EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000007671 (Gene tree)
Gene ID: 111217536
Gene Symbol: EDC3 (1 of many)
Alias: -
Full Name: enhancer of mRNA-decapping protein 3-like
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 20512 bases
Position: chrBDQW01000003.1:10651892-10672403
Accession: 111217536
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000010486	FDF	PF09532.10	6.9e-07	1	1
ENSSDUP00000010486	LSM14	PF12701.7	1.4e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000010681	EDC3 (1 of many)-201	3663	XM_022739452	ENSSDUP00000010486	473 (aa)	XP_022595173	UPI000BBEE4A7

Gene Model

Click here to download ENSSDUG00000007671's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000007671's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000007671	EDC3	100	68.737	ENSSDUG00000021844	edc3	100	68.737

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000007671	EDC3	100	58.949	ENSG00000179151	EDC3	100	77.778	Homo_sapiens
ENSSDUG00000007671	EDC3	100	75.911	ENSAPOG00000008655	EDC3	100	75.911	Acanthochromis_polyacanthus
ENSSDUG00000007671	EDC3	100	69.628	ENSAPOG00000010791	edc3	100	69.628	Acanthochromis_polyacanthus
ENSSDUG00000007671	EDC3	100	59.538	ENSAMEG00000008963	EDC3	100	59.538	Ailuropoda_melanoleuca
ENSSDUG00000007671	EDC3	100	68.116	ENSACIG00000017751	edc3	100	68.116	Amphilophus_citrinellus
ENSSDUG00000007671	EDC3	99	78.586	ENSACIG00000005330	EDC3	99	78.586	Amphilophus_citrinellus
ENSSDUG00000007671	EDC3	100	69.421	ENSAOCG00000005431	edc3	100	69.421	Amphiprion_ocellaris
ENSSDUG00000007671	EDC3	100	82.773	ENSAOCG00000009103	-	100	82.773	Amphiprion_ocellaris
ENSSDUG00000007671	EDC3	100	69.421	ENSAPEG00000000968	edc3	100	69.421	Amphiprion_percula
ENSSDUG00000007671	EDC3	100	82.983	ENSAPEG00000007841	EDC3	100	82.983	Amphiprion_percula
ENSSDUG00000007671	EDC3	100	69.628	ENSATEG00000015505	edc3	100	69.628	Anabas_testudineus
ENSSDUG00000007671	EDC3	100	85.624	ENSATEG00000004205	-	100	85.624	Anabas_testudineus
ENSSDUG00000007671	EDC3	74	70.857	ENSAPLG00000008957	EDC3	76	70.857	Anas_platyrhynchos
ENSSDUG00000007671	EDC3	77	55.335	ENSACAG00000000460	-	100	55.335	Anolis_carolinensis
ENSSDUG00000007671	EDC3	100	59.533	ENSANAG00000024078	EDC3	100	59.533	Aotus_nancymaae
ENSSDUG00000007671	EDC3	100	68.116	ENSACLG00000007232	edc3	100	68.116	Astatotilapia_calliptera
ENSSDUG00000007671	EDC3	99	80.042	ENSACLG00000018776	-	99	80.042	Astatotilapia_calliptera
ENSSDUG00000007671	EDC3	100	66.667	ENSAMXG00000001589	edc3	100	66.667	Astyanax_mexicanus
ENSSDUG00000007671	EDC3	100	59.615	ENSBTAG00000007308	EDC3	100	59.231	Bos_taurus
ENSSDUG00000007671	EDC3	100	60.000	ENSCJAG00000017681	EDC3	100	60.000	Callithrix_jacchus
ENSSDUG00000007671	EDC3	100	59.538	ENSCAFG00000017935	EDC3	100	59.538	Canis_familiaris
ENSSDUG00000007671	EDC3	100	59.538	ENSCAFG00020003909	EDC3	100	59.538	Canis_lupus_dingo
ENSSDUG00000007671	EDC3	100	59.808	ENSCHIG00000023658	EDC3	100	59.423	Capra_hircus
ENSSDUG00000007671	EDC3	100	59.339	ENSTSYG00000004822	EDC3	100	59.339	Carlito_syrichta
ENSSDUG00000007671	EDC3	100	59.339	ENSCPOG00000015595	EDC3	100	59.339	Cavia_porcellus
ENSSDUG00000007671	EDC3	100	59.806	ENSCCAG00000021663	EDC3	100	59.806	Cebus_capucinus
ENSSDUG00000007671	EDC3	100	59.923	ENSCATG00000037511	EDC3	100	59.923	Cercocebus_atys
ENSSDUG00000007671	EDC3	100	60.388	ENSCLAG00000005700	EDC3	100	59.728	Chinchilla_lanigera
ENSSDUG00000007671	EDC3	100	59.923	ENSCSAG00000014239	EDC3	100	59.923	Chlorocebus_sabaeus
ENSSDUG00000007671	EDC3	99	60.352	ENSCPBG00000024239	EDC3	99	60.352	Chrysemys_picta_bellii
ENSSDUG00000007671	EDC3	100	36.346	ENSCING00000022142	-	99	36.346	Ciona_intestinalis
ENSSDUG00000007671	EDC3	100	59.923	ENSCANG00000028699	EDC3	100	59.923	Colobus_angolensis_palliatus
ENSSDUG00000007671	EDC3	100	59.923	ENSCGRG00001013874	Edc3	100	59.923	Cricetulus_griseus_chok1gshd
ENSSDUG00000007671	EDC3	100	59.923	ENSCGRG00000011885	Edc3	100	59.923	Cricetulus_griseus_crigri
ENSSDUG00000007671	EDC3	99	68.607	ENSCSEG00000012996	edc3	99	68.607	Cynoglossus_semilaevis
ENSSDUG00000007671	EDC3	100	68.465	ENSCVAG00000008023	edc3	100	68.465	Cyprinodon_variegatus
ENSSDUG00000007671	EDC3	99	64.047	ENSDARG00000051931	edc3	99	64.694	Danio_rerio
ENSSDUG00000007671	EDC3	100	52.481	ENSDNOG00000030661	EDC3	100	53.179	Dasypus_novemcinctus
ENSSDUG00000007671	EDC3	70	77.778	ENSETEG00000002398	-	64	77.778	Echinops_telfairi
ENSSDUG00000007671	EDC3	100	59.533	ENSEASG00005005071	EDC3	100	59.533	Equus_asinus_asinus
ENSSDUG00000007671	EDC3	100	59.533	ENSECAG00000017994	EDC3	100	59.533	Equus_caballus
ENSSDUG00000007671	EDC3	100	70.921	ENSELUG00000007607	EDC3	100	70.921	Esox_lucius
ENSSDUG00000007671	EDC3	100	66.805	ENSELUG00000005794	edc3	100	66.805	Esox_lucius
ENSSDUG00000007671	EDC3	100	58.755	ENSFCAG00000002014	EDC3	100	58.755	Felis_catus
ENSSDUG00000007671	EDC3	98	57.760	ENSFALG00000004543	EDC3	96	57.760	Ficedula_albicollis
ENSSDUG00000007671	EDC3	100	59.496	ENSFDAG00000012582	EDC3	100	59.496	Fukomys_damarensis
ENSSDUG00000007671	EDC3	100	69.421	ENSFHEG00000009375	edc3	100	69.421	Fundulus_heteroclitus
ENSSDUG00000007671	EDC3	100	70.186	ENSGMOG00000002715	edc3	100	70.186	Gadus_morhua
ENSSDUG00000007671	EDC3	99	60.742	ENSGALG00000040181	EDC3	99	60.742	Gallus_gallus
ENSSDUG00000007671	EDC3	100	68.595	ENSGAFG00000014433	edc3	100	68.595	Gambusia_affinis
ENSSDUG00000007671	EDC3	99	70.138	ENSGACG00000014671	EDC3	99	70.727	Gasterosteus_aculeatus
ENSSDUG00000007671	EDC3	100	68.182	ENSGACG00000009783	edc3	100	68.182	Gasterosteus_aculeatus
ENSSDUG00000007671	EDC3	99	60.547	ENSGAGG00000023477	EDC3	99	60.547	Gopherus_agassizii
ENSSDUG00000007671	EDC3	100	58.949	ENSGGOG00000003552	EDC3	100	58.949	Gorilla_gorilla
ENSSDUG00000007671	EDC3	99	80.255	ENSHBUG00000020817	EDC3	99	80.255	Haplochromis_burtoni
ENSSDUG00000007671	EDC3	100	68.116	ENSHBUG00000003635	edc3	100	68.116	Haplochromis_burtoni
ENSSDUG00000007671	EDC3	100	68.125	ENSHCOG00000016834	edc3	100	68.125	Hippocampus_comes
ENSSDUG00000007671	EDC3	99	66.068	ENSIPUG00000005695	edc3	99	66.068	Ictalurus_punctatus
ENSSDUG00000007671	EDC3	100	59.656	ENSSTOG00000013936	EDC3	100	59.656	Ictidomys_tridecemlineatus
ENSSDUG00000007671	EDC3	100	59.339	ENSJJAG00000008074	Edc3	100	59.339	Jaculus_jaculus
ENSSDUG00000007671	EDC3	100	68.182	ENSKMAG00000001243	edc3	100	68.182	Kryptolebias_marmoratus
ENSSDUG00000007671	EDC3	100	80.761	ENSKMAG00000001987	EDC3	100	80.761	Kryptolebias_marmoratus
ENSSDUG00000007671	EDC3	100	68.323	ENSLBEG00000013435	edc3	99	68.323	Labrus_bergylta
ENSSDUG00000007671	EDC3	100	81.590	ENSLBEG00000017984	EDC3	100	81.590	Labrus_bergylta
ENSSDUG00000007671	EDC3	99	61.776	ENSLACG00000014149	EDC3	99	61.776	Latimeria_chalumnae
ENSSDUG00000007671	EDC3	99	61.355	ENSLOCG00000014625	edc3	99	60.714	Lepisosteus_oculatus
ENSSDUG00000007671	EDC3	100	60.117	ENSLAFG00000002992	EDC3	100	60.117	Loxodonta_africana
ENSSDUG00000007671	EDC3	100	59.730	ENSMFAG00000043074	EDC3	100	59.730	Macaca_fascicularis
ENSSDUG00000007671	EDC3	100	59.730	ENSMMUG00000011071	EDC3	100	59.730	Macaca_mulatta
ENSSDUG00000007671	EDC3	100	59.730	ENSMNEG00000035316	EDC3	100	59.730	Macaca_nemestrina
ENSSDUG00000007671	EDC3	100	59.923	ENSMLEG00000030372	EDC3	100	59.923	Mandrillus_leucophaeus
ENSSDUG00000007671	EDC3	99	85.775	ENSMAMG00000005423	-	99	85.775	Mastacembelus_armatus
ENSSDUG00000007671	EDC3	100	67.495	ENSMAMG00000000505	edc3	100	67.495	Mastacembelus_armatus
ENSSDUG00000007671	EDC3	100	67.909	ENSMZEG00005004892	edc3	100	67.909	Maylandia_zebra
ENSSDUG00000007671	EDC3	99	78.870	ENSMZEG00005005654	EDC3	99	78.870	Maylandia_zebra
ENSSDUG00000007671	EDC3	99	60.547	ENSMGAG00000002617	EDC3	99	60.547	Meleagris_gallopavo
ENSSDUG00000007671	EDC3	100	59.806	ENSMICG00000043190	EDC3	100	59.806	Microcebus_murinus
ENSSDUG00000007671	EDC3	100	59.073	ENSMOCG00000016205	Edc3	100	59.073	Microtus_ochrogaster
ENSSDUG00000007671	EDC3	99	69.023	ENSMMOG00000012278	edc3	99	69.023	Mola_mola
ENSSDUG00000007671	EDC3	99	59.375	ENSMODG00000009442	EDC3	99	59.375	Monodelphis_domestica
ENSSDUG00000007671	EDC3	100	68.944	ENSMALG00000008658	edc3	100	68.944	Monopterus_albus
ENSSDUG00000007671	EDC3	89	73.134	MGP_CAROLIEiJ_G0032280	Edc3	100	73.846	Mus_caroli
ENSSDUG00000007671	EDC3	89	73.134	ENSMUSG00000038957	Edc3	100	73.846	Mus_musculus
ENSSDUG00000007671	EDC3	100	59.961	MGP_PahariEiJ_G0015146	Edc3	100	73.846	Mus_pahari
ENSSDUG00000007671	EDC3	89	73.134	MGP_SPRETEiJ_G0033420	Edc3	100	73.846	Mus_spretus
ENSSDUG00000007671	EDC3	100	59.538	ENSMPUG00000017293	EDC3	100	59.538	Mustela_putorius_furo
ENSSDUG00000007671	EDC3	100	59.961	ENSMLUG00000016382	EDC3	100	59.961	Myotis_lucifugus
ENSSDUG00000007671	EDC3	100	59.302	ENSNGAG00000010923	Edc3	100	59.302	Nannospalax_galili
ENSSDUG00000007671	EDC3	100	67.702	ENSNBRG00000002434	edc3	100	67.702	Neolamprologus_brichardi
ENSSDUG00000007671	EDC3	99	78.958	ENSNBRG00000007881	EDC3	99	78.958	Neolamprologus_brichardi
ENSSDUG00000007671	EDC3	100	51.262	ENSNLEG00000014577	EDC3	100	51.262	Nomascus_leucogenys
ENSSDUG00000007671	EDC3	99	59.687	ENSMEUG00000009077	EDC3	99	59.687	Notamacropus_eugenii
ENSSDUG00000007671	EDC3	86	77.778	ENSOPRG00000009540	-	79	77.778	Ochotona_princeps
ENSSDUG00000007671	EDC3	99	74.074	ENSONIG00000002932	-	99	74.074	Oreochromis_niloticus
ENSSDUG00000007671	EDC3	100	68.323	ENSONIG00000008434	edc3	100	68.323	Oreochromis_niloticus
ENSSDUG00000007671	EDC3	77	56.436	ENSOCUG00000017740	EDC3	86	56.436	Oryctolagus_cuniculus
ENSSDUG00000007671	EDC3	100	66.942	ENSORLG00000004883	edc3	100	66.942	Oryzias_latipes
ENSSDUG00000007671	EDC3	100	78.782	ENSORLG00000014399	-	98	78.782	Oryzias_latipes
ENSSDUG00000007671	EDC3	100	67.355	ENSORLG00020012262	edc3	100	67.355	Oryzias_latipes_hni
ENSSDUG00000007671	EDC3	100	78.571	ENSORLG00020019446	-	100	78.571	Oryzias_latipes_hni
ENSSDUG00000007671	EDC3	100	78.361	ENSORLG00015017635	-	96	78.361	Oryzias_latipes_hsok
ENSSDUG00000007671	EDC3	100	67.355	ENSORLG00015005634	edc3	100	67.355	Oryzias_latipes_hsok
ENSSDUG00000007671	EDC3	100	67.909	ENSOMEG00000014026	edc3	100	67.909	Oryzias_melastigma
ENSSDUG00000007671	EDC3	100	79.832	ENSOMEG00000017354	EDC3	100	79.832	Oryzias_melastigma
ENSSDUG00000007671	EDC3	100	59.423	ENSOGAG00000014441	EDC3	100	59.144	Otolemur_garnettii
ENSSDUG00000007671	EDC3	100	58.925	ENSOARG00000003476	EDC3	100	59.309	Ovis_aries
ENSSDUG00000007671	EDC3	100	58.949	ENSPPAG00000040143	EDC3	100	58.949	Pan_paniscus
ENSSDUG00000007671	EDC3	100	59.345	ENSPPRG00000006257	EDC3	100	59.345	Panthera_pardus
ENSSDUG00000007671	EDC3	100	59.345	ENSPTIG00000017424	EDC3	100	59.345	Panthera_tigris_altaica
ENSSDUG00000007671	EDC3	100	58.949	ENSPTRG00000007279	EDC3	100	58.949	Pan_troglodytes
ENSSDUG00000007671	EDC3	100	59.923	ENSPANG00000015997	EDC3	100	59.923	Papio_anubis
ENSSDUG00000007671	EDC3	100	65.859	ENSPKIG00000019810	EDC3	100	65.859	Paramormyrops_kingsleyae
ENSSDUG00000007671	EDC3	99	65.217	ENSPKIG00000004416	edc3	99	65.217	Paramormyrops_kingsleyae
ENSSDUG00000007671	EDC3	99	54.688	ENSPSIG00000008474	EDC3	99	55.664	Pelodiscus_sinensis
ENSSDUG00000007671	EDC3	100	66.736	ENSPMGG00000007223	edc3	100	66.736	Periophthalmus_magnuspinnatus
ENSSDUG00000007671	EDC3	100	59.339	ENSPEMG00000015260	Edc3	100	59.339	Peromyscus_maniculatus_bairdii
ENSSDUG00000007671	EDC3	99	59.687	ENSPCIG00000006276	EDC3	70	59.687	Phascolarctos_cinereus
ENSSDUG00000007671	EDC3	100	68.802	ENSPFOG00000012204	edc3	100	68.802	Poecilia_formosa
ENSSDUG00000007671	EDC3	100	68.802	ENSPLAG00000014420	edc3	100	68.802	Poecilia_latipinna
ENSSDUG00000007671	EDC3	100	68.802	ENSPMEG00000023289	edc3	100	68.802	Poecilia_mexicana
ENSSDUG00000007671	EDC3	100	68.182	ENSPREG00000016022	edc3	100	68.182	Poecilia_reticulata
ENSSDUG00000007671	EDC3	100	57.977	ENSPPYG00000006642	EDC3	100	57.977	Pongo_abelii
ENSSDUG00000007671	EDC3	86	77.778	ENSPCAG00000002802	EDC3	79	77.778	Procavia_capensis
ENSSDUG00000007671	EDC3	100	59.144	ENSPCOG00000013364	EDC3	100	59.144	Propithecus_coquereli
ENSSDUG00000007671	EDC3	100	59.728	ENSPVAG00000014733	EDC3	100	60.117	Pteropus_vampyrus
ENSSDUG00000007671	EDC3	99	80.255	ENSPNYG00000009669	EDC3	99	80.255	Pundamilia_nyererei
ENSSDUG00000007671	EDC3	100	68.116	ENSPNYG00000021797	edc3	100	68.116	Pundamilia_nyererei
ENSSDUG00000007671	EDC3	100	66.078	ENSPNAG00000019657	edc3	100	66.078	Pygocentrus_nattereri
ENSSDUG00000007671	EDC3	99	59.687	ENSRNOG00000019579	Edc3	99	59.100	Rattus_norvegicus
ENSSDUG00000007671	EDC3	100	60.117	ENSRBIG00000019488	EDC3	100	60.117	Rhinopithecus_bieti
ENSSDUG00000007671	EDC3	100	60.117	ENSRROG00000034959	EDC3	100	60.117	Rhinopithecus_roxellana
ENSSDUG00000007671	EDC3	100	59.806	ENSSBOG00000004896	EDC3	100	59.806	Saimiri_boliviensis_boliviensis
ENSSDUG00000007671	EDC3	99	57.564	ENSSHAG00000015075	EDC3	98	57.564	Sarcophilus_harrisii
ENSSDUG00000007671	EDC3	100	66.799	ENSSFOG00015016939	edc3	100	67.396	Scleropages_formosus
ENSSDUG00000007671	EDC3	100	69.979	ENSSFOG00015002439	edc3	100	70.402	Scleropages_formosus
ENSSDUG00000007671	EDC3	99	87.712	ENSSMAG00000010176	-	99	87.712	Scophthalmus_maximus
ENSSDUG00000007671	EDC3	100	68.737	ENSSMAG00000010695	edc3	100	68.737	Scophthalmus_maximus
ENSSDUG00000007671	EDC3	100	68.737	ENSSLDG00000022046	edc3	100	68.737	Seriola_lalandi_dorsalis
ENSSDUG00000007671	EDC3	79	75.806	ENSSARG00000003907	EDC3	74	75.806	Sorex_araneus
ENSSDUG00000007671	EDC3	99	59.574	ENSSPUG00000008232	EDC3	99	59.574	Sphenodon_punctatus
ENSSDUG00000007671	EDC3	100	84.874	ENSSPAG00000020327	EDC3	100	84.874	Stegastes_partitus
ENSSDUG00000007671	EDC3	100	68.660	ENSSPAG00000010009	edc3	100	68.660	Stegastes_partitus
ENSSDUG00000007671	EDC3	100	63.542	ENSSSCG00000001903	EDC3	100	63.542	Sus_scrofa
ENSSDUG00000007671	EDC3	99	59.690	ENSTGUG00000004007	EDC3	99	59.690	Taeniopygia_guttata
ENSSDUG00000007671	EDC3	100	68.737	ENSTRUG00000017078	edc3	100	68.737	Takifugu_rubripes
ENSSDUG00000007671	EDC3	100	68.041	ENSTNIG00000016047	edc3	100	68.041	Tetraodon_nigroviridis
ENSSDUG00000007671	EDC3	100	60.234	ENSTTRG00000007990	EDC3	100	60.234	Tursiops_truncatus
ENSSDUG00000007671	EDC3	100	59.538	ENSUAMG00000026710	-	100	59.538	Ursus_americanus
ENSSDUG00000007671	EDC3	100	59.538	ENSUMAG00000005006	EDC3	96	59.538	Ursus_maritimus
ENSSDUG00000007671	EDC3	86	70.370	ENSVPAG00000003499	-	79	70.370	Vicugna_pacos
ENSSDUG00000007671	EDC3	100	59.345	ENSVVUG00000018601	EDC3	100	59.345	Vulpes_vulpes
ENSSDUG00000007671	EDC3	74	67.806	ENSXETG00000010622	edc3	99	67.806	Xenopus_tropicalis
ENSSDUG00000007671	EDC3	100	68.388	ENSXMAG00000007377	edc3	100	68.388	Xiphophorus_maculatus