EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000007726 (Gene tree)
Gene ID: 111232745
Gene Symbol: npm1b
Alias: npm4
Full Name: nucleophosmin-like
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 15597 bases
Position: chrBDQW01000331.1:11221676-11237272
Accession: 111232745
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000010546	Nucleoplasmin	PF03066.15	4.4e-39	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000010743	-	2664	XM_022760385	ENSSDUP00000010546	298 (aa)	XP_022616106	UPI000BBF25B8

Gene Model

Click here to download ENSSDUG00000007726's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000007726's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000007726	npm1b	95	42.333	ENSSDUG00000015609	npm1a	96	41.503

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000007726	npm1b	100	86.913	ENSAPOG00000004268	npm1b	100	87.248	Acanthochromis_polyacanthus
ENSSDUG00000007726	npm1b	100	87.919	ENSAOCG00000012549	npm1b	100	86.913	Amphiprion_ocellaris
ENSSDUG00000007726	npm1b	100	87.919	ENSAPEG00000000868	npm1b	100	86.242	Amphiprion_percula
ENSSDUG00000007726	npm1b	100	88.294	ENSATEG00000006254	npm1b	100	88.294	Anabas_testudineus
ENSSDUG00000007726	npm1b	95	43.537	ENSACAG00000015626	-	96	43.771	Anolis_carolinensis
ENSSDUG00000007726	npm1b	98	65.217	ENSAMXG00000042148	npm1b	99	63.636	Astyanax_mexicanus
ENSSDUG00000007726	npm1b	55	40.237	ENSCAFG00000023359	-	65	40.237	Canis_familiaris
ENSSDUG00000007726	npm1b	96	46.154	ENSCPBG00000021221	-	58	48.311	Chrysemys_picta_bellii
ENSSDUG00000007726	npm1b	100	81.667	ENSCSEG00000004530	npm1b	100	82.000	Cynoglossus_semilaevis
ENSSDUG00000007726	npm1b	100	77.258	ENSCVAG00000013016	npm1b	100	79.264	Cyprinodon_variegatus
ENSSDUG00000007726	npm1b	99	67.442	ENSDARG00000037675	npm1b	99	67.752	Danio_rerio
ENSSDUG00000007726	npm1b	99	65.132	ENSELUG00000022123	npm1b	99	65.132	Esox_lucius
ENSSDUG00000007726	npm1b	94	45.833	ENSFALG00000003320	-	94	46.875	Ficedula_albicollis
ENSSDUG00000007726	npm1b	100	77.741	ENSFHEG00000020794	npm1b	100	79.070	Fundulus_heteroclitus
ENSSDUG00000007726	npm1b	98	64.527	ENSGMOG00000002689	npm1b	100	66.892	Gadus_morhua
ENSSDUG00000007726	npm1b	98	45.425	ENSGALG00000002197	-	73	46.405	Gallus_gallus
ENSSDUG00000007726	npm1b	100	78.188	ENSGAFG00000017709	npm1b	100	78.188	Gambusia_affinis
ENSSDUG00000007726	npm1b	98	82.594	ENSGACG00000016706	npm1b	100	84.983	Gasterosteus_aculeatus
ENSSDUG00000007726	npm1b	95	46.128	ENSGAGG00000020250	-	96	47.811	Gopherus_agassizii
ENSSDUG00000007726	npm1b	100	82.609	ENSHBUG00000019903	npm1b	95	85.284	Haplochromis_burtoni
ENSSDUG00000007726	npm1b	100	78.333	ENSHCOG00000003895	npm1b	100	78.667	Hippocampus_comes
ENSSDUG00000007726	npm1b	99	61.333	ENSIPUG00000020165	npm1b	99	61.889	Ictalurus_punctatus
ENSSDUG00000007726	npm1b	99	84.014	ENSKMAG00000008260	npm1b	99	85.034	Kryptolebias_marmoratus
ENSSDUG00000007726	npm1b	64	87.435	ENSLBEG00000001304	-	94	87.958	Labrus_bergylta
ENSSDUG00000007726	npm1b	94	42.140	ENSLACG00000001779	-	100	41.156	Latimeria_chalumnae
ENSSDUG00000007726	npm1b	93	49.492	ENSLOCG00000001942	npm1b	100	49.662	Lepisosteus_oculatus
ENSSDUG00000007726	npm1b	72	82.192	ENSMAMG00000015335	npm1b	100	82.192	Mastacembelus_armatus
ENSSDUG00000007726	npm1b	93	45.614	ENSMGAG00000001591	-	100	46.667	Meleagris_gallopavo
ENSSDUG00000007726	npm1b	81	90.909	ENSMALG00000015383	npm1b	100	90.909	Monopterus_albus
ENSSDUG00000007726	npm1b	99	73.422	ENSONIG00000001397	npm1b	98	78.033	Oreochromis_niloticus
ENSSDUG00000007726	npm1b	100	69.128	ENSOMEG00000003414	npm1b	100	69.128	Oryzias_melastigma
ENSSDUG00000007726	npm1b	99	60.443	ENSPKIG00000020050	npm1b	99	60.759	Paramormyrops_kingsleyae
ENSSDUG00000007726	npm1b	96	46.644	ENSPSIG00000011204	-	92	46.644	Pelodiscus_sinensis
ENSSDUG00000007726	npm1b	93	37.370	ENSPMAG00000004930	npm1b	99	36.332	Petromyzon_marinus
ENSSDUG00000007726	npm1b	100	78.595	ENSPFOG00000018357	npm1b	100	78.595	Poecilia_formosa
ENSSDUG00000007726	npm1b	98	66.443	ENSPNAG00000005498	npm1b	99	67.114	Pygocentrus_nattereri
ENSSDUG00000007726	npm1b	99	57.718	ENSSFOG00015005064	npm1b	100	58.054	Scleropages_formosus
ENSSDUG00000007726	npm1b	100	89.597	ENSSMAG00000008088	npm1b	100	89.597	Scophthalmus_maximus
ENSSDUG00000007726	npm1b	100	99.664	ENSSLDG00000021396	npm1b	100	99.664	Seriola_lalandi_dorsalis
ENSSDUG00000007726	npm1b	50	50.943	ENSSPUG00000017271	-	80	50.617	Sphenodon_punctatus
ENSSDUG00000007726	npm1b	100	87.584	ENSSPAG00000011152	npm1b	100	87.584	Stegastes_partitus
ENSSDUG00000007726	npm1b	93	46.735	ENSTGUG00000014970	-	100	46.048	Taeniopygia_guttata
ENSSDUG00000007726	npm1b	100	80.333	ENSTRUG00000008105	npm1b	95	80.333	Takifugu_rubripes
ENSSDUG00000007726	npm1b	99	77.333	ENSTNIG00000013057	npm1b	100	77.667	Tetraodon_nigroviridis
ENSSDUG00000007726	npm1b	98	44.771	ENSXETG00000008403	npm1	97	42.484	Xenopus_tropicalis
ENSSDUG00000007726	npm1b	100	78.930	ENSXMAG00000001986	npm1b	100	79.264	Xiphophorus_maculatus