACLG00000003260	-	100	96.531	Astatotilapia_calliptera
ENSSDUG00000007530	-	99	87.273	ENSAMXG00000033980	-	100	87.273	Astyanax_mexicanus
ENSSDUG00000007530	-	97	87.002	ENSAMXG00000032542	ddx61	99	86.242	Astyanax_mexicanus
ENSSDUG00000007530	-	100	95.510	ENSCSEG00000009893	-	100	95.510	Cynoglossus_semilaevis
ENSSDUG00000007530	-	100	92.041	ENSCVAG00000011006	-	100	92.041	Cyprinodon_variegatus
ENSSDUG00000007530	-	99	84.836	ENSDARG00000018425	ddx61	99	84.836	Danio_rerio
ENSSDUG00000007530	-	98	88.613	ENSELUG00000020545	ddx61	99	88.613	Esox_lucius
ENSSDUG00000007530	-	99	90.020	ENSELUG00000022538	-	99	90.020	Esox_lucius
ENSSDUG00000007530	-	100	92.449	ENSFHEG00000015487	-	100	92.449	Fundulus_heteroclitus
ENSSDUG00000007530	-	96	88.655	ENSGMOG00000013762	ddx61	99	87.967	Gadus_morhua
ENSSDUG00000007530	-	66	88.110	ENSGMOG00000003561	-	100	88.788	Gadus_morhua
ENSSDUG00000007530	-	100	91.853	ENSGAFG00000015865	-	100	91.853	Gambusia_affinis
ENSSDUG00000007530	-	98	85.020	ENSGACG00000003401	ddx61	100	85.020	Gasterosteus_aculeatus
ENSSDUG00000007530	-	99	95.868	ENSGACG00000002413	-	100	95.868	Gasterosteus_aculeatus
ENSSDUG00000007530	-	100	96.531	ENSHBUG00000017033	-	100	96.531	Haplochromis_burtoni
ENSSDUG00000007530	-	98	86.957	ENSHBUG00000017832	ddx61	99	86.957	Haplochromis_burtoni
ENSSDUG00000007530	-	100	91.020	ENSHCOG00000012238	-	100	91.020	Hippocampus_comes
ENSSDUG00000007530	-	97	84.244	ENSHCOG00000008184	ddx61	97	84.244	Hippocampus_comes
ENSSDUG00000007530	-	96	86.141	ENSIPUG00000012823	DDX6	99	84.855	Ictalurus_punctatus
ENSSDUG00000007530	-	96	87.949	ENSIPUG00000008367	-	100	86.392	Ictalurus_punctatus
ENSSDUG00000007530	-	100	94.898	ENSKMAG00000007213	-	100	94.898	Kryptolebias_marmoratus
ENSSDUG00000007530	-	97	88.421	ENSLBEG00000001740	ddx61	98	88.421	Labrus_bergylta
ENSSDUG00000007530	-	100	95.089	ENSLBEG00000016890	-	100	95.089	Labrus_bergylta
ENSSDUG00000007530	-	97	84.058	ENSLACG00000015214	ddx61	100	84.058	Latimeria_chalumnae
ENSSDUG00000007530	-	97	51.494	ENSLOCG00000004352	ddx61	97	51.494	Lepisosteus_oculatus
ENSSDUG00000007530	-	100	96.939	ENSMAMG00000005559	-	100	96.939	Mastacembelus_armatus
ENSSDUG00000007530	-	97	87.605	ENSMAMG00000005321	ddx61	97	87.605	Mastacembelus_armatus
ENSSDUG00000007530	-	100	96.531	ENSMZEG00005026268	-	100	96.531	Maylandia_zebra
ENSSDUG00000007530	-	98	86.957	ENSMZEG00005003556	ddx61	99	86.957	Maylandia_zebra
ENSSDUG00000007530	-	100	96.825	ENSMMOG00000013694	-	100	96.825	Mola_mola
ENSSDUG00000007530	-	96	86.383	ENSMMOG00000007415	ddx61	97	86.383	Mola_mola
ENSSDUG00000007530	-	72	76.487	ENSMMOG00000008825	-	92	76.487	Mola_mola
ENSSDUG00000007530	-	100	95.714	ENSMALG00000013817	-	100	95.714	Monopterus_albus
ENSSDUG00000007530	-	97	75.833	ENSMALG00000013776	ddx61	96	75.833	Monopterus_albus
ENSSDUG00000007530	-	100	90.000	ENSNBRG00000015075	-	100	90.000	Neolamprologus_brichardi
ENSSDUG00000007530	-	98	80.208	ENSNBRG00000015800	ddx61	99	80.208	Neolamprologus_brichardi
ENSSDUG00000007530	-	100	96.735	ENSONIG00000013748	-	100	96.735	Oreochromis_niloticus
ENSSDUG00000007530	-	98	87.265	ENSONIG00000011418	ddx61	99	87.265	Oreochromis_niloticus
ENSSDUG00000007530	-	100	93.878	ENSORLG00000009178	-	100	93.878	Oryzias_latipes
ENSSDUG00000007530	-	100	93.878	ENSORLG00020015515	-	100	93.878	Oryzias_latipes_hni
ENSSDUG00000007530	-	100	93.673	ENSORLG00015006764	-	100	93.673	Oryzias_latipes_hsok
ENSSDUG00000007530	-	96	96.226	ENSOMEG00000022326	-	99	96.226	Oryzias_melastigma
ENSSDUG00000007530	-	97	90.147	ENSPKIG00000024264	ddx61	98	89.627	Paramormyrops_kingsleyae
ENSSDUG00000007530	-	100	83.130	ENSPMGG00000013355	-	100	83.130	Periophthalmus_magnuspinnatus
ENSSDUG00000007530	-	100	92.449	ENSPFOG00000005750	-	100	92.449	Poecilia_formosa
ENSSDUG00000007530	-	100	92.449	ENSPLAG00000000403	-	100	92.449	Poecilia_latipinna
ENSSDUG00000007530	-	100	92.245	ENSPMEG00000023737	-	100	92.245	Poecilia_mexicana
ENSSDUG00000007530	-	100	96.531	ENSPNYG00000003986	-	100	96.531	Pundamilia_nyererei
ENSSDUG00000007530	-	98	80.769	ENSPNYG00000015045	ddx61	99	80.769	Pundamilia_nyererei
ENSSDUG00000007530	-	97	87.002	ENSPNAG00000024072	ddx61	99	87.002	Pygocentrus_nattereri
ENSSDUG00000007530	-	99	88.641	ENSPNAG00000008742	-	100	88.641	Pygocentrus_nattereri
ENSSDUG00000007530	-	96	89.263	ENSSFOG00015021404	ddx61	99	87.576	Scleropages_formosus
ENSSDUG00000007530	-	96	87.447	ENSSMAG00000006591	ddx61	97	86.765	Scophthalmus_maximus
ENSSDUG00000007530	-	100	95.714	ENSSMAG00000001793	-	100	95.714	Scophthalmus_maximus
ENSSDUG00000007530	-	100	100.000	ENSSLDG00000007608	-	100	100.000	Seriola_lalandi_dorsalis
ENSSDUG00000007530	-	96	88.298	ENSSLDG00000000132	ddx61	99	86.749	Seriola_lalandi_dorsalis
ENSSDUG00000007530	-	100	98.163	ENSSPAG00000013878	-	100	98.163	Stegastes_partitus
ENSSDUG00000007530	-	96	88.913	ENSSPAG00000001578	ddx61	98	87.866	Stegastes_partitus
ENSSDUG00000007530	-	99	92.229	ENSTRUG00000012432	-	99	92.229	Takifugu_rubripes
ENSSDUG00000007530	-	98	92.100	ENSTNIG00000003560	-	100	92.100	Tetraodon_nigroviridis
ENSSDUG00000007530	-	100	91.855	ENSXCOG00000001406	-	100	91.855	Xiphophorus_couchianus
ENSSDUG00000007530	-	100	92.261	ENSXMAG00000016090	-	100	92.261	Xiphophorus_maculatus