EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000007567 (Gene tree)
Gene ID: 111218612
Gene Symbol: rnaseh2b
Alias: zgc:56602
Full Name: ribonuclease H2 subunit B
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 4793 bases
Position: chrBDQW01000052.1:15870368-15875160
Accession: 111218612
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000010339	RNase_H2-Ydr279	PF09468.10	2.6e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000010532	-	1301	XM_022740989	ENSSDUP00000010339	306 (aa)	XP_022596710	UPI000BBE3531

Gene Model

Click here to download ENSSDUG00000007567's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03030	DNA replication	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000007567's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000007567	rnaseh2b	87	53.731	ENSG00000136104	RNASEH2B	96	53.137	Homo_sapiens
ENSSDUG00000007567	rnaseh2b	100	90.850	ENSAPOG00000010496	rnaseh2b	100	90.850	Acanthochromis_polyacanthus
ENSSDUG00000007567	rnaseh2b	90	51.429	ENSAMEG00000012040	RNASEH2B	95	51.429	Ailuropoda_melanoleuca
ENSSDUG00000007567	rnaseh2b	100	74.183	ENSACIG00000021991	rnaseh2b	97	80.000	Amphilophus_citrinellus
ENSSDUG00000007567	rnaseh2b	100	90.523	ENSAOCG00000013398	rnaseh2b	100	90.523	Amphiprion_ocellaris
ENSSDUG00000007567	rnaseh2b	100	90.196	ENSAPEG00000006033	rnaseh2b	100	90.196	Amphiprion_percula
ENSSDUG00000007567	rnaseh2b	100	89.869	ENSATEG00000008370	rnaseh2b	100	89.869	Anabas_testudineus
ENSSDUG00000007567	rnaseh2b	83	66.148	ENSAPLG00000008955	RNASEH2B	99	66.176	Anas_platyrhynchos
ENSSDUG00000007567	rnaseh2b	93	58.276	ENSACAG00000011679	RNASEH2B	97	58.276	Anolis_carolinensis
ENSSDUG00000007567	rnaseh2b	90	52.347	ENSANAG00000020662	RNASEH2B	89	52.347	Aotus_nancymaae
ENSSDUG00000007567	rnaseh2b	100	84.314	ENSACLG00000000467	rnaseh2b	100	84.314	Astatotilapia_calliptera
ENSSDUG00000007567	rnaseh2b	99	70.261	ENSAMXG00000014351	rnaseh2b	99	70.261	Astyanax_mexicanus
ENSSDUG00000007567	rnaseh2b	90	51.254	ENSBTAG00000020149	RNASEH2B	90	51.254	Bos_taurus
ENSSDUG00000007567	rnaseh2b	87	53.008	ENSCJAG00000008585	-	88	53.008	Callithrix_jacchus
ENSSDUG00000007567	rnaseh2b	73	47.297	ENSCJAG00000003822	-	82	47.297	Callithrix_jacchus
ENSSDUG00000007567	rnaseh2b	98	48.366	ENSCAFG00000004295	RNASEH2B	93	48.366	Canis_familiaris
ENSSDUG00000007567	rnaseh2b	90	51.264	ENSCAFG00020000250	RNASEH2B	90	51.264	Canis_lupus_dingo
ENSSDUG00000007567	rnaseh2b	90	51.636	ENSCHIG00000018220	RNASEH2B	90	51.636	Capra_hircus
ENSSDUG00000007567	rnaseh2b	77	48.305	ENSCHIG00000012982	-	83	48.305	Capra_hircus
ENSSDUG00000007567	rnaseh2b	90	51.264	ENSTSYG00000009176	-	90	51.264	Carlito_syrichta
ENSSDUG00000007567	rnaseh2b	90	43.841	ENSTSYG00000031177	-	90	43.841	Carlito_syrichta
ENSSDUG00000007567	rnaseh2b	90	43.321	ENSCAPG00000009978	RNASEH2B	94	43.321	Cavia_aperea
ENSSDUG00000007567	rnaseh2b	90	48.921	ENSCPOG00000032527	RNASEH2B	89	48.921	Cavia_porcellus
ENSSDUG00000007567	rnaseh2b	90	52.364	ENSCCAG00000026979	RNASEH2B	91	52.364	Cebus_capucinus
ENSSDUG00000007567	rnaseh2b	88	52.593	ENSCATG00000031336	RNASEH2B	76	52.593	Cercocebus_atys
ENSSDUG00000007567	rnaseh2b	90	53.069	ENSCLAG00000003517	RNASEH2B	76	53.069	Chinchilla_lanigera
ENSSDUG00000007567	rnaseh2b	89	51.636	ENSCSAG00000017701	RNASEH2B	83	51.636	Chlorocebus_sabaeus
ENSSDUG00000007567	rnaseh2b	95	41.837	ENSCHOG00000013688	RNASEH2B	95	43.197	Choloepus_hoffmanni
ENSSDUG00000007567	rnaseh2b	99	61.688	ENSCPBG00000008684	RNASEH2B	95	61.688	Chrysemys_picta_bellii
ENSSDUG00000007567	rnaseh2b	88	35.943	ENSCING00000016454	-	90	35.943	Ciona_intestinalis
ENSSDUG00000007567	rnaseh2b	90	51.786	ENSCANG00000041511	-	89	51.786	Colobus_angolensis_palliatus
ENSSDUG00000007567	rnaseh2b	90	53.069	ENSCGRG00001000611	Rnaseh2b	90	53.430	Cricetulus_griseus_chok1gshd
ENSSDUG00000007567	rnaseh2b	90	53.069	ENSCGRG00000006077	Rnaseh2b	90	53.430	Cricetulus_griseus_crigri
ENSSDUG00000007567	rnaseh2b	100	83.660	ENSCSEG00000004910	rnaseh2b	100	83.660	Cynoglossus_semilaevis
ENSSDUG00000007567	rnaseh2b	100	83.333	ENSCVAG00000005212	rnaseh2b	100	83.333	Cyprinodon_variegatus
ENSSDUG00000007567	rnaseh2b	99	72.222	ENSDARG00000005128	rnaseh2b	99	72.222	Danio_rerio
ENSSDUG00000007567	rnaseh2b	87	50.929	ENSDNOG00000049666	-	87	50.929	Dasypus_novemcinctus
ENSSDUG00000007567	rnaseh2b	87	48.689	ENSDNOG00000034290	-	86	48.689	Dasypus_novemcinctus
ENSSDUG00000007567	rnaseh2b	99	49.342	ENSDORG00000010708	Rnaseh2b	98	49.342	Dipodomys_ordii
ENSSDUG00000007567	rnaseh2b	83	39.844	ENSEBUG00000005965	rnaseh2b	97	39.844	Eptatretus_burgeri
ENSSDUG00000007567	rnaseh2b	90	52.708	ENSEASG00005017323	RNASEH2B	89	52.708	Equus_asinus_asinus
ENSSDUG00000007567	rnaseh2b	90	53.069	ENSECAG00000014262	RNASEH2B	89	53.069	Equus_caballus
ENSSDUG00000007567	rnaseh2b	100	78.176	ENSELUG00000019560	rnaseh2b	100	78.176	Esox_lucius
ENSSDUG00000007567	rnaseh2b	88	50.370	ENSFCAG00000014257	RNASEH2B	84	50.370	Felis_catus
ENSSDUG00000007567	rnaseh2b	90	64.029	ENSFALG00000008435	RNASEH2B	94	64.029	Ficedula_albicollis
ENSSDUG00000007567	rnaseh2b	87	51.866	ENSFDAG00000009920	RNASEH2B	93	51.866	Fukomys_damarensis
ENSSDUG00000007567	rnaseh2b	100	85.948	ENSFHEG00000012160	rnaseh2b	100	85.948	Fundulus_heteroclitus
ENSSDUG00000007567	rnaseh2b	100	70.513	ENSGMOG00000016830	rnaseh2b	100	70.513	Gadus_morhua
ENSSDUG00000007567	rnaseh2b	95	60.544	ENSGALG00000017015	RNASEH2B	100	60.841	Gallus_gallus
ENSSDUG00000007567	rnaseh2b	100	85.294	ENSGAFG00000021222	rnaseh2b	100	85.294	Gambusia_affinis
ENSSDUG00000007567	rnaseh2b	100	82.051	ENSGACG00000002821	rnaseh2b	100	82.051	Gasterosteus_aculeatus
ENSSDUG00000007567	rnaseh2b	91	64.516	ENSGAGG00000014722	RNASEH2B	99	64.516	Gopherus_agassizii
ENSSDUG00000007567	rnaseh2b	87	53.137	ENSGGOG00000001044	RNASEH2B	87	53.137	Gorilla_gorilla
ENSSDUG00000007567	rnaseh2b	100	84.967	ENSHBUG00000006049	rnaseh2b	100	84.967	Haplochromis_burtoni
ENSSDUG00000007567	rnaseh2b	87	52.239	ENSHGLG00100015953	RNASEH2B	91	52.239	Heterocephalus_glaber_male
ENSSDUG00000007567	rnaseh2b	100	76.299	ENSHCOG00000003318	rnaseh2b	100	76.299	Hippocampus_comes
ENSSDUG00000007567	rnaseh2b	100	74.919	ENSIPUG00000023815	rnaseh2b	100	74.919	Ictalurus_punctatus
ENSSDUG00000007567	rnaseh2b	90	52.174	ENSSTOG00000015126	RNASEH2B	94	52.174	Ictidomys_tridecemlineatus
ENSSDUG00000007567	rnaseh2b	87	52.985	ENSJJAG00000013335	Rnaseh2b	90	52.985	Jaculus_jaculus
ENSSDUG00000007567	rnaseh2b	100	85.948	ENSKMAG00000002198	rnaseh2b	100	85.948	Kryptolebias_marmoratus
ENSSDUG00000007567	rnaseh2b	100	86.601	ENSLBEG00000019331	rnaseh2b	100	86.601	Labrus_bergylta
ENSSDUG00000007567	rnaseh2b	68	65.566	ENSLACG00000010782	RNASEH2B	92	65.351	Latimeria_chalumnae
ENSSDUG00000007567	rnaseh2b	100	71.661	ENSLOCG00000009296	rnaseh2b	100	71.661	Lepisosteus_oculatus
ENSSDUG00000007567	rnaseh2b	90	50.542	ENSLAFG00000030158	RNASEH2B	90	50.542	Loxodonta_africana
ENSSDUG00000007567	rnaseh2b	90	52.347	ENSMFAG00000038464	-	89	52.347	Macaca_fascicularis
ENSSDUG00000007567	rnaseh2b	90	48.014	ENSMMUG00000021746	RNASEH2B	88	48.014	Macaca_mulatta
ENSSDUG00000007567	rnaseh2b	90	52.347	ENSMNEG00000030580	RNASEH2B	89	52.347	Macaca_nemestrina
ENSSDUG00000007567	rnaseh2b	90	51.786	ENSMLEG00000043911	-	89	51.786	Mandrillus_leucophaeus
ENSSDUG00000007567	rnaseh2b	100	90.196	ENSMAMG00000017109	rnaseh2b	100	90.196	Mastacembelus_armatus
ENSSDUG00000007567	rnaseh2b	100	79.412	ENSMZEG00005021926	rnaseh2b	100	79.739	Maylandia_zebra
ENSSDUG00000007567	rnaseh2b	85	64.015	ENSMGAG00000015025	RNASEH2B	97	64.158	Meleagris_gallopavo
ENSSDUG00000007567	rnaseh2b	90	51.986	ENSMAUG00000016520	Rnaseh2b	90	52.347	Mesocricetus_auratus
ENSSDUG00000007567	rnaseh2b	87	52.239	ENSMICG00000000528	RNASEH2B	87	52.239	Microcebus_murinus
ENSSDUG00000007567	rnaseh2b	99	82.951	ENSMMOG00000019799	rnaseh2b	100	88.112	Mola_mola
ENSSDUG00000007567	rnaseh2b	98	56.436	ENSMODG00000010775	RNASEH2B	99	56.436	Monodelphis_domestica
ENSSDUG00000007567	rnaseh2b	99	88.525	ENSMALG00000004463	rnaseh2b	100	88.525	Monopterus_albus
ENSSDUG00000007567	rnaseh2b	72	57.207	MGP_CAROLIEiJ_G0019389	Rnaseh2b	81	57.658	Mus_caroli
ENSSDUG00000007567	rnaseh2b	87	54.851	ENSMUSG00000021932	Rnaseh2b	89	53.986	Mus_musculus
ENSSDUG00000007567	rnaseh2b	92	42.462	MGP_PahariEiJ_G0030407	-	93	42.462	Mus_pahari
ENSSDUG00000007567	rnaseh2b	71	48.165	ENSMPUG00000018010	RNASEH2B	91	48.165	Mustela_putorius_furo
ENSSDUG00000007567	rnaseh2b	90	54.122	ENSMLUG00000004065	-	89	54.122	Myotis_lucifugus
ENSSDUG00000007567	rnaseh2b	100	83.660	ENSNBRG00000003253	rnaseh2b	100	83.660	Neolamprologus_brichardi
ENSSDUG00000007567	rnaseh2b	87	53.137	ENSNLEG00000003804	RNASEH2B	87	53.137	Nomascus_leucogenys
ENSSDUG00000007567	rnaseh2b	91	57.801	ENSMEUG00000003665	RNASEH2B	97	57.801	Notamacropus_eugenii
ENSSDUG00000007567	rnaseh2b	53	49.383	ENSOPRG00000003695	-	51	51.829	Ochotona_princeps
ENSSDUG00000007567	rnaseh2b	69	50.000	ENSODEG00000005412	-	86	50.000	Octodon_degus
ENSSDUG00000007567	rnaseh2b	87	52.985	ENSODEG00000006793	-	87	52.985	Octodon_degus
ENSSDUG00000007567	rnaseh2b	100	84.967	ENSONIG00000006657	rnaseh2b	100	84.967	Oreochromis_niloticus
ENSSDUG00000007567	rnaseh2b	91	58.947	ENSOANG00000015537	RNASEH2B	98	58.947	Ornithorhynchus_anatinus
ENSSDUG00000007567	rnaseh2b	88	49.446	ENSOCUG00000008904	RNASEH2B	85	50.554	Oryctolagus_cuniculus
ENSSDUG00000007567	rnaseh2b	99	79.139	ENSORLG00000011850	rnaseh2b	100	79.139	Oryzias_latipes
ENSSDUG00000007567	rnaseh2b	99	79.470	ENSORLG00020012081	rnaseh2b	100	79.470	Oryzias_latipes_hni
ENSSDUG00000007567	rnaseh2b	99	79.139	ENSORLG00015015468	rnaseh2b	100	79.139	Oryzias_latipes_hsok
ENSSDUG00000007567	rnaseh2b	99	81.788	ENSOMEG00000012441	rnaseh2b	100	81.788	Oryzias_melastigma
ENSSDUG00000007567	rnaseh2b	87	53.137	ENSOGAG00000016486	RNASEH2B	91	53.137	Otolemur_garnettii
ENSSDUG00000007567	rnaseh2b	90	51.636	ENSOARG00000008701	RNASEH2B	93	51.636	Ovis_aries
ENSSDUG00000007567	rnaseh2b	87	53.137	ENSPPAG00000026374	RNASEH2B	93	50.000	Pan_paniscus
ENSSDUG00000007567	rnaseh2b	90	49.822	ENSPPRG00000012450	RNASEH2B	92	49.822	Panthera_pardus
ENSSDUG00000007567	rnaseh2b	87	51.103	ENSPTIG00000013918	RNASEH2B	97	51.103	Panthera_tigris_altaica
ENSSDUG00000007567	rnaseh2b	87	53.137	ENSPTRG00000005886	RNASEH2B	95	55.422	Pan_troglodytes
ENSSDUG00000007567	rnaseh2b	90	51.786	ENSPANG00000022424	-	89	51.786	Papio_anubis
ENSSDUG00000007567	rnaseh2b	100	71.010	ENSPKIG00000013386	rnaseh2b	100	71.010	Paramormyrops_kingsleyae
ENSSDUG00000007567	rnaseh2b	61	57.143	ENSPSIG00000002224	RNASEH2B	88	57.143	Pelodiscus_sinensis
ENSSDUG00000007567	rnaseh2b	66	79.602	ENSPMGG00000010299	rnaseh2b	98	79.602	Periophthalmus_magnuspinnatus
ENSSDUG00000007567	rnaseh2b	87	54.104	ENSPEMG00000019721	Rnaseh2b	87	54.444	Peromyscus_maniculatus_bairdii
ENSSDUG00000007567	rnaseh2b	93	55.749	ENSPCIG00000014535	-	96	55.749	Phascolarctos_cinereus
ENSSDUG00000007567	rnaseh2b	100	85.390	ENSPFOG00000016722	rnaseh2b	100	85.390	Poecilia_formosa
ENSSDUG00000007567	rnaseh2b	100	85.294	ENSPLAG00000011755	rnaseh2b	100	85.294	Poecilia_latipinna
ENSSDUG00000007567	rnaseh2b	100	85.294	ENSPMEG00000002721	rnaseh2b	100	85.294	Poecilia_mexicana
ENSSDUG00000007567	rnaseh2b	100	84.967	ENSPREG00000007737	rnaseh2b	100	84.967	Poecilia_reticulata
ENSSDUG00000007567	rnaseh2b	87	53.137	ENSPPYG00000005378	RNASEH2B	86	53.137	Pongo_abelii
ENSSDUG00000007567	rnaseh2b	87	52.788	ENSPCOG00000026623	RNASEH2B	87	52.788	Propithecus_coquereli
ENSSDUG00000007567	rnaseh2b	79	50.820	ENSPVAG00000000508	RNASEH2B	92	50.820	Pteropus_vampyrus
ENSSDUG00000007567	rnaseh2b	100	84.641	ENSPNYG00000013552	rnaseh2b	100	84.641	Pundamilia_nyererei
ENSSDUG00000007567	rnaseh2b	99	70.915	ENSPNAG00000024825	rnaseh2b	99	70.915	Pygocentrus_nattereri
ENSSDUG00000007567	rnaseh2b	90	51.971	ENSRNOG00000009192	Rnaseh2b	90	51.971	Rattus_norvegicus
ENSSDUG00000007567	rnaseh2b	91	45.907	ENSRBIG00000036017	-	92	45.907	Rhinopithecus_bieti
ENSSDUG00000007567	rnaseh2b	90	51.986	ENSRBIG00000028928	-	89	51.986	Rhinopithecus_bieti
ENSSDUG00000007567	rnaseh2b	73	41.441	ENSRROG00000044915	-	83	42.009	Rhinopithecus_roxellana
ENSSDUG00000007567	rnaseh2b	90	51.986	ENSRROG00000018808	-	89	51.986	Rhinopithecus_roxellana
ENSSDUG00000007567	rnaseh2b	90	52.364	ENSSBOG00000008081	RNASEH2B	96	53.358	Saimiri_boliviensis_boliviensis
ENSSDUG00000007567	rnaseh2b	100	56.774	ENSSHAG00000016190	RNASEH2B	100	57.468	Sarcophilus_harrisii
ENSSDUG00000007567	rnaseh2b	99	73.529	ENSSFOG00015010190	rnaseh2b	100	73.529	Scleropages_formosus
ENSSDUG00000007567	rnaseh2b	100	88.562	ENSSMAG00000001546	rnaseh2b	100	88.562	Scophthalmus_maximus
ENSSDUG00000007567	rnaseh2b	100	95.440	ENSSLDG00000012485	rnaseh2b	100	95.440	Seriola_lalandi_dorsalis
ENSSDUG00000007567	rnaseh2b	85	55.939	ENSSPUG00000006745	-	94	55.939	Sphenodon_punctatus
ENSSDUG00000007567	rnaseh2b	100	90.850	ENSSPAG00000020926	rnaseh2b	100	90.850	Stegastes_partitus
ENSSDUG00000007567	rnaseh2b	87	53.358	ENSSSCG00000024385	RNASEH2B	95	55.691	Sus_scrofa
ENSSDUG00000007567	rnaseh2b	88	65.074	ENSTGUG00000012104	RNASEH2B	99	65.074	Taeniopygia_guttata
ENSSDUG00000007567	rnaseh2b	100	84.641	ENSTRUG00000015098	rnaseh2b	100	84.641	Takifugu_rubripes
ENSSDUG00000007567	rnaseh2b	100	81.169	ENSTNIG00000013861	rnaseh2b	100	81.169	Tetraodon_nigroviridis
ENSSDUG00000007567	rnaseh2b	90	44.964	ENSTTRG00000010761	RNASEH2B	90	45.683	Tursiops_truncatus
ENSSDUG00000007567	rnaseh2b	90	52.347	ENSUAMG00000022849	RNASEH2B	96	53.358	Ursus_americanus
ENSSDUG00000007567	rnaseh2b	90	51.625	ENSUMAG00000018556	RNASEH2B	96	52.612	Ursus_maritimus
ENSSDUG00000007567	rnaseh2b	87	54.478	ENSVPAG00000005679	RNASEH2B	92	54.478	Vicugna_pacos
ENSSDUG00000007567	rnaseh2b	90	52.347	ENSVVUG00000024015	RNASEH2B	83	52.347	Vulpes_vulpes
ENSSDUG00000007567	rnaseh2b	99	58.117	ENSXETG00000020720	rnaseh2b	100	58.117	Xenopus_tropicalis
ENSSDUG00000007567	rnaseh2b	100	82.085	ENSXCOG00000018732	rnaseh2b	100	82.085	Xiphophorus_couchianus
ENSSDUG00000007567	rnaseh2b	100	83.987	ENSXMAG00000022554	rnaseh2b	100	83.987	Xiphophorus_maculatus