EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000007719 (Gene tree)
Gene ID: 111218020
Gene Symbol: cmss1
Alias: zgc:101814
Full Name: cms1 ribosomal small subunit homolog
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 34045 bases
Position: chrBDQW01000052.1:16187629-16221673
Accession: 111218020
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000010542	CMS1	PF14617.6	2.8e-35	1	1
ENSSDUP00000010535	CMS1	PF14617.6	5.4e-33	1	1
ENSSDUP00000010542	DEAD	PF00270.29	2.3e-07	1	1
ENSSDUP00000010535	DEAD	PF00270.29	2.9e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000010732	-	1512	-	ENSSDUP00000010535	273 (aa)	-	-
ENSSDUT00000010740	-	1492	XM_022740104	ENSSDUP00000010542	288 (aa)	XP_022595825	-

Gene Model

Click here to download ENSSDUG00000007719's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000007719's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000007719	cmss1	100	53.767	ENSG00000184220	CMSS1	98	63.750	Homo_sapiens
ENSSDUG00000007719	cmss1	70	92.118	ENSAPOG00000010604	cmss1	96	78.626	Acanthochromis_polyacanthus
ENSSDUG00000007719	cmss1	88	57.255	ENSAMEG00000004092	CMSS1	97	56.863	Ailuropoda_melanoleuca
ENSSDUG00000007719	cmss1	92	74.340	ENSACIG00000021854	cmss1	98	73.664	Amphilophus_citrinellus
ENSSDUG00000007719	cmss1	100	84.192	ENSAOCG00000013361	cmss1	100	85.567	Amphiprion_ocellaris
ENSSDUG00000007719	cmss1	100	80.412	ENSAPEG00000005829	cmss1	100	83.904	Amphiprion_percula
ENSSDUG00000007719	cmss1	100	82.007	ENSATEG00000008209	cmss1	100	81.661	Anabas_testudineus
ENSSDUG00000007719	cmss1	81	60.776	ENSAPLG00000010542	CMSS1	100	61.207	Anas_platyrhynchos
ENSSDUG00000007719	cmss1	93	57.037	ENSACAG00000011065	CMSS1	85	61.803	Anolis_carolinensis
ENSSDUG00000007719	cmss1	100	52.560	ENSANAG00000023565	CMSS1	100	51.027	Aotus_nancymaae
ENSSDUG00000007719	cmss1	100	78.840	ENSACLG00000027294	cmss1	100	80.887	Astatotilapia_calliptera
ENSSDUG00000007719	cmss1	100	58.844	ENSAMXG00000002046	cmss1	100	59.864	Astyanax_mexicanus
ENSSDUG00000007719	cmss1	100	53.952	ENSBTAG00000013663	CMSS1	100	53.608	Bos_taurus
ENSSDUG00000007719	cmss1	100	54.608	ENSCJAG00000000610	CMSS1	100	52.397	Callithrix_jacchus
ENSSDUG00000007719	cmss1	90	57.088	ENSCAFG00000009230	CMSS1	82	60.262	Canis_familiaris
ENSSDUG00000007719	cmss1	70	62.871	ENSCAFG00020024156	-	63	62.871	Canis_lupus_dingo
ENSSDUG00000007719	cmss1	90	57.088	ENSCAFG00020009464	-	82	60.262	Canis_lupus_dingo
ENSSDUG00000007719	cmss1	90	56.154	ENSCHIG00000013003	CMSS1	82	60.262	Capra_hircus
ENSSDUG00000007719	cmss1	93	55.185	ENSTSYG00000009266	CMSS1	87	60.699	Carlito_syrichta
ENSSDUG00000007719	cmss1	73	52.857	ENSCAPG00000013584	CMSS1	88	56.085	Cavia_aperea
ENSSDUG00000007719	cmss1	100	54.983	ENSCPOG00000014680	CMSS1	100	54.167	Cavia_porcellus
ENSSDUG00000007719	cmss1	100	54.266	ENSCCAG00000034685	CMSS1	100	53.082	Cebus_capucinus
ENSSDUG00000007719	cmss1	100	54.110	ENSCATG00000031980	CMSS1	100	52.203	Cercocebus_atys
ENSSDUG00000007719	cmss1	80	58.515	ENSCLAG00000011241	CMSS1	97	58.952	Chinchilla_lanigera
ENSSDUG00000007719	cmss1	80	60.262	ENSCSAG00000006024	CMSS1	92	59.825	Chlorocebus_sabaeus
ENSSDUG00000007719	cmss1	100	42.361	ENSCHOG00000012098	CMSS1	100	40.972	Choloepus_hoffmanni
ENSSDUG00000007719	cmss1	67	42.857	ENSCING00000014848	-	99	42.781	Ciona_intestinalis
ENSSDUG00000007719	cmss1	100	54.110	ENSCANG00000031337	CMSS1	100	52.203	Colobus_angolensis_palliatus
ENSSDUG00000007719	cmss1	100	53.448	ENSCGRG00001014305	Cmss1	100	51.864	Cricetulus_griseus_chok1gshd
ENSSDUG00000007719	cmss1	92	54.135	ENSCGRG00000006722	Cmss1	88	59.825	Cricetulus_griseus_crigri
ENSSDUG00000007719	cmss1	100	75.510	ENSCSEG00000004958	cmss1	100	75.170	Cynoglossus_semilaevis
ENSSDUG00000007719	cmss1	100	78.966	ENSCVAG00000005039	cmss1	100	76.897	Cyprinodon_variegatus
ENSSDUG00000007719	cmss1	100	62.585	ENSDARG00000112579	cmss1	100	62.329	Danio_rerio
ENSSDUG00000007719	cmss1	84	59.336	ENSDNOG00000040418	CMSS1	82	61.135	Dasypus_novemcinctus
ENSSDUG00000007719	cmss1	100	54.795	ENSDORG00000010461	Cmss1	100	53.265	Dipodomys_ordii
ENSSDUG00000007719	cmss1	81	57.940	ENSEASG00005010966	CMSS1	92	62.871	Equus_asinus_asinus
ENSSDUG00000007719	cmss1	93	53.358	ENSECAG00000015662	CMSS1	99	58.079	Equus_caballus
ENSSDUG00000007719	cmss1	100	39.236	ENSEEUG00000007624	-	100	38.889	Erinaceus_europaeus
ENSSDUG00000007719	cmss1	100	60.526	ENSELUG00000019459	cmss1	100	60.396	Esox_lucius
ENSSDUG00000007719	cmss1	100	55.479	ENSFCAG00000044577	CMSS1	100	53.952	Felis_catus
ENSSDUG00000007719	cmss1	81	60.345	ENSFALG00000005816	CMSS1	97	59.914	Ficedula_albicollis
ENSSDUG00000007719	cmss1	80	60.699	ENSFDAG00000012577	CMSS1	99	61.135	Fukomys_damarensis
ENSSDUG00000007719	cmss1	80	82.328	ENSFHEG00000012008	cmss1	95	81.466	Fundulus_heteroclitus
ENSSDUG00000007719	cmss1	99	67.483	ENSGMOG00000016729	cmss1	100	67.708	Gadus_morhua
ENSSDUG00000007719	cmss1	93	56.343	ENSGALG00000015267	CMSS1	97	56.489	Gallus_gallus
ENSSDUG00000007719	cmss1	93	75.646	ENSGAFG00000021217	cmss1	98	75.188	Gambusia_affinis
ENSSDUG00000007719	cmss1	99	73.077	ENSGACG00000002798	cmss1	100	73.427	Gasterosteus_aculeatus
ENSSDUG00000007719	cmss1	90	55.985	ENSGAGG00000019861	CMSS1	79	64.851	Gopherus_agassizii
ENSSDUG00000007719	cmss1	80	59.825	ENSGGOG00000014125	CMSS1	87	59.389	Gorilla_gorilla
ENSSDUG00000007719	cmss1	100	79.110	ENSHBUG00000008431	cmss1	100	81.164	Haplochromis_burtoni
ENSSDUG00000007719	cmss1	80	61.572	ENSHGLG00000019481	CMSS1	92	61.572	Heterocephalus_glaber_female
ENSSDUG00000007719	cmss1	80	61.572	ENSHGLG00100010314	CMSS1	91	61.572	Heterocephalus_glaber_male
ENSSDUG00000007719	cmss1	100	69.024	ENSHCOG00000003222	cmss1	100	68.896	Hippocampus_comes
ENSSDUG00000007719	cmss1	100	65.172	ENSIPUG00000011591	cmss1	100	62.414	Ictalurus_punctatus
ENSSDUG00000007719	cmss1	100	53.608	ENSSTOG00000019366	CMSS1	100	52.069	Ictidomys_tridecemlineatus
ENSSDUG00000007719	cmss1	100	54.452	ENSJJAG00000014894	Cmss1	90	63.366	Jaculus_jaculus
ENSSDUG00000007719	cmss1	93	66.791	ENSKMAG00000002390	cmss1	98	64.259	Kryptolebias_marmoratus
ENSSDUG00000007719	cmss1	92	71.805	ENSLBEG00000006298	cmss1	98	71.863	Labrus_bergylta
ENSSDUG00000007719	cmss1	80	63.043	ENSLACG00000009293	CMSS1	88	66.832	Latimeria_chalumnae
ENSSDUG00000007719	cmss1	100	57.093	ENSLOCG00000009391	cmss1	100	56.250	Lepisosteus_oculatus
ENSSDUG00000007719	cmss1	80	60.699	ENSLAFG00000017509	CMSS1	99	60.262	Loxodonta_africana
ENSSDUG00000007719	cmss1	100	53.767	ENSMFAG00000045006	CMSS1	100	51.864	Macaca_fascicularis
ENSSDUG00000007719	cmss1	100	53.425	ENSMMUG00000002939	CMSS1	96	59.361	Macaca_mulatta
ENSSDUG00000007719	cmss1	100	53.767	ENSMNEG00000031315	CMSS1	100	51.864	Macaca_nemestrina
ENSSDUG00000007719	cmss1	100	53.767	ENSMLEG00000033660	CMSS1	100	51.864	Mandrillus_leucophaeus
ENSSDUG00000007719	cmss1	100	85.274	ENSMAMG00000017176	cmss1	100	85.274	Mastacembelus_armatus
ENSSDUG00000007719	cmss1	100	78.840	ENSMZEG00005021886	cmss1	100	80.887	Maylandia_zebra
ENSSDUG00000007719	cmss1	80	61.739	ENSMGAG00000014360	CMSS1	89	65.347	Meleagris_gallopavo
ENSSDUG00000007719	cmss1	100	38.966	ENSMAUG00000020609	Cmss1	100	38.621	Mesocricetus_auratus
ENSSDUG00000007719	cmss1	100	55.172	ENSMICG00000048977	CMSS1	100	54.483	Microcebus_murinus
ENSSDUG00000007719	cmss1	100	53.472	ENSMOCG00000021937	Cmss1	100	52.397	Microtus_ochrogaster
ENSSDUG00000007719	cmss1	90	72.308	ENSMMOG00000019794	cmss1	99	71.154	Mola_mola
ENSSDUG00000007719	cmss1	85	58.943	ENSMODG00000002275	CMSS1	85	59.825	Monodelphis_domestica
ENSSDUG00000007719	cmss1	100	82.877	ENSMALG00000004250	cmss1	100	82.131	Monopterus_albus
ENSSDUG00000007719	cmss1	100	55.862	MGP_CAROLIEiJ_G0020824	Cmss1	100	55.172	Mus_caroli
ENSSDUG00000007719	cmss1	100	55.172	ENSMUSG00000022748	Cmss1	100	54.483	Mus_musculus
ENSSDUG00000007719	cmss1	100	54.828	MGP_PahariEiJ_G0016524	Cmss1	100	55.137	Mus_pahari
ENSSDUG00000007719	cmss1	100	54.483	MGP_SPRETEiJ_G0021724	Cmss1	100	54.110	Mus_spretus
ENSSDUG00000007719	cmss1	83	58.750	ENSMPUG00000011324	CMSS1	87	60.088	Mustela_putorius_furo
ENSSDUG00000007719	cmss1	82	59.244	ENSMLUG00000001131	CMSS1	88	59.829	Myotis_lucifugus
ENSSDUG00000007719	cmss1	100	54.296	ENSNGAG00000020316	Cmss1	100	52.921	Nannospalax_galili
ENSSDUG00000007719	cmss1	100	78.498	ENSNBRG00000003095	cmss1	100	80.546	Neolamprologus_brichardi
ENSSDUG00000007719	cmss1	100	54.452	ENSNLEG00000034172	CMSS1	100	52.234	Nomascus_leucogenys
ENSSDUG00000007719	cmss1	80	53.275	ENSMEUG00000014505	CMSS1	89	54.950	Notamacropus_eugenii
ENSSDUG00000007719	cmss1	100	54.639	ENSOPRG00000002986	CMSS1	100	53.125	Ochotona_princeps
ENSSDUG00000007719	cmss1	100	51.736	ENSODEG00000003558	-	100	50.694	Octodon_degus
ENSSDUG00000007719	cmss1	100	55.017	ENSODEG00000005226	-	100	54.514	Octodon_degus
ENSSDUG00000007719	cmss1	100	48.966	ENSODEG00000001853	-	100	45.890	Octodon_degus
ENSSDUG00000007719	cmss1	100	45.517	ENSODEG00000009446	-	100	44.444	Octodon_degus
ENSSDUG00000007719	cmss1	91	81.749	ENSONIG00000006678	cmss1	100	81.369	Oreochromis_niloticus
ENSSDUG00000007719	cmss1	80	59.389	ENSOANG00000007529	CMSS1	87	62.871	Ornithorhynchus_anatinus
ENSSDUG00000007719	cmss1	90	57.471	ENSOCUG00000025366	CMSS1	82	60.699	Oryctolagus_cuniculus
ENSSDUG00000007719	cmss1	100	75.433	ENSORLG00000020340	cmss1	100	75.433	Oryzias_latipes
ENSSDUG00000007719	cmss1	76	72.273	ENSORLG00020012235	cmss1	86	76.355	Oryzias_latipes_hni
ENSSDUG00000007719	cmss1	92	66.914	ENSORLG00015015551	cmss1	99	67.293	Oryzias_latipes_hsok
ENSSDUG00000007719	cmss1	100	75.427	ENSOMEG00000012555	cmss1	100	75.085	Oryzias_melastigma
ENSSDUG00000007719	cmss1	80	58.952	ENSOGAG00000002045	CMSS1	99	59.389	Otolemur_garnettii
ENSSDUG00000007719	cmss1	90	55.939	ENSOARG00000017899	CMSS1	78	60.000	Ovis_aries
ENSSDUG00000007719	cmss1	100	53.287	ENSPPAG00000038515	CMSS1	83	59.389	Pan_paniscus
ENSSDUG00000007719	cmss1	100	56.164	ENSPPRG00000016767	CMSS1	100	53.952	Panthera_pardus
ENSSDUG00000007719	cmss1	100	55.822	ENSPTIG00000018274	CMSS1	100	53.608	Panthera_tigris_altaica
ENSSDUG00000007719	cmss1	100	53.608	ENSPTRG00000015157	CMSS1	92	59.389	Pan_troglodytes
ENSSDUG00000007719	cmss1	80	60.262	ENSPANG00000019980	CMSS1	90	59.825	Papio_anubis
ENSSDUG00000007719	cmss1	96	65.530	ENSPKIG00000012609	cmss1	96	66.540	Paramormyrops_kingsleyae
ENSSDUG00000007719	cmss1	81	60.776	ENSPSIG00000003849	CMSS1	88	65.842	Pelodiscus_sinensis
ENSSDUG00000007719	cmss1	70	82.843	ENSPMGG00000010286	cmss1	88	82.843	Periophthalmus_magnuspinnatus
ENSSDUG00000007719	cmss1	100	53.472	ENSPEMG00000016384	Cmss1	100	53.472	Peromyscus_maniculatus_bairdii
ENSSDUG00000007719	cmss1	71	50.490	ENSPMAG00000001146	cmss1	99	50.739	Petromyzon_marinus
ENSSDUG00000007719	cmss1	82	60.169	ENSPCIG00000015656	CMSS1	77	64.356	Phascolarctos_cinereus
ENSSDUG00000007719	cmss1	100	79.655	ENSPFOG00000016849	cmss1	100	78.276	Poecilia_formosa
ENSSDUG00000007719	cmss1	100	79.310	ENSPLAG00000008323	cmss1	100	77.931	Poecilia_latipinna
ENSSDUG00000007719	cmss1	100	80.690	ENSPMEG00000021020	cmss1	100	79.310	Poecilia_mexicana
ENSSDUG00000007719	cmss1	95	79.783	ENSPREG00000007618	cmss1	94	76.895	Poecilia_reticulata
ENSSDUG00000007719	cmss1	100	53.767	ENSPPYG00000013606	CMSS1	100	51.890	Pongo_abelii
ENSSDUG00000007719	cmss1	100	55.326	ENSPCOG00000020035	CMSS1	100	54.828	Propithecus_coquereli
ENSSDUG00000007719	cmss1	100	45.890	ENSPVAG00000017031	CMSS1	100	45.139	Pteropus_vampyrus
ENSSDUG00000007719	cmss1	96	79.323	ENSPNYG00000013428	cmss1	97	81.579	Pundamilia_nyererei
ENSSDUG00000007719	cmss1	100	63.265	ENSPNAG00000007912	cmss1	100	62.925	Pygocentrus_nattereri
ENSSDUG00000007719	cmss1	84	58.921	ENSRNOG00000027888	Cmss1	89	60.345	Rattus_norvegicus
ENSSDUG00000007719	cmss1	100	53.767	ENSRBIG00000037931	CMSS1	100	51.864	Rhinopithecus_bieti
ENSSDUG00000007719	cmss1	100	53.767	ENSRROG00000042910	CMSS1	100	51.864	Rhinopithecus_roxellana
ENSSDUG00000007719	cmss1	83	58.091	ENSSBOG00000030980	CMSS1	86	59.389	Saimiri_boliviensis_boliviensis
ENSSDUG00000007719	cmss1	70	65.347	ENSSHAG00000009321	CMSS1	80	65.347	Sarcophilus_harrisii
ENSSDUG00000007719	cmss1	100	63.545	ENSSFOG00015001509	cmss1	100	65.424	Scleropages_formosus
ENSSDUG00000007719	cmss1	100	82.818	ENSSMAG00000001653	cmss1	100	83.162	Scophthalmus_maximus
ENSSDUG00000007719	cmss1	99	86.735	ENSSLDG00000012300	cmss1	95	94.760	Seriola_lalandi_dorsalis
ENSSDUG00000007719	cmss1	100	45.734	ENSSARG00000003584	CMSS1	100	44.097	Sorex_araneus
ENSSDUG00000007719	cmss1	80	60.262	ENSSPUG00000003865	CMSS1	89	61.881	Sphenodon_punctatus
ENSSDUG00000007719	cmss1	95	81.818	ENSSPAG00000019182	cmss1	78	80.075	Stegastes_partitus
ENSSDUG00000007719	cmss1	100	54.452	ENSSSCG00000011970	CMSS1	100	52.921	Sus_scrofa
ENSSDUG00000007719	cmss1	81	60.776	ENSTGUG00000013635	CMSS1	100	60.776	Taeniopygia_guttata
ENSSDUG00000007719	cmss1	100	75.694	ENSTRUG00000015265	cmss1	100	76.042	Takifugu_rubripes
ENSSDUG00000007719	cmss1	94	69.259	ENSTNIG00000002880	cmss1	94	70.229	Tetraodon_nigroviridis
ENSSDUG00000007719	cmss1	100	38.542	ENSTBEG00000016722	CMSS1	100	38.194	Tupaia_belangeri
ENSSDUG00000007719	cmss1	100	53.265	ENSTTRG00000001562	CMSS1	100	51.736	Tursiops_truncatus
ENSSDUG00000007719	cmss1	97	54.355	ENSUAMG00000024209	CMSS1	95	60.776	Ursus_americanus
ENSSDUG00000007719	cmss1	95	55.839	ENSUMAG00000001983	CMSS1	87	60.699	Ursus_maritimus
ENSSDUG00000007719	cmss1	100	42.361	ENSVPAG00000000263	CMSS1	57	62.500	Vicugna_pacos
ENSSDUG00000007719	cmss1	70	63.861	ENSVVUG00000007776	-	80	63.861	Vulpes_vulpes
ENSSDUG00000007719	cmss1	83	60.166	ENSVVUG00000021647	-	92	60.262	Vulpes_vulpes
ENSSDUG00000007719	cmss1	100	53.448	ENSXETG00000011858	cmss1	100	51.389	Xenopus_tropicalis
ENSSDUG00000007719	cmss1	95	75.090	ENSXCOG00000018724	cmss1	96	69.831	Xiphophorus_couchianus
ENSSDUG00000007719	cmss1	93	75.465	ENSXMAG00000011243	cmss1	99	71.223	Xiphophorus_maculatus